Wall clock time and date at job start Tue Mar 31 2020 06:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21289 * 120.00000 * 2 1 4 4 N 1.34777 * 120.00227 * 180.02562 * 2 1 3 5 5 C 1.46959 * 120.65366 * 5.85796 * 4 2 1 6 6 C 1.53186 * 108.88864 * 233.53768 * 5 4 2 7 7 C 1.53048 * 109.31277 * 305.44088 * 6 5 4 8 8 C 1.53044 * 109.53561 * 61.36184 * 7 6 5 9 9 C 1.46927 * 120.62927 * 186.03402 * 4 2 1 10 10 H 1.09001 * 109.58971 * 246.31552 * 9 4 2 11 11 C 1.50695 * 109.58790 * 6.60796 * 9 4 2 12 12 O 1.21285 * 119.99981 * 61.10075 * 11 9 4 13 13 N 1.34773 * 119.99691 * 241.09677 * 11 9 4 14 14 C 1.46509 * 119.99873 * 179.97438 * 13 11 9 15 15 C 1.52997 * 109.47221 * 179.97438 * 14 13 11 16 16 C 1.52999 * 109.47176 * 180.02562 * 15 14 13 17 17 C 1.50700 * 109.47033 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99871 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99937 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00004 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99914 * 359.97438 * 19 17 16 22 22 H 1.48492 * 109.47066 * 90.00121 * 21 19 17 23 23 H 1.48504 * 109.47029 * 210.00288 * 21 19 17 24 24 H 1.48498 * 109.47070 * 329.99911 * 21 19 17 25 25 H 1.08996 * 109.47220 * 239.99849 * 1 2 3 26 26 H 1.09007 * 109.47148 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.46965 * 119.99351 * 1 2 3 28 28 H 1.08994 * 109.46807 * 113.74662 * 5 4 2 29 29 H 1.09004 * 109.70813 * 353.46264 * 5 4 2 30 30 H 1.09000 * 109.50218 * 185.49129 * 6 5 4 31 31 H 1.08999 * 109.49923 * 65.38656 * 6 5 4 32 32 H 1.08997 * 109.45629 * 301.34474 * 7 6 5 33 33 H 1.08996 * 109.46145 * 181.38260 * 7 6 5 34 34 H 1.08999 * 109.49207 * 178.68683 * 8 7 6 35 35 H 1.08997 * 109.49404 * 58.59222 * 8 7 6 36 36 H 0.96999 * 120.00598 * 0.02562 * 13 11 9 37 37 H 1.09001 * 109.46892 * 60.00639 * 14 13 11 38 38 H 1.09002 * 109.46990 * 300.00733 * 14 13 11 39 39 H 1.08999 * 109.47455 * 300.00720 * 15 14 13 40 40 H 1.09009 * 109.46905 * 60.00292 * 15 14 13 41 41 H 1.08998 * 109.46763 * 300.00183 * 16 15 14 42 42 H 1.08997 * 109.46660 * 60.00315 * 16 15 14 43 43 H 0.97001 * 120.00204 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4664 -2.4449 -0.1301 6 6 1.8711 -3.3593 1.0303 7 6 3.3955 -3.4920 1.0623 8 6 4.0244 -2.1154 1.2899 9 6 3.6440 -1.1868 0.1324 10 1 4.0900 -1.5537 -0.7920 11 6 4.1442 0.2060 0.4167 12 8 3.7849 0.7865 1.4191 13 7 4.9909 0.8064 -0.4429 14 6 5.4768 2.1607 -0.1668 15 6 6.4167 2.6041 -1.2897 16 6 6.9246 4.0182 -1.0010 17 6 7.8499 4.4552 -2.1073 18 1 8.0554 3.7906 -2.9335 19 6 8.4348 5.7030 -2.0643 20 7 9.2427 6.0842 -3.0295 21 14 8.0798 6.8521 -0.6350 22 1 9.0741 6.6223 0.4436 23 1 8.1684 8.2603 -1.0982 24 1 6.7145 6.5874 -0.1144 25 1 -0.3633 -0.5138 0.8899 26 1 -0.3634 1.0277 -0.0005 27 1 -0.3633 -0.5138 -0.8901 28 1 1.7327 -2.9156 -1.0764 29 1 0.3910 -2.2695 -0.0992 30 1 1.4232 -4.3432 0.8915 31 1 1.5236 -2.9300 1.9700 32 1 3.7446 -3.8981 0.1130 33 1 3.6848 -4.1618 1.8720 34 1 5.1089 -2.2141 1.3359 35 1 3.6565 -1.6980 2.2272 36 1 5.2781 0.3422 -1.2448 37 1 6.0152 2.1673 0.7809 38 1 4.6307 2.8455 -0.1089 39 1 7.2627 1.9192 -1.3472 40 1 5.8787 2.5974 -2.2377 41 1 6.0788 4.7033 -0.9433 42 1 7.4627 4.0245 -0.0531 43 1 9.6539 6.9622 -2.9995 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179429116.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:50 Heat of formation + Delta-G solvation = -109.796103 kcal Electronic energy + Delta-G solvation = -22732.871494 eV Core-core repulsion = 19390.443168 eV Total energy + Delta-G solvation = -3342.428326 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.95411 -39.66773 -38.35459 -36.92255 -35.12722 -34.06276 -33.44437 -32.49437 -30.33946 -29.09396 -26.50662 -25.15226 -24.05900 -22.28775 -22.13364 -21.42313 -19.93458 -18.99529 -18.45765 -17.54681 -17.28164 -16.64625 -16.48756 -16.29036 -16.09000 -15.27736 -15.15304 -14.96412 -14.85635 -14.79667 -14.36237 -14.15750 -13.86111 -13.74494 -13.48610 -13.18832 -12.93580 -12.76113 -12.70108 -12.51386 -12.08425 -11.94126 -11.80925 -11.73882 -11.64615 -11.60224 -11.37149 -10.79194 -10.70980 -10.58466 -10.01894 -9.67232 -8.32576 -6.36270 1.33191 1.35126 1.47893 1.50052 1.63786 2.22395 2.29264 2.33662 3.02670 3.53412 3.82624 3.83324 3.89537 4.06815 4.08109 4.12353 4.16146 4.24273 4.39983 4.46089 4.51113 4.59620 4.68718 4.80987 4.84748 4.88385 4.90891 4.95781 4.99610 5.09226 5.15380 5.21952 5.37853 5.44916 5.48512 5.50887 5.54375 5.61944 6.24304 6.35977 6.64143 6.70976 7.14792 7.28452 7.46104 8.83864 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030471 B = 0.003281 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.675065 B = 8532.598801 C = 8890.621783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.485 3.515 3 O -0.568 6.568 4 N -0.605 5.605 5 C 0.102 3.898 6 C -0.135 4.135 7 C -0.113 4.113 8 C -0.119 4.119 9 C 0.129 3.871 10 H 0.113 0.887 11 C 0.524 3.476 12 O -0.580 6.580 13 N -0.720 5.720 14 C 0.139 3.861 15 C -0.096 4.096 16 C -0.011 4.011 17 C -0.531 4.531 18 H 0.040 0.960 19 C 0.007 3.993 20 N -0.948 5.948 21 Si 0.946 3.054 22 H -0.264 1.264 23 H -0.280 1.280 24 H -0.255 1.255 25 H 0.109 0.891 26 H 0.077 0.923 27 H 0.120 0.880 28 H 0.094 0.906 29 H 0.113 0.887 30 H 0.108 0.892 31 H 0.055 0.945 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.049 0.951 36 H 0.409 0.591 37 H 0.052 0.948 38 H 0.037 0.963 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.014 0.986 42 H 0.020 0.980 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.902 -26.609 7.020 33.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.276 3.724 3 O -0.447 6.447 4 N -0.342 5.342 5 C -0.018 4.018 6 C -0.173 4.173 7 C -0.151 4.151 8 C -0.158 4.158 9 C 0.022 3.978 10 H 0.131 0.869 11 C 0.312 3.688 12 O -0.460 6.460 13 N -0.372 5.372 14 C 0.014 3.986 15 C -0.134 4.134 16 C -0.049 4.049 17 C -0.569 4.569 18 H 0.058 0.942 19 C -0.190 4.190 20 N -0.589 5.589 21 Si 0.769 3.231 22 H -0.189 1.189 23 H -0.206 1.206 24 H -0.179 1.179 25 H 0.128 0.872 26 H 0.096 0.904 27 H 0.138 0.862 28 H 0.112 0.888 29 H 0.131 0.869 30 H 0.126 0.874 31 H 0.074 0.926 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.068 0.932 36 H 0.244 0.756 37 H 0.071 0.929 38 H 0.056 0.944 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.032 0.968 42 H 0.038 0.962 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -19.758 -25.501 7.668 33.158 hybrid contribution 0.584 1.082 0.001 1.229 sum -19.174 -24.419 7.669 31.980 Atomic orbital electron populations 1.21904 0.87882 1.05586 1.06392 1.21863 0.92780 0.82861 0.74927 1.90821 1.70193 1.33196 1.50477 1.48245 1.05023 1.07766 1.73141 1.22189 0.98159 0.81381 1.00084 1.21967 0.96074 1.01030 0.98246 1.21531 0.95516 0.94148 1.03857 1.21832 1.01940 0.96024 0.95985 1.21220 0.82749 0.91919 1.01897 0.86927 1.20596 0.77163 0.88138 0.82872 1.90627 1.57941 1.66677 1.30713 1.45830 1.48522 1.16797 1.26069 1.21087 0.96212 0.82997 0.98268 1.21458 0.97766 0.97325 0.96873 1.19451 0.95384 0.94118 0.95927 1.21427 1.26901 1.00975 1.07554 0.94206 1.25941 0.94359 0.99824 0.98840 1.70046 1.32451 1.21334 1.35033 0.85718 0.79999 0.77812 0.79525 1.18906 1.20571 1.17941 0.87226 0.90357 0.86161 0.88825 0.86906 0.87409 0.92586 0.89632 0.90104 0.89915 0.93180 0.75564 0.92937 0.94430 0.91211 0.92272 0.96794 0.96208 0.92374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 8.68 71.23 0.62 -1.59 16 2 C 0.49 12.24 7.50 87.66 0.66 12.89 16 3 O -0.57 -21.81 12.84 20.56 0.26 -21.55 16 4 N -0.61 -11.22 2.98 -799.11 -2.38 -13.61 16 5 C 0.10 0.75 6.34 86.35 0.55 1.29 16 6 C -0.14 -0.85 6.08 30.67 0.19 -0.67 16 7 C -0.11 -0.97 5.88 30.62 0.18 -0.79 16 8 C -0.12 -2.04 5.32 30.67 0.16 -1.87 16 9 C 0.13 2.72 3.31 44.23 0.15 2.87 16 10 H 0.11 1.73 7.92 -2.39 -0.02 1.71 16 11 C 0.52 17.35 4.39 87.66 0.38 17.74 16 12 O -0.58 -24.97 14.59 20.57 0.30 -24.67 16 13 N -0.72 -23.24 5.56 -463.05 -2.57 -25.82 16 14 C 0.14 5.41 5.67 86.38 0.49 5.90 16 15 C -0.10 -3.96 5.27 30.59 0.16 -3.79 16 16 C -0.01 -0.54 4.04 29.85 0.12 -0.42 16 17 C -0.53 -31.65 9.66 25.60 0.25 -31.40 16 18 H 0.04 2.55 7.99 -2.91 -0.02 2.53 16 19 C 0.01 0.45 5.47 84.65 0.46 0.91 16 20 N -0.95 -60.73 13.96 21.45 0.30 -60.43 16 21 Si 0.95 46.60 27.47 68.60 1.88 48.49 16 22 H -0.26 -12.43 7.11 99.48 0.71 -11.72 16 23 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 24 H -0.26 -12.15 6.54 99.48 0.65 -11.50 16 25 H 0.11 1.01 7.93 -2.39 -0.02 0.99 16 26 H 0.08 1.34 8.12 -2.38 -0.02 1.32 16 27 H 0.12 0.82 7.70 -2.38 -0.02 0.80 16 28 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.11 0.32 5.95 -2.38 -0.01 0.30 16 30 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 31 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.05 1.15 7.94 -2.39 -0.02 1.13 16 36 H 0.41 10.41 8.31 -92.71 -0.77 9.64 16 37 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 40 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16 41 H 0.01 0.70 7.20 -2.39 -0.02 0.68 16 42 H 0.02 0.96 7.57 -2.39 -0.02 0.94 16 43 H 0.27 15.94 8.31 -92.71 -0.77 15.16 16 Total: -1.00 -87.46 342.12 2.32 -85.14 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 0.16 Total: 11.38 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: 4.37 Total: 1.07 kcal Atomic # 7 Polarization: -95.19 SS G_CDS: -4.65 Total: -99.85 kcal Atomic # 8 Polarization: -46.79 SS G_CDS: 0.56 Total: -46.22 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 1.88 Total: 48.49 kcal Total: -87.46 2.32 -85.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179429116.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.660 kcal (2) G-P(sol) polarization free energy of solvation -87.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds