Wall clock time and date at job start Tue Mar 31 2020 06:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45206 * 109.47093 * 2 1 4 4 C 1.34627 * 116.99809 * 179.97438 * 3 2 1 5 5 O 1.21510 * 120.00539 * 0.02562 * 4 3 2 6 6 N 1.34786 * 119.99811 * 179.97438 * 4 3 2 7 7 C 1.47077 * 120.88003 * 179.97438 * 6 4 3 8 8 C 1.53235 * 108.52212 * 231.16490 * 7 6 4 9 9 N 1.46899 * 109.34034 * 306.17085 * 8 7 6 10 10 C 1.46894 * 111.00331 * 187.25325 * 9 8 7 11 11 C 1.52996 * 109.47488 * 163.70535 * 10 9 8 12 12 C 1.50702 * 115.54944 * 305.35176 * 11 10 9 13 13 H 1.08000 * 120.00211 * 115.41233 * 12 11 10 14 14 C 1.37882 * 120.00068 * 295.42010 * 12 11 10 15 15 N 1.31519 * 119.99961 * 177.97476 * 14 12 11 16 16 Si 1.86799 * 119.99817 * 358.24621 * 14 12 11 17 17 H 1.48500 * 109.47006 * 93.35697 * 16 14 12 18 18 H 1.48500 * 109.46924 * 213.35565 * 16 14 12 19 19 H 1.48500 * 109.47278 * 333.35493 * 16 14 12 20 20 C 1.52999 * 117.50396 * 91.02190 * 11 10 9 21 21 C 1.53003 * 117.50193 * 159.68530 * 11 10 9 22 22 C 1.46909 * 111.26600 * 63.10481 * 9 8 7 23 23 C 1.47074 * 120.87727 * 359.97438 * 6 4 3 24 24 H 1.08999 * 109.47171 * 300.00241 * 1 2 3 25 25 H 1.09005 * 109.47077 * 60.00425 * 1 2 3 26 26 H 1.09005 * 109.46908 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47171 * 239.99759 * 2 1 3 28 28 H 1.09005 * 109.47077 * 119.99575 * 2 1 3 29 29 H 1.09010 * 109.62671 * 111.45597 * 7 6 4 30 30 H 1.09003 * 109.63102 * 350.87885 * 7 6 4 31 31 H 1.08999 * 109.49302 * 186.21585 * 8 7 6 32 32 H 1.08999 * 109.51474 * 66.14697 * 8 7 6 33 33 H 1.09004 * 109.47296 * 43.70005 * 10 9 8 34 34 H 1.09006 * 109.47183 * 283.70651 * 10 9 8 35 35 H 0.96991 * 119.99673 * 179.97438 * 15 14 12 36 36 H 1.08995 * 117.50274 * 215.00379 * 20 11 10 37 37 H 1.09009 * 117.49568 * 0.02562 * 20 11 10 38 38 H 1.09000 * 117.49535 * 359.97145 * 21 11 10 39 39 H 1.09000 * 117.50345 * 144.97366 * 21 11 10 40 40 H 1.08994 * 109.49035 * 56.85391 * 22 9 8 41 41 H 1.09003 * 109.49074 * 176.93371 * 22 9 8 42 42 H 1.09003 * 109.62683 * 248.54418 * 23 6 4 43 43 H 1.08998 * 109.63453 * 9.12500 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3487 1.5454 0.0005 5 8 4.0890 0.5818 0.0005 6 7 3.8639 2.7909 0.0000 7 6 5.3188 3.0060 0.0012 8 6 5.6661 3.9794 1.1325 9 7 4.8582 5.1980 0.9910 10 6 5.2816 6.2250 1.9521 11 6 4.7243 7.5843 1.5248 12 6 5.0591 8.0111 0.1188 13 1 4.2724 8.1287 -0.6117 14 6 6.3699 8.2515 -0.2350 15 7 6.6664 8.5853 -1.4721 16 14 7.7253 8.0957 1.0409 17 1 8.2977 6.7264 0.9902 18 1 8.7915 9.0888 0.7542 19 1 7.1643 8.3480 2.3925 20 6 3.3598 7.9952 2.0817 21 6 4.6319 8.6771 2.5917 22 6 3.4250 4.9063 1.1295 23 6 2.9859 3.9708 -0.0016 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 5.6270 3.4303 -0.9545 30 1 5.8292 2.0569 0.1651 31 1 6.7241 4.2362 1.0794 32 1 5.4533 3.5114 2.0937 33 1 6.3703 6.2708 1.9789 34 1 4.9042 5.9729 2.9432 35 1 7.5885 8.7548 -1.7209 36 1 2.7043 8.5742 1.4313 37 1 2.8593 7.2972 2.7530 38 1 4.9677 8.4274 3.5982 39 1 4.8136 9.7046 2.2768 40 1 3.2431 4.4251 2.0904 41 1 2.8577 5.8354 1.0742 42 1 3.0695 4.4880 -0.9575 43 1 1.9539 3.6597 0.1605 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233690437.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:49 Heat of formation + Delta-G solvation = -36.928104 kcal Electronic energy + Delta-G solvation = -23349.818782 eV Core-core repulsion = 20010.550250 eV Total energy + Delta-G solvation = -3339.268532 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.53889 -38.68193 -37.00783 -36.10992 -33.95211 -31.99747 -31.79325 -30.85173 -28.27352 -25.78585 -24.26481 -23.69772 -23.06888 -21.55242 -21.40963 -19.70091 -18.91818 -17.93796 -16.94266 -16.66969 -16.24533 -15.17931 -14.87792 -14.66861 -14.59771 -14.38614 -14.13890 -13.56927 -13.49707 -13.30694 -12.95365 -12.73416 -12.37711 -12.16170 -11.91843 -11.76657 -11.62380 -11.24952 -11.12046 -10.98958 -10.82909 -10.60714 -10.59365 -10.42070 -10.25637 -10.08994 -9.47784 -8.97562 -8.67311 -8.56030 -8.37541 -7.62868 -5.98753 -3.95805 2.17119 2.88556 3.30396 3.42173 3.45450 3.88241 4.28632 4.50191 4.77131 4.81407 4.95095 5.10210 5.12641 5.22369 5.27647 5.36453 5.45550 5.46182 5.56253 5.58940 5.70752 5.76791 5.84265 5.90463 5.94479 6.07396 6.12287 6.14757 6.19537 6.32152 6.33153 6.45457 6.51580 6.58609 6.73454 7.04235 7.13138 7.42928 7.59293 7.70036 7.88328 8.33862 8.61748 9.03554 9.65696 11.14152 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025084 B = 0.004597 C = 0.004291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.988221 B = 6089.529312 C = 6523.165316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.082 3.918 3 O -0.370 6.370 4 C 0.650 3.350 5 O -0.583 6.583 6 N -0.590 5.590 7 C 0.134 3.866 8 C 0.040 3.960 9 N -0.506 5.506 10 C 0.094 3.906 11 C 0.010 3.990 12 C -0.453 4.453 13 H 0.074 0.926 14 C 0.081 3.919 15 N -0.902 5.902 16 Si 0.869 3.131 17 H -0.282 1.282 18 H -0.297 1.297 19 H -0.256 1.256 20 C -0.188 4.188 21 C -0.196 4.196 22 C 0.046 3.954 23 C 0.117 3.883 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.028 0.972 33 H 0.063 0.937 34 H 0.013 0.987 35 H 0.261 0.739 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.087 0.913 40 H 0.024 0.976 41 H 0.101 0.899 42 H 0.085 0.915 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.044 -12.964 5.347 16.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.007 3.993 3 O -0.284 6.284 4 C 0.404 3.596 5 O -0.474 6.474 6 N -0.330 5.330 7 C 0.013 3.987 8 C -0.089 4.089 9 N -0.229 5.229 10 C -0.033 4.033 11 C 0.009 3.991 12 C -0.491 4.491 13 H 0.092 0.908 14 C -0.120 4.120 15 N -0.541 5.541 16 Si 0.698 3.302 17 H -0.209 1.209 18 H -0.224 1.224 19 H -0.180 1.180 20 C -0.225 4.225 21 C -0.234 4.234 22 C -0.082 4.082 23 C -0.006 4.006 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.098 0.902 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.103 0.897 30 H 0.111 0.889 31 H 0.105 0.895 32 H 0.047 0.953 33 H 0.081 0.919 34 H 0.031 0.969 35 H 0.071 0.929 36 H 0.103 0.897 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.105 0.895 40 H 0.042 0.958 41 H 0.119 0.881 42 H 0.103 0.897 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.648 -13.087 4.743 16.387 hybrid contribution 0.806 -0.418 1.478 1.735 sum -7.842 -13.505 6.221 16.810 Atomic orbital electron populations 1.21822 0.92677 1.02866 1.03594 1.22898 0.94703 0.79116 1.02559 1.86236 1.22340 1.32708 1.87150 1.17986 0.81002 0.84124 0.76483 1.90953 1.59815 1.39538 1.57062 1.47071 1.07974 1.02969 1.74982 1.21800 0.77153 0.99524 1.00205 1.22512 0.99227 0.90950 0.96258 1.61663 1.01920 1.07010 1.52334 1.21833 0.99156 0.92105 0.90251 1.19387 0.95011 0.89818 0.94907 1.20066 0.93567 1.43577 0.91843 0.90770 1.24803 0.98190 0.94398 0.94592 1.69884 1.18883 1.48061 1.17231 0.87045 0.82108 0.77340 0.83740 1.20872 1.22377 1.17982 1.22831 0.91594 1.04249 1.03875 1.23067 1.02679 0.99528 0.98156 1.22480 0.90704 0.99573 0.95477 1.21923 0.93129 0.84741 1.00769 0.91500 0.91398 0.90188 0.91323 0.91442 0.89686 0.88883 0.89473 0.95346 0.91929 0.96877 0.92888 0.89731 0.91421 0.91663 0.89495 0.95830 0.88137 0.89696 0.89338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 10.29 37.16 0.38 -0.73 16 2 C 0.08 0.86 6.19 37.16 0.23 1.09 16 3 O -0.37 -5.07 8.90 -40.29 -0.36 -5.43 16 4 C 0.65 10.42 8.44 54.06 0.46 10.88 16 5 O -0.58 -10.62 15.58 -19.28 -0.30 -10.92 16 6 N -0.59 -9.23 3.01 -178.28 -0.54 -9.77 16 7 C 0.13 2.10 6.60 -3.61 -0.02 2.08 16 8 C 0.04 0.65 5.60 -3.70 -0.02 0.63 16 9 N -0.51 -9.48 4.27 -234.34 -1.00 -10.48 16 10 C 0.09 1.88 4.44 -3.83 -0.02 1.87 16 11 C 0.01 0.22 0.60 -155.66 -0.09 0.13 16 12 C -0.45 -12.01 9.10 -34.44 -0.31 -12.32 16 13 H 0.07 2.18 8.06 -52.49 -0.42 1.76 16 14 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 15 N -0.90 -26.94 13.96 55.43 0.77 -26.17 16 16 Si 0.87 21.01 24.71 -169.99 -4.20 16.81 16 17 H -0.28 -6.69 7.10 56.52 0.40 -6.29 16 18 H -0.30 -7.34 7.11 56.52 0.40 -6.94 16 19 H -0.26 -5.82 5.92 56.52 0.33 -5.48 16 20 C -0.19 -3.58 8.33 -26.69 -0.22 -3.81 16 21 C -0.20 -3.99 8.40 -26.69 -0.22 -4.21 16 22 C 0.05 0.75 5.42 -3.71 -0.02 0.73 16 23 C 0.12 1.72 6.61 -3.62 -0.02 1.70 16 24 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.08 1.37 8.14 -51.92 -0.42 0.95 16 30 H 0.09 1.40 7.06 -51.93 -0.37 1.04 16 31 H 0.09 1.44 7.92 -51.93 -0.41 1.03 16 32 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 1.33 4.49 -51.93 -0.23 1.10 16 34 H 0.01 0.24 8.00 -51.93 -0.42 -0.17 16 35 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 37 H 0.07 1.14 7.97 -51.92 -0.41 0.72 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.09 1.84 8.14 -51.93 -0.42 1.41 16 40 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.10 1.68 5.84 -51.93 -0.30 1.38 16 42 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.09 1.14 6.98 -51.93 -0.36 0.78 16 LS Contribution 338.38 15.07 5.10 5.10 Total: -1.00 -31.04 338.38 -7.71 -38.75 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -7.20 Total: 1.90 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: 0.01 Total: 0.19 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: -0.76 Total: -46.42 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -0.66 Total: -16.35 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.20 Total: 16.81 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.04 -7.71 -38.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233690437.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.825 kcal (2) G-P(sol) polarization free energy of solvation -31.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds