Wall clock time and date at job start Tue Mar 31 2020 05:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46885 * 2 1 4 4 C 1.50699 * 109.47261 * 239.99767 * 2 1 3 5 5 H 1.07996 * 120.00063 * 239.99800 * 4 2 1 6 6 C 1.37881 * 119.99979 * 60.00290 * 4 2 1 7 7 N 1.31518 * 119.99584 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00089 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46923 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.46954 * 119.99512 * 8 6 4 11 11 H 1.48493 * 109.47145 * 239.99533 * 8 6 4 12 12 N 1.46496 * 109.46916 * 119.99737 * 2 1 3 13 13 C 1.34777 * 120.00271 * 274.99861 * 12 2 1 14 14 O 1.21278 * 119.99854 * 0.02562 * 13 12 2 15 15 C 1.50703 * 120.00161 * 180.02562 * 13 12 2 16 16 N 1.46505 * 109.47064 * 180.02562 * 15 13 12 17 17 C 1.44876 * 112.61172 * 90.00089 * 16 15 13 18 18 C 1.53185 * 111.78599 * 180.20356 * 17 16 15 19 19 C 1.53057 * 109.09921 * 279.36605 * 18 17 16 20 20 C 1.51485 * 111.50788 * 58.25683 * 19 18 17 21 21 C 1.52457 * 107.05185 * 66.74577 * 20 19 18 22 22 C 1.53075 * 110.86562 * 282.13244 * 21 20 19 23 23 C 1.32029 * 112.61470 * 269.76797 * 16 15 13 24 24 O 1.21280 * 118.29226 * 351.58847 * 23 16 15 25 25 H 1.09000 * 109.46953 * 60.00208 * 1 2 3 26 26 H 1.09005 * 109.46885 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.47341 * 299.99907 * 1 2 3 28 28 H 0.97007 * 119.99216 * 180.02562 * 7 6 4 29 29 H 0.97005 * 120.00266 * 95.00444 * 12 2 1 30 30 H 1.09002 * 109.47152 * 60.00245 * 15 13 12 31 31 H 1.09001 * 109.46980 * 300.00345 * 15 13 12 32 32 H 1.08994 * 109.01788 * 300.79642 * 17 16 15 33 33 H 1.08996 * 109.01566 * 59.61155 * 17 16 15 34 34 H 1.08998 * 109.53369 * 39.24732 * 18 17 16 35 35 H 1.08996 * 109.53304 * 159.48137 * 18 17 16 36 36 H 1.09000 * 109.07174 * 178.77753 * 19 18 17 37 37 H 1.09002 * 109.06909 * 297.79757 * 19 18 17 38 38 H 1.09007 * 109.93643 * 186.13230 * 20 19 18 39 39 H 1.09001 * 109.93382 * 307.27561 * 20 19 18 40 40 H 1.09003 * 109.20383 * 42.48760 * 21 20 19 41 41 H 1.09003 * 109.20214 * 161.77894 * 21 20 19 42 42 H 1.08991 * 109.61975 * 83.92931 * 22 21 20 43 43 H 1.08999 * 109.61949 * 204.48322 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 3.1485 -2.2857 -3.6037 10 1 1.1679 -1.5867 -4.8164 11 1 3.1473 -0.1858 -4.8160 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8582 1.1584 2.4117 15 6 2.6499 -0.7284 3.5875 16 7 2.6985 0.2128 4.7091 17 6 1.4611 0.2467 5.4619 18 6 1.5309 1.2398 6.6261 19 6 2.2648 0.5855 7.7991 20 6 3.6607 0.1476 7.4062 21 6 4.4636 1.4127 7.1248 22 6 4.1166 1.9837 5.7475 23 6 3.8615 0.8306 4.8034 24 8 4.7704 0.4565 4.0929 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 0.7083 1.1608 -3.4845 29 1 2.2491 -1.6317 1.1527 30 1 3.6492 -1.1202 3.3980 31 1 1.9777 -1.5508 3.8325 32 1 0.6482 0.5365 4.7961 33 1 1.2578 -0.7489 5.8560 34 1 2.0704 2.1331 6.3114 35 1 0.5214 1.5119 6.9340 36 1 2.3334 1.3000 8.6195 37 1 1.6997 -0.2852 8.1317 38 1 4.1193 -0.4096 8.2232 39 1 3.6173 -0.4733 6.5114 40 1 4.2387 2.1574 7.8885 41 1 5.5273 1.1770 7.1574 42 1 3.2226 2.6025 5.8226 43 1 4.9496 2.5823 5.3791 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194640932.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:05 Heat of formation + Delta-G solvation = -61.478855 kcal Electronic energy + Delta-G solvation = -23334.199928 eV Core-core repulsion = 19993.866795 eV Total energy + Delta-G solvation = -3340.333133 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.07207 -38.55040 -37.12298 -35.35675 -34.51405 -32.34765 -31.86716 -29.92196 -28.83448 -26.59956 -25.90157 -25.21580 -22.28609 -21.61215 -20.66477 -19.39863 -18.73138 -17.47283 -16.74616 -16.56687 -16.11729 -15.52365 -15.29811 -14.89478 -14.33399 -14.12133 -13.86737 -13.77017 -13.46710 -12.82837 -12.75539 -12.63947 -12.36198 -12.17984 -11.91392 -11.68164 -11.47762 -11.38486 -11.07141 -10.97819 -10.91561 -10.90575 -10.69926 -10.27910 -10.21797 -10.12008 -9.53761 -9.35064 -9.01337 -8.54417 -8.37091 -7.86485 -6.09545 -4.18291 2.77483 3.06994 3.26117 3.33846 3.37041 3.44365 4.21392 4.43795 4.46446 4.53325 4.56407 4.68019 4.84752 5.02372 5.06693 5.22801 5.30084 5.32940 5.45128 5.46446 5.53951 5.61184 5.67425 5.75003 5.77797 5.81217 5.89045 5.93431 6.07235 6.15423 6.30878 6.83516 6.96717 7.17003 7.49717 7.59508 7.71997 7.72644 7.94844 8.17649 8.28348 8.71008 8.81979 9.17218 9.49282 10.96555 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.035579 B = 0.003755 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.795568 B = 7455.510792 C = 7760.006811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.264 3.736 3 H 0.047 0.953 4 C -0.531 4.531 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.708 5.708 13 C 0.491 3.509 14 O -0.552 6.552 15 C 0.055 3.945 16 N -0.579 5.579 17 C 0.128 3.872 18 C -0.152 4.152 19 C -0.118 4.118 20 C -0.137 4.137 21 C -0.113 4.113 22 C -0.144 4.144 23 C 0.537 3.463 24 O -0.552 6.552 25 H 0.090 0.910 26 H 0.026 0.974 27 H 0.013 0.987 28 H 0.263 0.737 29 H 0.388 0.612 30 H 0.119 0.881 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.097 0.903 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.185 -2.242 21.193 21.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.163 3.837 3 H 0.065 0.935 4 C -0.570 4.570 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.522 5.522 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.356 5.356 13 C 0.274 3.726 14 O -0.430 6.430 15 C -0.073 4.073 16 N -0.310 5.310 17 C 0.006 3.994 18 C -0.189 4.189 19 C -0.156 4.156 20 C -0.175 4.175 21 C -0.151 4.151 22 C -0.183 4.183 23 C 0.326 3.674 24 O -0.430 6.430 25 H 0.108 0.892 26 H 0.045 0.955 27 H 0.032 0.968 28 H 0.073 0.927 29 H 0.221 0.779 30 H 0.137 0.863 31 H 0.115 0.885 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.115 0.885 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.354 -1.382 20.796 20.886 hybrid contribution 0.208 -0.877 -0.971 1.325 sum 1.562 -2.259 19.825 20.014 Atomic orbital electron populations 1.22060 0.98496 0.98997 1.00780 1.18727 0.90925 0.94001 0.80090 0.93528 1.21274 1.32217 1.13175 0.90333 0.91989 1.24897 0.94836 0.94969 0.99080 1.69922 1.36052 1.22549 1.23700 0.86386 0.78579 0.79558 0.82543 1.19698 1.20899 1.20879 1.46477 1.65099 1.13556 1.10467 1.20767 0.78727 0.87918 0.85168 1.90631 1.51254 1.15977 1.85183 1.21733 1.05139 0.93208 0.87226 1.46524 1.13192 1.42079 1.29237 1.21258 0.85024 0.99857 0.93295 1.22303 1.02033 0.99805 0.94763 1.21398 0.95953 1.00465 0.97745 1.21578 0.95658 0.97684 1.02578 1.21432 1.00674 0.97670 0.95305 1.22297 1.04220 0.96689 0.95093 1.19639 0.81140 0.83482 0.83164 1.90725 1.41650 1.65355 1.45309 0.89189 0.95510 0.96824 0.92689 0.77939 0.86317 0.88481 0.90820 0.91348 0.89219 0.90123 0.91814 0.92111 0.91424 0.90505 0.90976 0.91567 0.88543 0.88659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.64 9.26 37.16 0.34 -3.30 16 2 C 0.26 6.93 2.56 -69.08 -0.18 6.76 16 3 H 0.05 1.43 7.58 -51.93 -0.39 1.03 16 4 C -0.53 -14.48 8.73 -34.44 -0.30 -14.78 16 5 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -25.40 11.32 55.43 0.63 -24.77 16 8 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 9 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 N -0.71 -15.23 5.07 -54.93 -0.28 -15.51 16 13 C 0.49 10.12 7.77 -10.98 -0.09 10.04 16 14 O -0.55 -13.49 16.02 5.56 0.09 -13.41 16 15 C 0.05 0.84 5.37 -5.19 -0.03 0.81 16 16 N -0.58 -8.20 1.50 -176.79 -0.27 -8.47 16 17 C 0.13 1.39 5.19 -4.82 -0.02 1.36 16 18 C -0.15 -1.30 5.63 -26.61 -0.15 -1.45 16 19 C -0.12 -0.86 5.21 -27.47 -0.14 -1.00 16 20 C -0.14 -1.19 5.64 -27.77 -0.16 -1.35 16 21 C -0.11 -1.01 5.61 -26.97 -0.15 -1.17 16 22 C -0.14 -1.69 5.54 -27.60 -0.15 -1.85 16 23 C 0.54 8.43 5.23 -11.95 -0.06 8.37 16 24 O -0.55 -10.87 15.59 5.56 0.09 -10.79 16 25 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.39 7.20 8.54 -40.82 -0.35 6.85 16 30 H 0.12 1.90 6.58 -51.93 -0.34 1.56 16 31 H 0.10 1.13 7.78 -51.93 -0.40 0.73 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.59 7.88 -51.93 -0.41 0.19 16 34 H 0.09 0.85 4.13 -51.93 -0.21 0.63 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.40 7.84 -51.93 -0.41 -0.01 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.83 4.91 -51.93 -0.25 0.57 16 40 H 0.07 0.51 7.72 -51.93 -0.40 0.11 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.10 1.03 5.09 -51.93 -0.26 0.77 16 43 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 332.70 15.07 5.01 5.01 Total: -1.00 -34.01 332.70 -7.61 -41.62 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -6.68 Total: 6.11 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: -1.18 Total: 4.15 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: 0.08 Total: -48.75 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: 0.18 Total: -24.19 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.01 -7.61 -41.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194640932.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.860 kcal (2) G-P(sol) polarization free energy of solvation -34.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds