Wall clock time and date at job start Tue Mar 31 2020 05:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46998 * 2 1 4 4 C 1.53000 * 109.47443 * 119.99499 * 2 1 3 5 5 H 1.08997 * 109.47182 * 295.34356 * 4 2 1 6 6 C 1.50694 * 109.47211 * 175.33977 * 4 2 1 7 7 O 1.21286 * 119.99867 * 265.94341 * 6 4 2 8 8 N 1.34771 * 120.00367 * 85.94047 * 6 4 2 9 9 C 1.46497 * 120.00440 * 184.10445 * 8 6 4 10 10 H 1.09000 * 109.47188 * 35.00306 * 9 8 6 11 11 C 1.53002 * 109.47501 * 275.00407 * 9 8 6 12 12 C 1.50701 * 109.47063 * 155.00068 * 9 8 6 13 13 H 1.07995 * 120.00161 * 33.86596 * 12 9 8 14 14 C 1.37880 * 119.99916 * 213.85615 * 12 9 8 15 15 N 1.31517 * 119.99878 * 180.44279 * 14 12 9 16 16 Si 1.86798 * 120.00135 * 0.44917 * 14 12 9 17 17 H 1.48499 * 109.47307 * 88.90660 * 16 14 12 18 18 H 1.48500 * 109.47251 * 208.90917 * 16 14 12 19 19 H 1.48506 * 109.46993 * 328.90955 * 16 14 12 20 20 N 1.46505 * 109.46696 * 55.34167 * 4 2 1 21 21 C 1.46760 * 124.35040 * 54.98767 * 20 4 2 22 22 C 1.54481 * 105.47280 * 196.99459 * 21 20 4 23 23 C 1.54630 * 101.76649 * 334.58471 * 22 21 20 24 24 C 1.34416 * 124.34741 * 234.96285 * 20 4 2 25 25 O 1.21287 * 124.94372 * 359.34882 * 24 20 4 26 26 H 1.09006 * 109.47050 * 294.46731 * 1 2 3 27 27 H 1.08995 * 109.47225 * 54.46312 * 1 2 3 28 28 H 1.09000 * 109.47113 * 174.47050 * 1 2 3 29 29 H 1.08996 * 109.47233 * 240.00208 * 2 1 3 30 30 H 1.09007 * 109.46765 * 297.73507 * 3 2 1 31 31 H 1.09000 * 109.46995 * 57.73331 * 3 2 1 32 32 H 1.08997 * 109.47221 * 177.74106 * 3 2 1 33 33 H 0.97000 * 119.99544 * 4.11155 * 8 6 4 34 34 H 1.08992 * 109.47153 * 184.92594 * 11 9 8 35 35 H 1.09004 * 109.46582 * 304.92779 * 11 9 8 36 36 H 1.09002 * 109.47151 * 64.92322 * 11 9 8 37 37 H 0.97005 * 119.99838 * 180.02562 * 15 14 12 38 38 H 1.08998 * 110.25138 * 315.99459 * 21 20 4 39 39 H 1.08995 * 110.24456 * 77.99594 * 21 20 4 40 40 H 1.09004 * 110.96777 * 92.70579 * 22 21 20 41 41 H 1.09004 * 110.97098 * 216.46591 * 22 21 20 42 42 H 1.08996 * 110.48675 * 266.12249 * 23 22 21 43 43 H 1.08999 * 110.48774 * 143.47733 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7211 1.2493 5 1 1.7465 -0.1613 2.1372 6 6 3.5426 -0.8218 1.1929 7 8 4.0670 -1.8164 0.7380 8 7 4.3036 0.1931 1.6478 9 6 5.7610 0.1344 1.5110 10 1 6.0185 -0.3673 0.5782 11 6 6.3529 -0.6430 2.6884 12 6 6.3213 1.5334 1.5003 13 1 5.8528 2.3073 2.0900 14 6 7.4323 1.8252 0.7375 15 7 7.9264 3.0440 0.7349 16 14 8.2354 0.4895 -0.2922 17 1 7.6021 0.4515 -1.6348 18 1 9.6846 0.7798 -0.4365 19 1 8.0579 -0.8247 0.3761 20 7 1.4623 -2.0662 1.3067 21 6 1.5625 -3.0573 0.2290 22 6 0.4747 -4.1105 0.5351 23 6 0.3170 -3.9650 2.0665 24 6 0.7726 -2.5512 2.3536 25 8 0.5521 -1.9455 3.3810 26 1 -0.3633 0.4257 0.9354 27 1 -0.3633 0.5973 -0.8362 28 1 -0.3633 -1.0229 -0.0990 29 1 1.8933 -0.5138 -0.8900 30 1 1.7101 1.9445 -0.9097 31 1 1.6438 1.9680 0.8690 32 1 3.1292 1.4429 0.0405 33 1 3.8863 0.9626 2.0658 34 1 7.4410 -0.6122 2.6339 35 1 6.0230 -0.1918 3.6242 36 1 6.0162 -1.6789 2.6459 37 1 8.7078 3.2493 0.1980 38 1 1.3711 -2.5867 -0.7353 39 1 2.5488 -3.5213 0.2338 40 1 -0.4566 -3.8698 0.0224 41 1 0.8159 -5.1117 0.2715 42 1 0.9519 -4.6831 2.5853 43 1 -0.7254 -4.0963 2.3568 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194624331.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:52 Heat of formation + Delta-G solvation = -83.339643 kcal Electronic energy + Delta-G solvation = -23743.045383 eV Core-core repulsion = 20401.764295 eV Total energy + Delta-G solvation = -3341.281088 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.78265 -38.93033 -36.53531 -35.58637 -34.90906 -32.37039 -31.77246 -29.99647 -27.56763 -27.12065 -26.64865 -25.29930 -22.20158 -21.67057 -20.35203 -19.72338 -19.18945 -17.54901 -16.90086 -16.64725 -16.16524 -15.34357 -14.99467 -14.70677 -14.42104 -14.05201 -13.71141 -13.43478 -13.37608 -12.95392 -12.81075 -12.59836 -12.56971 -12.31351 -12.25917 -12.05557 -11.53653 -11.52255 -11.31518 -11.18509 -11.08275 -10.99734 -10.83329 -10.75237 -10.53434 -9.91887 -9.82624 -9.51727 -9.20565 -8.77780 -8.38267 -8.12726 -6.25879 -4.29661 2.57949 2.84473 3.18410 3.25796 3.30929 3.38000 3.97085 4.29194 4.31607 4.41195 4.72385 4.78897 4.87633 4.96713 5.04632 5.17538 5.35710 5.41418 5.43290 5.51955 5.62102 5.65220 5.67691 5.69575 5.84406 5.95093 6.03114 6.05963 6.26428 6.30161 6.43102 6.50044 6.53454 6.66702 6.89853 7.13575 7.18765 7.34511 7.51120 8.07391 8.19293 8.52071 8.74206 8.88992 9.35742 10.85805 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022579 B = 0.005134 C = 0.004843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.773855 B = 5452.283627 C = 5780.304266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.096 4.096 3 C -0.160 4.160 4 C 0.138 3.862 5 H 0.111 0.889 6 C 0.496 3.504 7 O -0.553 6.553 8 N -0.698 5.698 9 C 0.234 3.766 10 H 0.048 0.952 11 C -0.149 4.149 12 C -0.530 4.530 13 H 0.079 0.921 14 C 0.082 3.918 15 N -0.888 5.888 16 Si 0.873 3.127 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.259 1.259 20 N -0.592 5.592 21 C 0.103 3.897 22 C -0.132 4.132 23 C -0.152 4.152 24 C 0.516 3.484 25 O -0.538 6.538 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.394 0.606 34 H 0.054 0.946 35 H 0.045 0.955 36 H 0.028 0.972 37 H 0.268 0.732 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.103 0.897 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.737 -10.507 -2.900 19.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.116 4.116 3 C -0.218 4.218 4 C 0.031 3.969 5 H 0.129 0.871 6 C 0.279 3.721 7 O -0.432 6.432 8 N -0.346 5.346 9 C 0.131 3.869 10 H 0.066 0.934 11 C -0.208 4.208 12 C -0.568 4.568 13 H 0.097 0.903 14 C -0.123 4.123 15 N -0.525 5.525 16 Si 0.699 3.301 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.184 1.184 20 N -0.325 5.325 21 C -0.020 4.020 22 C -0.170 4.170 23 C -0.192 4.192 24 C 0.304 3.696 25 O -0.416 6.416 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.228 0.772 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.048 0.952 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.106 0.894 40 H 0.098 0.902 41 H 0.107 0.893 42 H 0.121 0.879 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -15.251 -10.684 -2.766 18.826 hybrid contribution 0.470 -0.172 -0.400 0.641 sum -14.781 -10.856 -3.166 18.610 Atomic orbital electron populations 1.21775 0.94244 1.01679 1.02003 1.21306 0.96474 0.97024 0.96749 1.22001 1.03402 0.94017 1.02346 1.21084 0.91343 0.83159 1.01290 0.87104 1.20749 0.88656 0.83935 0.78718 1.90601 1.74645 1.30623 1.47287 1.46716 1.09167 1.20113 1.58646 1.19109 0.75778 0.96977 0.95018 0.93366 1.22242 1.00717 0.97965 0.99831 1.21002 1.13253 0.93439 1.29107 0.90265 1.24915 0.96460 0.95261 0.95634 1.69882 1.23376 1.19065 1.40142 0.86918 0.78730 0.83108 0.81306 1.19982 1.21123 1.18365 1.47884 1.52983 1.13427 1.18211 1.22147 1.00205 0.89058 0.90571 1.22629 0.99456 1.00070 0.94845 1.22294 1.03947 0.95273 0.97693 1.20938 0.77553 0.88618 0.82525 1.90717 1.58740 1.65038 1.27082 0.92510 0.92293 0.92766 0.90325 0.91927 0.92169 0.90342 0.77161 0.92704 0.93631 0.95250 0.92249 0.90561 0.89387 0.90249 0.89252 0.87863 0.88267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 8.89 37.16 0.33 -1.15 16 2 C -0.10 -1.22 2.14 -90.62 -0.19 -1.42 16 3 C -0.16 -2.08 8.78 37.16 0.33 -1.76 16 4 C 0.14 2.09 2.26 -69.08 -0.16 1.93 16 5 H 0.11 1.71 7.55 -51.93 -0.39 1.32 16 6 C 0.50 9.38 6.42 -10.99 -0.07 9.31 16 7 O -0.55 -11.92 14.53 5.55 0.08 -11.84 16 8 N -0.70 -13.92 3.85 -54.94 -0.21 -14.13 16 9 C 0.23 5.49 2.09 -69.08 -0.14 5.34 16 10 H 0.05 1.23 4.99 -51.93 -0.26 0.97 16 11 C -0.15 -3.32 9.31 37.16 0.35 -2.97 16 12 C -0.53 -13.98 9.05 -34.44 -0.31 -14.29 16 13 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 14 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 15 N -0.89 -25.79 13.96 55.43 0.77 -25.02 16 16 Si 0.87 21.17 26.63 -169.99 -4.53 16.64 16 17 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.26 -6.21 6.56 56.52 0.37 -5.84 16 20 N -0.59 -8.27 1.84 -166.17 -0.31 -8.57 16 21 C 0.10 1.17 5.97 -3.12 -0.02 1.15 16 22 C -0.13 -1.04 7.18 -25.10 -0.18 -1.22 16 23 C -0.15 -1.47 6.86 -26.74 -0.18 -1.65 16 24 C 0.52 7.45 8.02 -10.86 -0.09 7.36 16 25 O -0.54 -9.78 17.36 5.55 0.10 -9.69 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.55 7.42 -51.93 -0.39 0.17 16 29 H 0.08 1.04 7.36 -51.93 -0.38 0.66 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.08 1.25 6.21 -51.93 -0.32 0.92 16 33 H 0.39 7.12 8.18 -40.82 -0.33 6.79 16 34 H 0.05 1.23 7.64 -51.93 -0.40 0.83 16 35 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.08 0.79 7.10 -51.93 -0.37 0.42 16 39 H 0.09 1.18 7.04 -51.93 -0.37 0.82 16 40 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 342.64 15.07 5.16 5.16 Total: -1.00 -32.31 342.64 -6.39 -38.70 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -7.02 Total: 5.94 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -0.44 Total: 2.79 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: 0.26 Total: -47.72 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: 0.18 Total: -21.52 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.53 Total: 16.64 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.31 -6.39 -38.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194624331.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.638 kcal (2) G-P(sol) polarization free energy of solvation -32.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds