Wall clock time and date at job start Tue Mar 31 2020 06:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21289 * 120.00000 * 2 1 4 4 N 1.34777 * 120.00227 * 180.02562 * 2 1 3 5 5 C 1.46959 * 120.65366 * 5.85796 * 4 2 1 6 6 C 1.53186 * 108.88864 * 233.53768 * 5 4 2 7 7 C 1.53048 * 109.31277 * 305.44088 * 6 5 4 8 8 C 1.53044 * 109.53561 * 61.36184 * 7 6 5 9 9 C 1.46927 * 120.62927 * 186.03402 * 4 2 1 10 10 H 1.09001 * 109.58971 * 246.31552 * 9 4 2 11 11 C 1.50695 * 109.58790 * 6.60796 * 9 4 2 12 12 O 1.21285 * 119.99981 * 61.10075 * 11 9 4 13 13 N 1.34773 * 119.99691 * 241.09677 * 11 9 4 14 14 C 1.46509 * 119.99873 * 179.97438 * 13 11 9 15 15 C 1.52997 * 109.47221 * 179.97438 * 14 13 11 16 16 C 1.52999 * 109.47176 * 180.02562 * 15 14 13 17 17 C 1.50700 * 109.47033 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99871 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99937 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00004 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99914 * 359.97438 * 19 17 16 22 22 H 1.48492 * 109.47066 * 90.00121 * 21 19 17 23 23 H 1.48504 * 109.47029 * 210.00288 * 21 19 17 24 24 H 1.48498 * 109.47070 * 329.99911 * 21 19 17 25 25 H 1.08996 * 109.47220 * 239.99849 * 1 2 3 26 26 H 1.09007 * 109.47148 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.46965 * 119.99351 * 1 2 3 28 28 H 1.08994 * 109.46807 * 113.74662 * 5 4 2 29 29 H 1.09004 * 109.70813 * 353.46264 * 5 4 2 30 30 H 1.09000 * 109.50218 * 185.49129 * 6 5 4 31 31 H 1.08999 * 109.49923 * 65.38656 * 6 5 4 32 32 H 1.08997 * 109.45629 * 301.34474 * 7 6 5 33 33 H 1.08996 * 109.46145 * 181.38260 * 7 6 5 34 34 H 1.08999 * 109.49207 * 178.68683 * 8 7 6 35 35 H 1.08997 * 109.49404 * 58.59222 * 8 7 6 36 36 H 0.96999 * 120.00598 * 0.02562 * 13 11 9 37 37 H 1.09001 * 109.46892 * 60.00639 * 14 13 11 38 38 H 1.09002 * 109.46990 * 300.00733 * 14 13 11 39 39 H 1.08999 * 109.47455 * 300.00720 * 15 14 13 40 40 H 1.09009 * 109.46905 * 60.00292 * 15 14 13 41 41 H 1.08998 * 109.46763 * 300.00183 * 16 15 14 42 42 H 1.08997 * 109.46660 * 60.00315 * 16 15 14 43 43 H 0.97001 * 120.00204 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4664 -2.4449 -0.1301 6 6 1.8711 -3.3593 1.0303 7 6 3.3955 -3.4920 1.0623 8 6 4.0244 -2.1154 1.2899 9 6 3.6440 -1.1868 0.1324 10 1 4.0900 -1.5537 -0.7920 11 6 4.1442 0.2060 0.4167 12 8 3.7849 0.7865 1.4191 13 7 4.9909 0.8064 -0.4429 14 6 5.4768 2.1607 -0.1668 15 6 6.4167 2.6041 -1.2897 16 6 6.9246 4.0182 -1.0010 17 6 7.8499 4.4552 -2.1073 18 1 8.0554 3.7906 -2.9335 19 6 8.4348 5.7030 -2.0643 20 7 9.2427 6.0842 -3.0295 21 14 8.0798 6.8521 -0.6350 22 1 9.0741 6.6223 0.4436 23 1 8.1684 8.2603 -1.0982 24 1 6.7145 6.5874 -0.1144 25 1 -0.3633 -0.5138 0.8899 26 1 -0.3634 1.0277 -0.0005 27 1 -0.3633 -0.5138 -0.8901 28 1 1.7327 -2.9156 -1.0764 29 1 0.3910 -2.2695 -0.0992 30 1 1.4232 -4.3432 0.8915 31 1 1.5236 -2.9300 1.9700 32 1 3.7446 -3.8981 0.1130 33 1 3.6848 -4.1618 1.8720 34 1 5.1089 -2.2141 1.3359 35 1 3.6565 -1.6980 2.2272 36 1 5.2781 0.3422 -1.2448 37 1 6.0152 2.1673 0.7809 38 1 4.6307 2.8455 -0.1089 39 1 7.2627 1.9192 -1.3472 40 1 5.8787 2.5974 -2.2377 41 1 6.0788 4.7033 -0.9433 42 1 7.4627 4.0245 -0.0531 43 1 9.6539 6.9622 -2.9995 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179429116.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:51 Heat of formation + Delta-G solvation = -82.736482 kcal Electronic energy + Delta-G solvation = -22731.698101 eV Core-core repulsion = 19390.443168 eV Total energy + Delta-G solvation = -3341.254933 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.99469 -38.45341 -37.54443 -35.27481 -33.31512 -33.17891 -32.09450 -31.13979 -29.67818 -27.32437 -25.62066 -24.16981 -22.56165 -21.40662 -20.65189 -20.14407 -19.00932 -17.50157 -16.75413 -16.53006 -16.27721 -15.52362 -15.28760 -14.90475 -14.63190 -14.41393 -14.08761 -13.98687 -13.77902 -13.53433 -13.19941 -12.89035 -12.63307 -12.52221 -12.27569 -11.86597 -11.83944 -11.74664 -11.47882 -11.25675 -11.08493 -10.94726 -10.81148 -10.05563 -9.85945 -9.67811 -9.63797 -9.29369 -9.14976 -8.92522 -8.53974 -8.49547 -6.00979 -3.98972 2.41928 2.54521 3.30737 3.36282 3.43061 3.45074 3.49964 4.29295 4.35608 4.47618 4.50287 4.58707 4.68287 4.83108 4.90828 4.98533 5.03902 5.11346 5.13682 5.33443 5.33614 5.43942 5.45452 5.60117 5.65072 5.67884 5.75895 5.84213 5.96401 6.17165 6.19266 6.55972 6.62683 6.85585 6.97878 7.13887 7.32578 7.46378 7.80544 7.90054 8.04605 8.56425 8.67949 9.03151 9.61868 11.12371 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030471 B = 0.003281 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.675065 B = 8532.598801 C = 8890.621783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.501 3.499 3 O -0.499 6.499 4 N -0.609 5.609 5 C 0.110 3.890 6 C -0.138 4.138 7 C -0.118 4.118 8 C -0.123 4.123 9 C 0.128 3.872 10 H 0.085 0.915 11 C 0.530 3.470 12 O -0.531 6.531 13 N -0.723 5.723 14 C 0.123 3.877 15 C -0.112 4.112 16 C -0.011 4.011 17 C -0.520 4.520 18 H 0.071 0.929 19 C 0.066 3.934 20 N -0.905 5.905 21 Si 0.879 3.121 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.264 1.264 25 H 0.086 0.914 26 H 0.092 0.908 27 H 0.086 0.914 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.393 0.607 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.019 0.981 42 H 0.014 0.986 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.230 -23.922 6.577 30.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.290 3.710 3 O -0.372 6.372 4 N -0.347 5.347 5 C -0.012 4.012 6 C -0.176 4.176 7 C -0.155 4.155 8 C -0.161 4.161 9 C 0.021 3.979 10 H 0.102 0.898 11 C 0.316 3.684 12 O -0.407 6.407 13 N -0.375 5.375 14 C 0.000 4.000 15 C -0.150 4.150 16 C -0.049 4.049 17 C -0.558 4.558 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.544 5.544 21 Si 0.707 3.293 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.188 1.188 25 H 0.105 0.895 26 H 0.111 0.889 27 H 0.104 0.896 28 H 0.089 0.911 29 H 0.107 0.893 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.227 0.773 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.037 0.963 42 H 0.032 0.968 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.069 -22.718 7.248 29.919 hybrid contribution 0.058 0.332 0.198 0.391 sum -18.012 -22.386 7.447 29.682 Atomic orbital electron populations 1.21898 0.91559 1.05537 1.03726 1.20915 0.90784 0.83177 0.76132 1.90857 1.68686 1.30702 1.46940 1.48026 1.05432 1.06600 1.74650 1.21769 0.97167 0.83534 0.98762 1.21953 0.96721 0.99772 0.99174 1.21512 0.95011 0.96525 1.02496 1.21829 1.01436 0.94571 0.98293 1.21159 0.81619 0.95256 0.99852 0.89757 1.19684 0.78336 0.86441 0.83985 1.90667 1.56578 1.64909 1.28591 1.45950 1.48363 1.17943 1.25228 1.21528 0.97723 0.81560 0.99226 1.21688 0.97247 0.99559 0.96498 1.19500 0.96423 0.91699 0.97290 1.21119 1.26202 1.01181 1.07261 0.91042 1.25024 0.94596 0.97944 0.95943 1.69916 1.31151 1.20477 1.32868 0.86776 0.79606 0.80019 0.82945 1.20259 1.21393 1.18829 0.89538 0.88935 0.89581 0.91082 0.89272 0.90454 0.91201 0.91473 0.91105 0.90253 0.90234 0.77340 0.92315 0.91766 0.92341 0.92282 0.96307 0.96802 0.92759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.33 8.68 36.00 0.31 -1.02 16 2 C 0.50 6.47 7.50 -10.99 -0.08 6.39 16 3 O -0.50 -9.23 12.84 -19.15 -0.25 -9.48 16 4 N -0.61 -6.24 2.98 -166.51 -0.50 -6.73 16 5 C 0.11 0.63 6.34 -3.70 -0.02 0.60 16 6 C -0.14 -0.70 6.08 -26.61 -0.16 -0.86 16 7 C -0.12 -0.70 5.88 -26.68 -0.16 -0.86 16 8 C -0.12 -1.13 5.32 -26.61 -0.14 -1.27 16 9 C 0.13 1.44 3.31 -68.75 -0.23 1.21 16 10 H 0.08 0.76 7.92 -51.93 -0.41 0.35 16 11 C 0.53 8.65 4.39 -10.99 -0.05 8.60 16 12 O -0.53 -10.95 14.59 -19.15 -0.28 -11.23 16 13 N -0.72 -11.61 5.56 -60.29 -0.33 -11.95 16 14 C 0.12 2.34 5.67 -4.04 -0.02 2.32 16 15 C -0.11 -2.29 5.27 -26.73 -0.14 -2.43 16 16 C -0.01 -0.28 4.04 -27.88 -0.11 -0.39 16 17 C -0.52 -15.22 9.66 -34.44 -0.33 -15.55 16 18 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 19 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 20 N -0.91 -28.51 13.96 55.43 0.77 -27.73 16 21 Si 0.88 22.56 27.47 -169.99 -4.67 17.89 16 22 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 24 H -0.26 -6.60 6.54 56.52 0.37 -6.24 16 25 H 0.09 0.52 7.93 -51.93 -0.41 0.11 16 26 H 0.09 0.81 8.12 -51.93 -0.42 0.39 16 27 H 0.09 0.45 7.70 -51.93 -0.40 0.05 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.09 0.34 5.95 -51.93 -0.31 0.03 16 30 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.91 7.94 -51.93 -0.41 0.50 16 36 H 0.39 5.16 8.31 -40.82 -0.34 4.82 16 37 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 41 H 0.02 0.48 7.20 -51.93 -0.37 0.10 16 42 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 43 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 342.12 15.07 5.16 5.16 Total: -1.00 -38.00 342.12 -8.62 -46.62 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -7.29 Total: -1.16 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -1.24 Total: -1.39 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: -0.06 Total: -46.41 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.53 Total: -20.70 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.67 Total: 17.89 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -38.00 -8.62 -46.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179429116.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.118 kcal (2) G-P(sol) polarization free energy of solvation -38.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds