Wall clock time and date at job start Tue Mar 31 2020 06:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21274 * 120.00235 * 2 1 4 4 N 1.34781 * 119.99509 * 180.02562 * 2 1 3 5 5 C 1.46921 * 120.63390 * 5.51012 * 4 2 1 6 6 C 1.53191 * 108.89062 * 126.46861 * 5 4 2 7 7 C 1.53040 * 109.31082 * 54.56718 * 6 5 4 8 8 C 1.53043 * 109.54083 * 298.63163 * 7 6 5 9 9 C 1.46964 * 120.64816 * 185.33908 * 4 2 1 10 10 H 1.08997 * 109.46424 * 113.74461 * 9 4 2 11 11 C 1.50696 * 109.59728 * 353.38978 * 9 4 2 12 12 O 1.21279 * 119.99960 * 303.04833 * 11 9 4 13 13 N 1.34780 * 120.00232 * 123.04520 * 11 9 4 14 14 C 1.46500 * 119.99962 * 179.97438 * 13 11 9 15 15 C 1.53002 * 109.46909 * 180.02562 * 14 13 11 16 16 C 1.52993 * 109.46897 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.47369 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99456 * 359.97438 * 17 16 15 19 19 C 1.37870 * 120.00416 * 179.97438 * 17 16 15 20 20 N 1.31510 * 120.00137 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 120.00192 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46841 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46924 * 120.00018 * 21 19 17 24 24 H 1.48495 * 109.47147 * 240.00344 * 21 19 17 25 25 H 1.09000 * 109.47022 * 185.56188 * 1 2 3 26 26 H 1.08996 * 109.47099 * 305.56952 * 1 2 3 27 27 H 1.09003 * 109.46580 * 65.56466 * 1 2 3 28 28 H 1.09003 * 109.58695 * 6.61515 * 5 4 2 29 29 H 1.08994 * 109.59269 * 246.32942 * 5 4 2 30 30 H 1.09000 * 109.50047 * 174.51912 * 6 5 4 31 31 H 1.09003 * 109.50300 * 294.61382 * 6 5 4 32 32 H 1.08997 * 109.46159 * 58.65530 * 7 6 5 33 33 H 1.09007 * 109.46240 * 178.61192 * 7 6 5 34 34 H 1.09000 * 109.49993 * 181.31706 * 8 7 6 35 35 H 1.09003 * 109.49865 * 301.38606 * 8 7 6 36 36 H 0.96994 * 119.99400 * 0.02562 * 13 11 9 37 37 H 1.08997 * 109.47125 * 300.00341 * 14 13 11 38 38 H 1.08997 * 109.47129 * 59.99707 * 14 13 11 39 39 H 1.08996 * 109.46823 * 299.99839 * 15 14 13 40 40 H 1.09000 * 109.46797 * 60.00074 * 15 14 13 41 41 H 1.09007 * 109.47268 * 300.00080 * 16 15 14 42 42 H 1.08997 * 109.47654 * 60.00037 * 16 15 14 43 43 H 0.97000 * 120.00445 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 1.4653 -2.4447 -0.1225 6 6 2.0697 -3.2430 -1.2819 7 6 3.5780 -3.3858 -1.0659 8 6 4.2257 -1.9993 -1.0449 9 6 3.6456 -1.1868 0.1171 10 1 3.9279 -1.6492 1.0630 11 6 4.1760 0.2227 0.0624 12 8 3.9246 0.9285 -0.8913 13 7 4.9295 0.6989 1.0733 14 6 5.4455 2.0690 1.0197 15 6 6.2636 2.3555 2.2805 16 6 6.8030 3.7860 2.2243 17 6 7.6083 4.0685 3.4664 18 1 7.7234 3.3041 4.2207 19 6 8.1980 5.3026 3.6399 20 7 8.0574 6.2335 2.7217 21 14 9.1956 5.6529 5.1800 22 1 9.2006 4.4499 6.0507 23 1 10.5900 5.9938 4.7996 24 1 8.5897 6.7930 5.9136 25 1 -0.3633 -1.0228 0.0996 26 1 -0.3633 0.5978 0.8359 27 1 -0.3632 0.4251 -0.9357 28 1 0.4103 -2.2551 -0.3203 29 1 1.5675 -3.0107 0.8033 30 1 1.6125 -4.2317 -1.3202 31 1 1.8844 -2.7195 -2.2198 32 1 3.7630 -3.8874 -0.1161 33 1 4.0069 -3.9746 -1.8769 34 1 5.3029 -2.1028 -0.9145 35 1 4.0205 -1.4876 -1.9852 36 1 5.1307 0.1343 1.8358 37 1 6.0803 2.1841 0.1412 38 1 4.6122 2.7690 0.9600 39 1 5.6291 2.2402 3.1593 40 1 7.0970 1.6554 2.3397 41 1 7.4376 3.9009 1.3455 42 1 5.9700 4.4865 2.1649 43 1 8.4726 7.1016 2.8436 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179429126.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:53 Heat of formation + Delta-G solvation = -71.939846 kcal Electronic energy + Delta-G solvation = -22669.463482 eV Core-core repulsion = 19328.676727 eV Total energy + Delta-G solvation = -3340.786755 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.93762 -38.35055 -37.46595 -35.14814 -33.28155 -33.17611 -32.05195 -30.88741 -29.57214 -26.93907 -25.52555 -24.13680 -22.73523 -21.35721 -20.58074 -20.22799 -18.87324 -17.56361 -16.52007 -16.35852 -16.12496 -15.44961 -15.12312 -14.82559 -14.62974 -14.38876 -14.32723 -13.98772 -13.75499 -13.46380 -13.19677 -12.81787 -12.35776 -12.20562 -12.10452 -11.82067 -11.72310 -11.53662 -11.40584 -11.19898 -10.99754 -10.86955 -10.62247 -10.50987 -9.80175 -9.65515 -9.34820 -9.13857 -9.00416 -8.84561 -8.35593 -8.31883 -5.96268 -3.99122 2.49379 2.61293 3.33283 3.40237 3.41079 3.43973 3.52646 4.32274 4.38432 4.48706 4.52694 4.62124 4.73913 4.85783 4.89212 5.03854 5.06824 5.20936 5.26215 5.38898 5.39268 5.48796 5.50480 5.63906 5.70685 5.72322 5.90005 5.95316 6.00779 6.25238 6.32799 6.71376 6.76662 7.00240 7.14784 7.22178 7.71319 7.85251 7.95511 8.03609 8.16538 8.44722 8.79474 9.07998 9.64631 11.15142 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031370 B = 0.003073 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.354959 B = 9110.211858 C = 9491.003922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.495 3.505 3 O -0.492 6.492 4 N -0.609 5.609 5 C 0.106 3.894 6 C -0.138 4.138 7 C -0.117 4.117 8 C -0.123 4.123 9 C 0.129 3.871 10 H 0.084 0.916 11 C 0.520 3.480 12 O -0.510 6.510 13 N -0.728 5.728 14 C 0.124 3.876 15 C -0.119 4.119 16 C 0.023 3.977 17 C -0.520 4.520 18 H 0.055 0.945 19 C 0.056 3.944 20 N -0.894 5.894 21 Si 0.892 3.108 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.078 0.922 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.392 0.608 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.018 0.982 42 H 0.019 0.981 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.189 -23.953 -6.264 29.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.283 3.717 3 O -0.365 6.365 4 N -0.347 5.347 5 C -0.016 4.016 6 C -0.176 4.176 7 C -0.155 4.155 8 C -0.162 4.162 9 C 0.022 3.978 10 H 0.102 0.898 11 C 0.304 3.696 12 O -0.384 6.384 13 N -0.380 5.380 14 C 0.002 3.998 15 C -0.157 4.157 16 C -0.014 4.014 17 C -0.558 4.558 18 H 0.074 0.926 19 C -0.146 4.146 20 N -0.533 5.533 21 Si 0.720 3.280 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 H 0.097 0.903 26 H 0.112 0.888 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.225 0.775 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.037 0.963 42 H 0.037 0.963 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.010 -22.615 -7.013 28.035 hybrid contribution 0.626 -0.096 1.235 1.388 sum -14.384 -22.711 -5.778 27.497 Atomic orbital electron populations 1.22012 0.92017 1.04030 1.05285 1.20929 0.90611 0.83578 0.76580 1.91031 1.68352 1.30947 1.46179 1.47987 1.05149 1.06587 1.74990 1.21852 0.96854 0.84062 0.98837 1.21950 0.96288 1.00374 0.98970 1.21509 0.95125 0.96428 1.02446 1.21829 1.00309 0.95430 0.98587 1.21164 0.81279 0.95491 0.99887 0.89797 1.19732 0.78492 0.87540 0.83803 1.90695 1.55681 1.58055 1.33942 1.46049 1.53693 1.16123 1.22090 1.21522 0.97679 0.81018 0.99620 1.21870 0.97817 1.01462 0.94590 1.19030 0.96056 0.89019 0.97320 1.21257 1.31562 0.98265 1.04756 0.92635 1.25038 0.96628 0.96349 0.96537 1.69981 1.44655 1.04673 1.33998 0.86532 0.79910 0.78216 0.83301 1.19774 1.21030 1.21024 0.90306 0.88820 0.88937 0.88913 0.91223 0.90498 0.91211 0.91511 0.91149 0.90288 0.90295 0.77527 0.92261 0.91817 0.92938 0.92929 0.96315 0.96284 0.93026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.47 10.01 36.01 0.36 -1.11 16 2 C 0.49 6.66 7.63 -10.98 -0.08 6.58 16 3 O -0.49 -9.53 12.20 -20.04 -0.24 -9.77 16 4 N -0.61 -6.53 2.98 -166.51 -0.50 -7.03 16 5 C 0.11 0.65 6.24 -3.71 -0.02 0.63 16 6 C -0.14 -0.77 6.08 -26.61 -0.16 -0.93 16 7 C -0.12 -0.75 5.88 -26.69 -0.16 -0.90 16 8 C -0.12 -1.19 5.34 -26.61 -0.14 -1.33 16 9 C 0.13 1.50 3.30 -68.73 -0.23 1.27 16 10 H 0.08 0.78 7.93 -51.93 -0.41 0.37 16 11 C 0.52 8.77 4.82 -10.99 -0.05 8.72 16 12 O -0.51 -10.94 13.89 -20.04 -0.28 -11.22 16 13 N -0.73 -12.01 5.56 -60.30 -0.33 -12.34 16 14 C 0.12 2.49 5.67 -4.04 -0.02 2.47 16 15 C -0.12 -2.53 5.27 -26.73 -0.14 -2.67 16 16 C 0.02 0.63 4.97 -27.89 -0.14 0.49 16 17 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 18 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -27.63 13.29 55.43 0.74 -26.89 16 21 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 22 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 25 H 0.08 0.40 5.31 -51.93 -0.28 0.13 16 26 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.09 0.40 5.25 -51.93 -0.27 0.12 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.39 8.14 -51.92 -0.42 -0.03 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.95 8.02 -51.93 -0.42 0.53 16 36 H 0.39 5.22 8.32 -40.82 -0.34 4.88 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.06 1.43 8.14 -51.93 -0.42 1.00 16 39 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.02 0.53 8.14 -51.92 -0.42 0.10 16 42 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 343.43 15.07 5.18 5.18 Total: -1.00 -37.68 343.43 -8.84 -46.52 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -7.18 Total: -0.82 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -1.20 Total: -0.61 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: -0.09 Total: -46.26 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: -0.52 Total: -20.99 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -37.68 -8.84 -46.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179429126.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.417 kcal (2) G-P(sol) polarization free energy of solvation -37.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds