Wall clock time and date at job start Tue Mar 31 2020 05:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46998 * 2 1 4 4 C 1.53000 * 109.47443 * 119.99499 * 2 1 3 5 5 H 1.08997 * 109.47182 * 295.34356 * 4 2 1 6 6 C 1.50694 * 109.47211 * 175.33977 * 4 2 1 7 7 O 1.21286 * 119.99867 * 265.94341 * 6 4 2 8 8 N 1.34771 * 120.00367 * 85.94047 * 6 4 2 9 9 C 1.46497 * 120.00440 * 184.10445 * 8 6 4 10 10 H 1.09000 * 109.47188 * 35.00306 * 9 8 6 11 11 C 1.53002 * 109.47501 * 275.00407 * 9 8 6 12 12 C 1.50701 * 109.47063 * 155.00068 * 9 8 6 13 13 H 1.07995 * 120.00161 * 33.86596 * 12 9 8 14 14 C 1.37880 * 119.99916 * 213.85615 * 12 9 8 15 15 N 1.31517 * 119.99878 * 180.44279 * 14 12 9 16 16 Si 1.86798 * 120.00135 * 0.44917 * 14 12 9 17 17 H 1.48499 * 109.47307 * 88.90660 * 16 14 12 18 18 H 1.48500 * 109.47251 * 208.90917 * 16 14 12 19 19 H 1.48506 * 109.46993 * 328.90955 * 16 14 12 20 20 N 1.46505 * 109.46696 * 55.34167 * 4 2 1 21 21 C 1.46760 * 124.35040 * 54.98767 * 20 4 2 22 22 C 1.54481 * 105.47280 * 196.99459 * 21 20 4 23 23 C 1.54630 * 101.76649 * 334.58471 * 22 21 20 24 24 C 1.34416 * 124.34741 * 234.96285 * 20 4 2 25 25 O 1.21287 * 124.94372 * 359.34882 * 24 20 4 26 26 H 1.09006 * 109.47050 * 294.46731 * 1 2 3 27 27 H 1.08995 * 109.47225 * 54.46312 * 1 2 3 28 28 H 1.09000 * 109.47113 * 174.47050 * 1 2 3 29 29 H 1.08996 * 109.47233 * 240.00208 * 2 1 3 30 30 H 1.09007 * 109.46765 * 297.73507 * 3 2 1 31 31 H 1.09000 * 109.46995 * 57.73331 * 3 2 1 32 32 H 1.08997 * 109.47221 * 177.74106 * 3 2 1 33 33 H 0.97000 * 119.99544 * 4.11155 * 8 6 4 34 34 H 1.08992 * 109.47153 * 184.92594 * 11 9 8 35 35 H 1.09004 * 109.46582 * 304.92779 * 11 9 8 36 36 H 1.09002 * 109.47151 * 64.92322 * 11 9 8 37 37 H 0.97005 * 119.99838 * 180.02562 * 15 14 12 38 38 H 1.08998 * 110.25138 * 315.99459 * 21 20 4 39 39 H 1.08995 * 110.24456 * 77.99594 * 21 20 4 40 40 H 1.09004 * 110.96777 * 92.70579 * 22 21 20 41 41 H 1.09004 * 110.97098 * 216.46591 * 22 21 20 42 42 H 1.08996 * 110.48675 * 266.12249 * 23 22 21 43 43 H 1.08999 * 110.48774 * 143.47733 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7211 1.2493 5 1 1.7465 -0.1613 2.1372 6 6 3.5426 -0.8218 1.1929 7 8 4.0670 -1.8164 0.7380 8 7 4.3036 0.1931 1.6478 9 6 5.7610 0.1344 1.5110 10 1 6.0185 -0.3673 0.5782 11 6 6.3529 -0.6430 2.6884 12 6 6.3213 1.5334 1.5003 13 1 5.8528 2.3073 2.0900 14 6 7.4323 1.8252 0.7375 15 7 7.9264 3.0440 0.7349 16 14 8.2354 0.4895 -0.2922 17 1 7.6021 0.4515 -1.6348 18 1 9.6846 0.7798 -0.4365 19 1 8.0579 -0.8247 0.3761 20 7 1.4623 -2.0662 1.3067 21 6 1.5625 -3.0573 0.2290 22 6 0.4747 -4.1105 0.5351 23 6 0.3170 -3.9650 2.0665 24 6 0.7726 -2.5512 2.3536 25 8 0.5521 -1.9455 3.3810 26 1 -0.3633 0.4257 0.9354 27 1 -0.3633 0.5973 -0.8362 28 1 -0.3633 -1.0229 -0.0990 29 1 1.8933 -0.5138 -0.8900 30 1 1.7101 1.9445 -0.9097 31 1 1.6438 1.9680 0.8690 32 1 3.1292 1.4429 0.0405 33 1 3.8863 0.9626 2.0658 34 1 7.4410 -0.6122 2.6339 35 1 6.0230 -0.1918 3.6242 36 1 6.0162 -1.6789 2.6459 37 1 8.7078 3.2493 0.1980 38 1 1.3711 -2.5867 -0.7353 39 1 2.5488 -3.5213 0.2338 40 1 -0.4566 -3.8698 0.0224 41 1 0.8159 -5.1117 0.2715 42 1 0.9519 -4.6831 2.5853 43 1 -0.7254 -4.0963 2.3568 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194624331.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:51 Heat of formation + Delta-G solvation = -104.535111 kcal Electronic energy + Delta-G solvation = -23743.964487 eV Core-core repulsion = 20401.764295 eV Total energy + Delta-G solvation = -3342.200192 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.94923 -40.36234 -37.76853 -36.69498 -36.63743 -34.37533 -32.73185 -31.75385 -28.48390 -28.19105 -27.76792 -27.32700 -23.31678 -23.01045 -21.49552 -21.35870 -20.43765 -19.27331 -18.08319 -17.93153 -17.53638 -17.02414 -16.19947 -16.02823 -15.98086 -15.24045 -14.98460 -14.68974 -14.65828 -14.57987 -14.25542 -13.90820 -13.73017 -13.64234 -13.28179 -13.22971 -13.09577 -12.99280 -12.83719 -12.49475 -12.31469 -12.25000 -12.03534 -11.88868 -11.83818 -11.78689 -11.25034 -11.07216 -10.89455 -10.82069 -9.85607 -9.61850 -8.39603 -6.46487 1.27600 1.32666 1.43105 1.43559 1.59669 1.89038 2.25876 2.50382 3.01414 3.40365 3.60402 3.72289 3.77336 3.86879 4.07044 4.17514 4.23713 4.32534 4.40036 4.51944 4.67757 4.71160 4.75482 4.77731 4.80971 4.86168 4.92701 4.96864 5.02291 5.09381 5.12099 5.26179 5.30515 5.32300 5.36811 5.39279 5.45601 5.68074 6.08101 6.14066 6.57675 6.79358 7.08571 7.17978 7.33780 8.75350 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022579 B = 0.005134 C = 0.004843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.773855 B = 5452.283627 C = 5780.304266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.088 4.088 3 C -0.158 4.158 4 C 0.144 3.856 5 H 0.105 0.895 6 C 0.495 3.505 7 O -0.578 6.578 8 N -0.699 5.699 9 C 0.239 3.761 10 H 0.033 0.967 11 C -0.143 4.143 12 C -0.525 4.525 13 H 0.055 0.945 14 C 0.035 3.965 15 N -0.929 5.929 16 Si 0.926 3.074 17 H -0.272 1.272 18 H -0.278 1.278 19 H -0.255 1.255 20 N -0.595 5.595 21 C 0.095 3.905 22 C -0.114 4.114 23 C -0.144 4.144 24 C 0.503 3.497 25 O -0.584 6.584 26 H 0.050 0.950 27 H 0.077 0.923 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.045 0.955 33 H 0.403 0.597 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.032 0.968 37 H 0.271 0.729 38 H 0.087 0.913 39 H 0.064 0.936 40 H 0.103 0.897 41 H 0.113 0.887 42 H 0.111 0.889 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.623 -12.451 -3.990 21.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.107 4.107 3 C -0.216 4.216 4 C 0.037 3.963 5 H 0.123 0.877 6 C 0.280 3.720 7 O -0.459 6.459 8 N -0.348 5.348 9 C 0.135 3.865 10 H 0.051 0.949 11 C -0.201 4.201 12 C -0.564 4.564 13 H 0.073 0.927 14 C -0.166 4.166 15 N -0.568 5.568 16 Si 0.751 3.249 17 H -0.197 1.197 18 H -0.203 1.203 19 H -0.179 1.179 20 N -0.327 5.327 21 C -0.026 4.026 22 C -0.151 4.151 23 C -0.184 4.184 24 C 0.293 3.707 25 O -0.465 6.465 26 H 0.070 0.930 27 H 0.096 0.904 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.238 0.762 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.051 0.949 37 H 0.080 0.920 38 H 0.105 0.895 39 H 0.083 0.917 40 H 0.121 0.879 41 H 0.132 0.868 42 H 0.129 0.871 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -17.159 -12.647 -3.870 21.665 hybrid contribution 1.031 0.460 -0.021 1.129 sum -16.129 -12.187 -3.891 20.586 Atomic orbital electron populations 1.21710 0.91980 1.02595 1.02523 1.21277 0.98134 0.96193 0.95133 1.21978 1.01224 0.94728 1.03660 1.20980 0.88319 0.84683 1.02365 0.87678 1.21425 0.90299 0.82867 0.77391 1.90584 1.75594 1.31489 1.48230 1.46504 1.07993 1.21098 1.59231 1.18840 0.77746 0.95080 0.94796 0.94924 1.22149 1.00446 0.97955 0.99599 1.21129 1.12924 0.94213 1.28099 0.92725 1.25582 0.97147 0.96952 0.96877 1.69980 1.24318 1.20858 1.41607 0.86061 0.78180 0.80812 0.79866 1.19695 1.20298 1.17939 1.48095 1.52281 1.13239 1.19081 1.22323 1.00538 0.89456 0.90329 1.22658 0.99120 1.00007 0.93345 1.22361 1.05142 0.91700 0.99208 1.21866 0.76947 0.90244 0.81663 1.90685 1.60479 1.66567 1.28787 0.93046 0.90405 0.91928 0.90556 0.90282 0.91295 0.93574 0.76226 0.92998 0.92873 0.94902 0.92003 0.89451 0.91749 0.87883 0.86837 0.87074 0.86132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 8.89 71.98 0.64 -1.81 16 2 C -0.09 -2.12 2.14 -10.79 -0.02 -2.14 16 3 C -0.16 -4.00 8.78 71.98 0.63 -3.37 16 4 C 0.14 4.28 2.26 44.24 0.10 4.38 16 5 H 0.11 3.25 7.55 -2.39 -0.02 3.24 16 6 C 0.49 18.76 6.42 87.66 0.56 19.32 16 7 O -0.58 -24.92 14.53 -3.05 -0.04 -24.97 16 8 N -0.70 -28.27 3.85 -446.11 -1.72 -29.99 16 9 C 0.24 11.32 2.09 44.25 0.09 11.41 16 10 H 0.03 1.66 4.99 -2.39 -0.01 1.65 16 11 C -0.14 -6.34 9.31 71.98 0.67 -5.67 16 12 C -0.53 -28.26 9.05 25.60 0.23 -28.03 16 13 H 0.05 3.15 8.06 -2.91 -0.02 3.13 16 14 C 0.04 1.95 5.47 84.65 0.46 2.41 16 15 N -0.93 -54.91 13.96 21.45 0.30 -54.61 16 16 Si 0.93 43.81 26.63 68.60 1.83 45.64 16 17 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 18 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 19 H -0.26 -11.81 6.56 99.48 0.65 -11.16 16 20 N -0.60 -15.84 1.84 -798.22 -1.47 -17.31 16 21 C 0.10 1.96 5.97 86.83 0.52 2.48 16 22 C -0.11 -1.33 7.18 31.65 0.23 -1.11 16 23 C -0.14 -2.35 6.86 30.59 0.21 -2.14 16 24 C 0.50 13.83 8.02 87.90 0.71 14.54 16 25 O -0.58 -21.07 17.36 -3.05 -0.05 -21.12 16 26 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 27 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.06 1.08 7.42 -2.39 -0.02 1.06 16 29 H 0.08 1.90 7.36 -2.39 -0.02 1.88 16 30 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 31 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.05 1.47 6.21 -2.39 -0.01 1.46 16 33 H 0.40 14.91 8.18 -92.71 -0.76 14.15 16 34 H 0.05 2.30 7.64 -2.39 -0.02 2.28 16 35 H 0.05 2.23 8.14 -2.38 -0.02 2.21 16 36 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.27 15.01 8.31 -92.70 -0.77 14.24 16 38 H 0.09 1.59 7.10 -2.39 -0.02 1.57 16 39 H 0.06 1.65 7.04 -2.39 -0.02 1.63 16 40 H 0.10 0.80 8.14 -2.38 -0.02 0.78 16 41 H 0.11 0.86 8.14 -2.38 -0.02 0.85 16 42 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -71.12 342.64 4.06 -67.06 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: 0.19 Total: 25.01 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: 5.03 Total: 10.29 kcal Atomic # 7 Polarization: -99.02 SS G_CDS: -2.89 Total: -101.91 kcal Atomic # 8 Polarization: -46.00 SS G_CDS: -0.10 Total: -46.09 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.83 Total: 45.64 kcal Total: -71.12 4.06 -67.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194624331.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.475 kcal (2) G-P(sol) polarization free energy of solvation -71.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds