Wall clock time and date at job start Tue Mar 31 2020 05:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47573 * 2 1 4 4 C 1.50697 * 109.46755 * 119.99830 * 2 1 3 5 5 H 1.08004 * 120.00107 * 119.99550 * 4 2 1 6 6 C 1.37882 * 120.00160 * 299.99761 * 4 2 1 7 7 N 1.31519 * 119.99953 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99817 * 0.02562 * 6 4 2 9 9 H 1.48505 * 109.46947 * 90.00011 * 8 6 4 10 10 H 1.48503 * 109.46915 * 209.99914 * 8 6 4 11 11 H 1.48495 * 109.47084 * 330.00249 * 8 6 4 12 12 N 1.46496 * 109.47139 * 239.99765 * 2 1 3 13 13 C 1.34772 * 120.00214 * 85.00355 * 12 2 1 14 14 O 1.21281 * 119.99940 * 359.97438 * 13 12 2 15 15 C 1.50703 * 120.00069 * 180.02562 * 13 12 2 16 16 N 1.46506 * 109.46877 * 179.97438 * 15 13 12 17 17 C 1.44872 * 112.61240 * 89.99999 * 16 15 13 18 18 C 1.53186 * 111.78771 * 180.19829 * 17 16 15 19 19 C 1.53051 * 109.10673 * 279.36840 * 18 17 16 20 20 C 1.51488 * 111.50722 * 58.25021 * 19 18 17 21 21 C 1.52463 * 107.04788 * 66.74907 * 20 19 18 22 22 C 1.53066 * 110.86516 * 282.13042 * 21 20 19 23 23 C 1.32036 * 112.61581 * 269.76196 * 16 15 13 24 24 O 1.21283 * 118.29202 * 351.59365 * 23 16 15 25 25 H 1.08995 * 109.47573 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47317 * 300.00357 * 1 2 3 27 27 H 1.09002 * 109.46974 * 59.99692 * 1 2 3 28 28 H 0.96996 * 119.99825 * 180.02562 * 7 6 4 29 29 H 0.97000 * 119.99972 * 265.00356 * 12 2 1 30 30 H 1.09000 * 109.46978 * 60.00374 * 15 13 12 31 31 H 1.09000 * 109.46976 * 299.99619 * 15 13 12 32 32 H 1.09003 * 109.01724 * 300.79640 * 17 16 15 33 33 H 1.09002 * 109.01375 * 59.60843 * 17 16 15 34 34 H 1.09002 * 109.53217 * 39.25401 * 18 17 16 35 35 H 1.09000 * 109.52935 * 159.47525 * 18 17 16 36 36 H 1.08993 * 109.07520 * 178.77696 * 19 18 17 37 37 H 1.09003 * 109.06784 * 297.79988 * 19 18 17 38 38 H 1.09004 * 109.93691 * 186.13506 * 20 19 18 39 39 H 1.09001 * 109.93812 * 307.28007 * 20 19 18 40 40 H 1.08998 * 109.20133 * 42.49178 * 21 20 19 41 41 H 1.09001 * 109.19782 * 161.77298 * 21 20 19 42 42 H 1.08997 * 109.62162 * 83.93677 * 22 21 20 43 43 H 1.09007 * 109.62029 * 204.29627 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6531 -1.5886 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 2.1379 -0.8590 3.5566 8 14 0.6247 1.2792 2.6541 9 1 -0.8029 0.8728 2.6997 10 1 0.9758 1.9952 3.9068 11 1 0.8470 2.1765 1.4919 12 7 2.0183 -0.6906 -1.1961 13 6 2.1471 -0.0184 -2.3571 14 8 1.8583 1.1583 -2.4117 15 6 2.6489 -0.7290 -3.5876 16 7 2.6978 0.2122 -4.7093 17 6 3.9726 0.8931 -4.8099 18 6 4.0013 1.8754 -5.9850 19 6 4.2749 1.1026 -7.2775 20 6 3.2272 0.0353 -7.5187 21 6 1.9101 0.7546 -7.7876 22 6 1.2852 1.2539 -6.4826 23 6 1.5716 0.2404 -5.3979 24 8 0.7216 -0.5865 -5.1438 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.9032 -0.5277 4.4376 29 1 2.2489 -1.6318 -1.1525 30 1 1.9759 -1.5507 -3.8325 31 1 3.6480 -1.1216 -3.3985 32 1 4.1573 1.4398 -3.8852 33 1 4.7608 0.1526 -4.9466 34 1 3.0391 2.3820 -6.0601 35 1 4.7901 2.6107 -5.8261 36 1 4.2736 1.7989 -8.1159 37 1 5.2545 0.6296 -7.2090 38 1 3.5041 -0.5687 -8.3828 39 1 3.1327 -0.5988 -6.6371 40 1 2.0934 1.6042 -8.4454 41 1 1.2193 0.0670 -8.2757 42 1 1.7216 2.2155 -6.2123 43 1 0.2083 1.3639 -6.6110 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194640919.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:03 Heat of formation + Delta-G solvation = -53.488791 kcal Electronic energy + Delta-G solvation = -23421.735486 eV Core-core repulsion = 20081.748828 eV Total energy + Delta-G solvation = -3339.986658 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.15907 -38.74738 -37.19233 -35.50043 -34.68091 -32.38320 -31.93258 -30.38209 -29.30532 -26.80861 -25.99582 -25.12991 -22.35126 -21.73477 -20.72366 -19.59603 -18.79697 -17.60544 -16.78868 -16.64639 -16.33942 -15.77222 -15.41506 -15.09296 -14.43313 -14.17478 -14.01637 -13.81488 -13.48144 -12.97964 -12.85629 -12.83023 -12.68593 -12.25911 -12.15827 -11.96942 -11.75977 -11.56845 -11.49665 -11.14153 -11.02274 -10.96283 -10.79775 -10.17300 -10.16436 -9.73118 -9.62316 -9.41662 -9.20729 -8.74499 -8.49870 -8.11640 -6.19852 -4.22061 2.68395 2.98270 3.24544 3.27466 3.36277 3.41514 4.09120 4.33194 4.40762 4.47463 4.51079 4.62961 4.78621 4.96487 5.00832 5.15018 5.24426 5.27569 5.38875 5.40561 5.42146 5.54734 5.60556 5.68502 5.72365 5.74018 5.83634 5.88346 6.01583 6.09035 6.23790 6.35718 6.43669 6.61504 6.89857 7.23168 7.32161 7.54876 7.63818 8.14286 8.21770 8.55538 8.77264 8.96590 9.41507 10.92337 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034248 B = 0.003971 C = 0.003890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.363847 B = 7048.696996 C = 7195.566855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.238 3.762 3 H 0.047 0.953 4 C -0.534 4.534 5 H 0.080 0.920 6 C 0.078 3.922 7 N -0.893 5.893 8 Si 0.886 3.114 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.263 1.263 12 N -0.700 5.700 13 C 0.493 3.507 14 O -0.553 6.553 15 C 0.055 3.945 16 N -0.579 5.579 17 C 0.127 3.873 18 C -0.152 4.152 19 C -0.119 4.119 20 C -0.137 4.137 21 C -0.113 4.113 22 C -0.144 4.144 23 C 0.537 3.463 24 O -0.553 6.553 25 H 0.053 0.947 26 H 0.046 0.954 27 H 0.035 0.965 28 H 0.267 0.733 29 H 0.395 0.605 30 H 0.121 0.879 31 H 0.101 0.899 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.097 0.903 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.922 3.042 -22.477 23.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.134 3.866 3 H 0.065 0.935 4 C -0.572 4.572 5 H 0.098 0.902 6 C -0.125 4.125 7 N -0.530 5.530 8 Si 0.716 3.284 9 H -0.203 1.203 10 H -0.222 1.222 11 H -0.188 1.188 12 N -0.349 5.349 13 C 0.277 3.723 14 O -0.432 6.432 15 C -0.072 4.072 16 N -0.310 5.310 17 C 0.005 3.995 18 C -0.189 4.189 19 C -0.156 4.156 20 C -0.175 4.175 21 C -0.151 4.151 22 C -0.183 4.183 23 C 0.326 3.674 24 O -0.432 6.432 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.054 0.946 28 H 0.077 0.923 29 H 0.229 0.771 30 H 0.139 0.861 31 H 0.119 0.881 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.099 0.901 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.114 0.886 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.296 3.538 -22.257 22.942 hybrid contribution -0.418 0.339 0.456 0.705 sum 3.877 3.877 -21.801 22.480 Atomic orbital electron populations 1.22434 0.99330 1.00891 0.99176 1.19074 0.90139 0.94551 0.82801 0.93535 1.21052 1.33213 1.14384 0.88550 0.90177 1.24829 0.95470 0.96710 0.95524 1.69871 1.44971 1.40146 0.98026 0.86866 0.80614 0.83605 0.77311 1.20297 1.22186 1.18772 1.46141 1.65154 1.13813 1.09745 1.20842 0.78720 0.87810 0.84965 1.90630 1.51308 1.16163 1.85066 1.21711 1.04057 0.94906 0.86559 1.46540 1.13749 1.42274 1.28430 1.21286 0.83011 0.95498 0.99753 1.22301 1.04361 0.98271 0.93947 1.21399 0.98993 0.97733 0.97479 1.21580 0.94997 0.98227 1.02696 1.21431 0.97060 1.00696 0.95906 1.22290 1.03385 0.98632 0.93998 1.19644 0.80411 0.85342 0.81973 1.90719 1.44257 1.39872 1.68338 0.92798 0.93571 0.94611 0.92309 0.77139 0.86146 0.88097 0.90737 0.91184 0.89280 0.90077 0.91796 0.92039 0.91372 0.90511 0.90952 0.91553 0.88557 0.88694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.78 8.96 37.16 0.33 -3.45 16 2 C 0.24 5.83 2.15 -69.09 -0.15 5.69 16 3 H 0.05 1.25 6.64 -51.93 -0.34 0.91 16 4 C -0.53 -14.61 9.31 -34.44 -0.32 -14.93 16 5 H 0.08 2.29 7.98 -52.48 -0.42 1.87 16 6 C 0.08 2.22 5.45 -17.82 -0.10 2.12 16 7 N -0.89 -26.64 13.96 55.43 0.77 -25.87 16 8 Si 0.89 22.18 24.37 -169.99 -4.14 18.04 16 9 H -0.28 -6.73 6.87 56.52 0.39 -6.35 16 10 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 11 H -0.26 -6.57 6.53 56.52 0.37 -6.20 16 12 N -0.70 -14.28 5.07 -54.94 -0.28 -14.56 16 13 C 0.49 9.55 7.77 -10.99 -0.09 9.46 16 14 O -0.55 -12.64 16.02 5.56 0.09 -12.55 16 15 C 0.06 0.80 5.38 -5.19 -0.03 0.77 16 16 N -0.58 -7.72 1.50 -176.79 -0.27 -7.98 16 17 C 0.13 1.31 5.19 -4.82 -0.02 1.28 16 18 C -0.15 -1.22 5.63 -26.61 -0.15 -1.37 16 19 C -0.12 -0.81 5.21 -27.47 -0.14 -0.96 16 20 C -0.14 -1.13 5.64 -27.77 -0.16 -1.29 16 21 C -0.11 -0.95 5.61 -26.97 -0.15 -1.10 16 22 C -0.14 -1.58 5.53 -27.61 -0.15 -1.73 16 23 C 0.54 7.92 5.23 -11.95 -0.06 7.86 16 24 O -0.55 -10.25 15.59 5.56 0.09 -10.16 16 25 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 26 H 0.05 1.11 3.27 -51.93 -0.17 0.94 16 27 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.27 7.48 8.31 -40.82 -0.34 7.15 16 29 H 0.40 7.04 8.54 -40.82 -0.35 6.70 16 30 H 0.12 1.79 6.58 -51.93 -0.34 1.45 16 31 H 0.10 1.12 7.79 -51.93 -0.40 0.71 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.58 7.88 -51.93 -0.41 0.17 16 34 H 0.09 0.79 4.13 -51.93 -0.21 0.57 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.38 7.84 -51.93 -0.41 -0.03 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.79 4.91 -51.93 -0.25 0.53 16 40 H 0.07 0.48 7.72 -51.93 -0.40 0.07 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.10 0.95 5.09 -51.93 -0.26 0.69 16 43 H 0.09 1.05 8.14 -51.92 -0.42 0.63 16 LS Contribution 325.89 15.07 4.91 4.91 Total: -1.00 -34.38 325.89 -6.56 -40.94 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -6.54 Total: 4.88 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: -1.19 Total: 2.35 kcal Atomic # 7 Polarization: -48.63 SS G_CDS: 0.23 Total: -48.40 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: 0.18 Total: -22.71 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.14 Total: 18.04 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.38 -6.56 -40.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194640919.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.551 kcal (2) G-P(sol) polarization free energy of solvation -34.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds