Wall clock time and date at job start Tue Mar 31 2020 05:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21285 * 119.99897 * 2 1 4 4 N 1.34777 * 120.00380 * 180.02562 * 2 1 3 5 5 C 1.46925 * 120.63471 * 174.53367 * 4 2 1 6 6 C 1.53185 * 108.77753 * 126.36584 * 5 4 2 7 7 C 1.53045 * 109.31376 * 54.63472 * 6 5 4 8 8 C 1.53037 * 109.53666 * 298.63862 * 7 6 5 9 9 H 1.09001 * 109.49638 * 301.40843 * 8 7 6 10 10 C 1.50699 * 109.49473 * 181.31508 * 8 7 6 11 11 O 1.21280 * 120.00486 * 0.15784 * 10 8 7 12 12 N 1.34775 * 119.99901 * 180.15904 * 10 8 7 13 13 C 1.46500 * 120.00202 * 0.02562 * 12 10 8 14 14 C 1.46503 * 120.00232 * 179.97438 * 12 10 8 15 15 H 1.09006 * 109.46706 * 359.97438 * 14 12 10 16 16 C 1.53007 * 109.47057 * 240.00277 * 14 12 10 17 17 C 1.50693 * 109.47199 * 119.99830 * 14 12 10 18 18 H 1.07998 * 120.00177 * 5.23339 * 17 14 12 19 19 C 1.37883 * 119.99847 * 185.22362 * 17 14 12 20 20 N 1.31511 * 120.00251 * 5.11210 * 19 17 14 21 21 Si 1.86803 * 119.99867 * 185.10322 * 19 17 14 22 22 H 1.48496 * 109.47058 * 95.00425 * 21 19 17 23 23 H 1.48505 * 109.47039 * 215.00402 * 21 19 17 24 24 H 1.48497 * 109.47334 * 335.00220 * 21 19 17 25 25 C 1.46923 * 120.62803 * 354.50557 * 4 2 1 26 26 H 1.08997 * 109.47052 * 274.64020 * 1 2 3 27 27 H 1.08999 * 109.47160 * 34.64131 * 1 2 3 28 28 H 1.09000 * 109.46599 * 154.64117 * 1 2 3 29 29 H 1.08997 * 109.58699 * 246.16096 * 5 4 2 30 30 H 1.09000 * 109.58302 * 6.43521 * 5 4 2 31 31 H 1.08999 * 109.49860 * 174.58784 * 6 5 4 32 32 H 1.09001 * 109.49883 * 294.65161 * 6 5 4 33 33 H 1.09001 * 109.45642 * 58.65503 * 7 6 5 34 34 H 1.08995 * 109.45969 * 178.61307 * 7 6 5 35 35 H 1.08997 * 109.47537 * 89.99483 * 13 12 10 36 36 H 1.09000 * 109.47247 * 209.99843 * 13 12 10 37 37 H 1.09004 * 109.46812 * 329.99982 * 13 12 10 38 38 H 1.08999 * 109.46511 * 174.96164 * 16 14 12 39 39 H 1.08998 * 109.46975 * 294.95633 * 16 14 12 40 40 H 1.08991 * 109.47006 * 54.96126 * 16 14 12 41 41 H 0.96993 * 120.00324 * 179.97438 * 20 19 17 42 42 H 1.08997 * 109.59104 * 353.42425 * 25 4 2 43 43 H 1.08999 * 109.58393 * 113.84579 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 3.6451 -1.1862 -0.1210 6 6 4.2251 -1.9963 1.0426 7 6 3.5783 -3.3832 1.0657 8 6 2.0699 -3.2409 1.2807 9 1 1.8839 -2.7159 2.2177 10 6 1.4385 -4.6081 1.3356 11 8 2.1272 -5.5994 1.2176 12 7 0.1083 -4.7293 1.5159 13 6 -0.7238 -3.5320 1.6580 14 6 -0.5056 -6.0585 1.5687 15 1 0.2646 -6.8196 1.4440 16 6 -1.5372 -6.1887 0.4462 17 6 -1.1860 -6.2450 2.9003 18 1 -1.2366 -5.4243 3.6005 19 6 -1.7441 -7.4634 3.2247 20 7 -1.5958 -8.4905 2.4169 21 14 -2.7105 -7.6552 4.8118 22 1 -4.1573 -7.4656 4.5363 23 1 -2.4862 -9.0142 5.3667 24 1 -2.2562 -6.6383 5.7940 25 6 1.4654 -2.4447 0.1200 26 1 -0.3633 0.0831 1.0243 27 1 -0.3633 0.8455 -0.5842 28 1 -0.3632 -0.9287 -0.4401 29 1 3.9281 -1.6498 -1.0660 30 1 4.0279 -0.1662 -0.0854 31 1 5.3024 -2.0995 0.9127 32 1 4.0194 -1.4828 1.9817 33 1 3.7640 -3.8863 0.1167 34 1 4.0072 -3.9704 1.8777 35 1 -1.0702 -3.2116 0.6754 36 1 -1.5825 -3.7592 2.2897 37 1 -0.1377 -2.7343 2.1145 38 1 -1.9291 -7.2057 0.4292 39 1 -2.3535 -5.4876 0.6198 40 1 -1.0638 -5.9658 -0.5099 41 1 -1.9881 -9.3477 2.6452 42 1 0.4103 -2.2555 0.3170 43 1 1.5706 -3.0111 -0.8054 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171551711.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:55 Heat of formation + Delta-G solvation = -72.723404 kcal Electronic energy + Delta-G solvation = -23577.303236 eV Core-core repulsion = 20236.482503 eV Total energy + Delta-G solvation = -3340.820733 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.56897 -39.17825 -37.02094 -35.47388 -33.15631 -33.03758 -31.65766 -29.69728 -29.12093 -26.41028 -25.30270 -25.17137 -24.08985 -21.85681 -20.50899 -19.11400 -18.43242 -17.14604 -16.76184 -16.24948 -16.08689 -15.59175 -15.30395 -14.74496 -14.39702 -14.17774 -13.83290 -13.55811 -13.34920 -13.18887 -12.91669 -12.54537 -12.44898 -12.22117 -12.08926 -11.75574 -11.64171 -11.48165 -11.13702 -11.05375 -10.91061 -10.85569 -10.76293 -10.65907 -10.32384 -10.23974 -9.89297 -9.26624 -9.04196 -8.73523 -8.47482 -7.69717 -6.13336 -4.19707 2.47351 2.82083 3.22602 3.27320 3.31275 3.33842 3.82555 4.34888 4.43168 4.56724 4.82666 4.86454 4.93261 5.06239 5.12600 5.18099 5.20426 5.24855 5.32528 5.43362 5.54530 5.65355 5.69059 5.76642 5.79176 5.83442 5.89639 6.16627 6.24775 6.33986 6.34950 6.64584 6.69454 6.94277 7.24308 7.28470 7.48165 7.64058 7.87987 8.01926 8.10964 8.43640 8.78395 8.96705 9.46411 10.93997 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024884 B = 0.004495 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.968436 B = 6226.967179 C = 6707.709079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.515 3.485 3 O -0.553 6.553 4 N -0.611 5.611 5 C 0.108 3.892 6 C -0.133 4.133 7 C -0.099 4.099 8 C -0.122 4.122 9 H 0.096 0.904 10 C 0.510 3.490 11 O -0.545 6.545 12 N -0.591 5.591 13 C 0.077 3.923 14 C 0.256 3.744 15 H 0.069 0.931 16 C -0.140 4.140 17 C -0.529 4.529 18 H 0.060 0.940 19 C 0.067 3.933 20 N -0.885 5.885 21 Si 0.896 3.104 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.274 1.274 25 C 0.105 3.895 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.045 0.955 36 H 0.083 0.917 37 H 0.054 0.946 38 H 0.078 0.922 39 H 0.033 0.967 40 H 0.014 0.986 41 H 0.264 0.736 42 H 0.103 0.897 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.080 13.630 -4.869 15.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.305 3.695 3 O -0.432 6.432 4 N -0.344 5.344 5 C -0.015 4.015 6 C -0.172 4.172 7 C -0.137 4.137 8 C -0.144 4.144 9 H 0.114 0.886 10 C 0.295 3.705 11 O -0.423 6.423 12 N -0.322 5.322 13 C -0.067 4.067 14 C 0.156 3.844 15 H 0.087 0.913 16 C -0.199 4.199 17 C -0.568 4.568 18 H 0.078 0.922 19 C -0.136 4.136 20 N -0.523 5.523 21 Si 0.724 3.276 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.199 1.199 25 C -0.018 4.018 26 H 0.115 0.885 27 H 0.112 0.888 28 H 0.102 0.898 29 H 0.086 0.914 30 H 0.110 0.890 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.063 0.937 36 H 0.102 0.898 37 H 0.073 0.927 38 H 0.096 0.904 39 H 0.052 0.948 40 H 0.033 0.967 41 H 0.073 0.927 42 H 0.121 0.879 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.681 13.445 -4.957 15.075 hybrid contribution -0.746 -0.286 0.982 1.266 sum 3.935 13.158 -3.975 14.298 Atomic orbital electron populations 1.22012 0.91757 1.04938 1.05200 1.20828 0.90705 0.82880 0.75137 1.90691 1.70805 1.31062 1.50601 1.48199 1.07535 1.06131 1.72582 1.21642 0.79386 1.02009 0.98418 1.21940 1.00301 0.96096 0.98817 1.21321 0.92470 0.96108 1.03788 1.21685 0.97342 0.95226 1.00154 0.88600 1.20151 0.82719 0.89997 0.77618 1.90665 1.61598 1.39242 1.50753 1.48248 1.05902 1.09064 1.69034 1.21784 0.96877 0.87576 1.00446 1.18966 0.92702 0.78385 0.94376 0.91346 1.22016 0.99015 1.02820 0.96007 1.21282 1.36754 0.97534 1.01227 0.92222 1.24898 0.96230 0.95481 0.97012 1.69936 1.44025 1.01166 1.37155 0.86519 0.80167 0.77621 0.83316 1.20617 1.21119 1.19917 1.22079 0.97404 0.83800 0.98505 0.88519 0.88799 0.89765 0.91409 0.89036 0.90403 0.91524 0.90981 0.90604 0.93689 0.89842 0.92705 0.90367 0.94812 0.96704 0.92658 0.87890 0.90637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.51 9.47 36.01 0.34 -1.16 16 2 C 0.52 6.23 7.80 -10.99 -0.09 6.15 16 3 O -0.55 -8.68 16.52 5.55 0.09 -8.59 16 4 N -0.61 -6.95 2.97 -172.78 -0.51 -7.46 16 5 C 0.11 1.15 6.44 -3.71 -0.02 1.13 16 6 C -0.13 -1.38 6.08 -26.61 -0.16 -1.54 16 7 C -0.10 -1.27 4.46 -26.69 -0.12 -1.39 16 8 C -0.12 -1.67 1.87 -91.66 -0.17 -1.84 16 9 H 0.10 1.25 7.41 -51.93 -0.38 0.87 16 10 C 0.51 9.67 7.08 -10.99 -0.08 9.60 16 11 O -0.54 -12.69 15.31 5.56 0.09 -12.61 16 12 N -0.59 -11.50 2.75 -175.26 -0.48 -11.98 16 13 C 0.08 1.12 7.88 59.85 0.47 1.59 16 14 C 0.26 6.18 2.51 -69.08 -0.17 6.00 16 15 H 0.07 1.96 6.88 -51.93 -0.36 1.60 16 16 C -0.14 -3.11 8.89 37.16 0.33 -2.78 16 17 C -0.53 -13.71 8.02 -34.44 -0.28 -13.98 16 18 H 0.06 1.51 7.15 -52.49 -0.38 1.14 16 19 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 20 N -0.89 -24.64 11.97 55.43 0.66 -23.98 16 21 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 23 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 25 C 0.10 1.20 5.00 -3.72 -0.02 1.18 16 26 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.08 0.60 6.20 -51.93 -0.32 0.27 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.09 1.04 7.00 -51.93 -0.36 0.68 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.97 8.13 -51.93 -0.42 0.55 16 34 H 0.08 1.07 8.07 -51.93 -0.42 0.65 16 35 H 0.04 0.54 7.07 -51.93 -0.37 0.17 16 36 H 0.08 1.32 6.93 -51.93 -0.36 0.96 16 37 H 0.05 0.65 5.95 -51.93 -0.31 0.34 16 38 H 0.08 1.93 6.83 -51.93 -0.35 1.58 16 39 H 0.03 0.68 7.84 -51.93 -0.41 0.28 16 40 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 42 H 0.10 1.03 2.20 -51.93 -0.11 0.92 16 43 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 334.11 15.07 5.03 5.03 Total: -1.00 -32.18 334.11 -6.85 -39.03 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -6.65 Total: 0.48 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: -0.06 Total: 4.62 kcal Atomic # 7 Polarization: -43.09 SS G_CDS: -0.33 Total: -43.42 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: 0.18 Total: -21.20 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.18 -6.85 -39.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171551711.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.692 kcal (2) G-P(sol) polarization free energy of solvation -32.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds