Wall clock time and date at job start Tue Mar 31 2020 05:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42908 * 113.99437 * 2 1 4 4 C 1.52998 * 109.46895 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.50832 * 305.09039 * 4 3 2 6 6 C 1.53094 * 109.50850 * 185.00206 * 4 3 2 7 7 N 1.47011 * 109.26017 * 183.17546 * 6 4 3 8 8 C 1.46899 * 111.00014 * 182.39205 * 7 6 4 9 9 C 1.52997 * 109.47254 * 169.99684 * 8 7 6 10 10 H 1.09008 * 109.47017 * 54.99767 * 9 8 7 11 11 C 1.47205 * 109.47256 * 295.00102 * 9 8 7 12 12 N 7.64902 * 153.12913 * 48.63636 * 2 1 3 13 13 C 1.52994 * 109.47404 * 174.99689 * 9 8 7 14 14 C 1.50701 * 109.47248 * 184.99754 * 13 9 8 15 15 H 1.07997 * 120.00120 * 0.02562 * 14 13 9 16 16 C 1.37881 * 119.99825 * 179.97438 * 14 13 9 17 17 N 1.31511 * 119.99974 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 120.00091 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47323 * 89.99961 * 18 16 14 20 20 H 1.48504 * 109.46935 * 209.99740 * 18 16 14 21 21 H 1.48493 * 109.47102 * 329.99583 * 18 16 14 22 22 C 1.47013 * 110.75620 * 58.61258 * 7 6 4 23 23 C 1.53099 * 109.25643 * 301.38586 * 22 7 6 24 24 H 1.09003 * 109.54264 * 176.80054 * 23 22 7 25 25 C 1.52999 * 109.50681 * 296.91143 * 23 22 7 26 26 O 1.43014 * 109.25885 * 56.84790 * 23 22 7 27 27 H 1.09001 * 109.47096 * 299.99504 * 1 2 3 28 28 H 1.08993 * 109.47650 * 59.99957 * 1 2 3 29 29 H 1.09005 * 109.46616 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46942 * 60.00086 * 3 2 1 31 31 H 1.08999 * 109.46899 * 300.00371 * 3 2 1 32 32 H 1.08999 * 109.50736 * 63.23743 * 6 4 3 33 33 H 1.09004 * 109.53644 * 303.12902 * 6 4 3 34 34 H 1.09002 * 109.47043 * 289.99755 * 8 7 6 35 35 H 1.09001 * 109.47354 * 49.99816 * 8 7 6 36 36 H 1.09001 * 109.47698 * 305.00111 * 13 9 8 37 37 H 1.09009 * 109.47010 * 65.00116 * 13 9 8 38 38 H 0.97003 * 120.00629 * 180.02562 * 17 16 14 39 39 H 1.08995 * 109.50757 * 61.32024 * 22 7 6 40 40 H 1.09000 * 109.50677 * 181.45449 * 22 7 6 41 41 H 1.09001 * 109.46856 * 179.78101 * 25 23 22 42 42 H 1.08992 * 109.47476 * 299.78362 * 25 23 22 43 43 H 1.08999 * 109.47338 * 59.78524 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5354 1.1849 -0.0006 5 1 3.8520 0.5672 0.8398 6 6 4.1585 2.5776 0.1252 7 7 5.6221 2.4628 0.0475 8 6 6.2628 3.7732 0.2211 9 6 7.7724 3.5852 0.3840 10 1 8.1616 3.0198 -0.4628 11 6 8.0438 2.8509 1.6306 12 7 8.2522 2.2847 2.5947 13 6 8.4538 4.9539 0.4397 14 6 9.9490 4.7696 0.4766 15 1 10.3712 3.7757 0.4613 16 6 10.7782 5.8700 0.5287 17 7 12.0831 5.7092 0.5604 18 14 10.0481 7.5893 0.5544 19 1 9.8161 8.0076 1.9603 20 1 10.9896 8.5366 -0.0949 21 1 8.7585 7.5904 -0.1817 22 6 6.0293 1.8411 -1.2210 23 6 5.3874 0.4557 -1.3332 24 1 5.6402 0.0138 -2.2970 25 6 5.9074 -0.4410 -0.2078 26 8 3.9672 0.5836 -1.2244 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.6885 1.8464 0.8900 31 1 1.6884 1.8465 -0.8899 32 1 3.8781 3.0166 1.0826 33 1 3.7996 3.2121 -0.6853 34 1 6.0661 4.3926 -0.6540 35 1 5.8595 4.2602 1.1090 36 1 8.1806 5.5321 -0.4430 37 1 8.1309 5.4843 1.3357 38 1 12.6665 6.4833 0.5974 39 1 5.7003 2.4632 -2.0533 40 1 7.1145 1.7425 -1.2460 41 1 5.4471 -1.4259 -0.2860 42 1 6.9898 -0.5381 -0.2913 43 1 5.6556 0.0022 0.7556 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252059276.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:30 Heat of formation + Delta-G solvation = -63.845795 kcal Electronic energy + Delta-G solvation = -22755.062366 eV Core-core repulsion = 19414.626595 eV Total energy + Delta-G solvation = -3340.435771 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.19959 -37.99348 -37.09078 -35.19063 -33.56647 -32.97597 -31.87188 -29.96871 -27.77626 -27.18419 -26.04264 -24.46863 -23.04613 -21.87689 -21.46234 -19.58309 -17.14730 -17.02240 -16.70001 -16.61555 -16.40198 -15.56488 -15.29686 -14.92632 -14.75593 -14.35715 -14.25257 -13.72704 -13.44519 -13.15457 -12.78751 -12.55594 -12.51205 -12.22226 -12.06677 -11.85636 -11.77244 -11.74092 -11.39657 -11.30722 -11.27371 -11.20303 -10.76064 -10.41581 -10.25989 -10.03095 -9.94824 -9.87604 -9.55292 -9.34008 -8.64498 -8.36777 -6.13261 -4.14186 3.24386 3.30796 3.31516 3.32725 3.57543 3.66282 3.73976 3.91338 4.35486 4.70896 4.74152 4.81406 4.84408 4.90672 4.99747 5.04469 5.08748 5.14083 5.21434 5.25031 5.27113 5.35340 5.38563 5.44549 5.50608 5.63286 5.69017 5.80109 5.85619 5.91191 6.02121 6.14577 6.25377 6.37088 6.84416 6.89695 6.93194 6.93887 7.07361 7.16431 7.60352 8.37646 8.51815 8.90172 9.46361 10.99801 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028997 B = 0.003623 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.376092 B = 7726.654408 C = 8066.875925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.071 3.929 4 C 0.093 3.907 5 H 0.078 0.922 6 C 0.028 3.972 7 N -0.534 5.534 8 C 0.060 3.940 9 C 0.021 3.979 10 H 0.105 0.895 11 C 0.252 3.748 12 N -0.469 5.469 13 C -0.005 4.005 14 C -0.528 4.528 15 H 0.074 0.926 16 C 0.071 3.929 17 N -0.896 5.896 18 Si 0.878 3.122 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.263 1.263 22 C 0.017 3.983 23 C 0.091 3.909 24 H 0.105 0.895 25 C -0.175 4.175 26 O -0.370 6.370 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.085 0.915 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.086 0.914 33 H 0.045 0.955 34 H 0.056 0.944 35 H 0.082 0.918 36 H 0.036 0.964 37 H 0.021 0.979 38 H 0.265 0.735 39 H 0.046 0.954 40 H 0.095 0.905 41 H 0.056 0.944 42 H 0.065 0.935 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.884 -6.901 -5.123 23.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C -0.006 4.006 4 C 0.035 3.965 5 H 0.096 0.904 6 C -0.100 4.100 7 N -0.259 5.259 8 C -0.068 4.068 9 C -0.001 4.001 10 H 0.123 0.877 11 C -0.065 4.065 12 N -0.146 5.146 13 C -0.044 4.044 14 C -0.566 4.566 15 H 0.092 0.908 16 C -0.131 4.131 17 N -0.534 5.534 18 Si 0.705 3.295 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.188 1.188 22 C -0.111 4.111 23 C 0.033 3.967 24 H 0.123 0.877 25 C -0.233 4.233 26 O -0.289 6.289 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.104 0.896 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.104 0.896 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.100 0.900 36 H 0.055 0.945 37 H 0.039 0.961 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.113 0.887 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -21.252 -8.196 -3.422 23.033 hybrid contribution -0.445 2.110 -0.773 2.290 sum -21.697 -6.086 -4.195 22.921 Atomic orbital electron populations 1.22742 0.81161 1.02780 0.99845 1.87953 1.19438 1.27272 1.95366 1.22491 0.91955 0.85353 1.00846 1.22059 0.91926 0.93341 0.89202 0.90394 1.22630 0.88610 0.96584 1.02219 1.62164 1.06100 1.23471 1.34169 1.22293 0.93643 0.88918 1.01983 1.18979 0.93682 0.97911 0.89521 0.87690 1.28731 0.91455 0.92183 0.94168 1.81064 1.10127 1.11286 1.12117 1.19645 0.97035 0.89903 0.97800 1.21010 0.88383 0.95250 1.51946 0.90769 1.24991 0.94688 0.99159 0.94253 1.69901 1.02795 1.30715 1.50012 0.86817 0.79460 0.84554 0.78694 1.20231 1.21252 1.18781 1.22923 1.02069 0.95731 0.90395 1.22277 0.80355 0.94223 0.99806 0.87688 1.22270 1.01613 0.99328 1.00041 1.88064 1.21734 1.81360 1.37718 0.94178 0.94087 0.89623 0.91774 0.92521 0.89554 0.93664 0.92616 0.89997 0.94548 0.96084 0.92532 0.93533 0.88678 0.92514 0.91587 0.91051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.38 -4.28 10.67 -39.68 -0.42 -4.70 16 3 C 0.07 0.68 5.61 37.16 0.21 0.89 16 4 C 0.09 1.05 2.68 -26.68 -0.07 0.98 16 5 H 0.08 0.98 6.49 -51.93 -0.34 0.64 16 6 C 0.03 0.30 4.93 -3.71 -0.02 0.28 16 7 N -0.53 -6.73 3.79 -234.31 -0.89 -7.61 16 8 C 0.06 0.81 4.32 -3.83 -0.02 0.79 16 9 C 0.02 0.36 2.14 -93.41 -0.20 0.16 16 10 H 0.11 1.73 6.30 -51.92 -0.33 1.40 16 11 C 0.25 5.09 13.67 -20.71 -0.28 4.81 16 12 N -0.47 -10.47 18.55 42.21 0.78 -9.69 16 13 C 0.00 -0.10 3.49 -27.89 -0.10 -0.20 16 14 C -0.53 -14.03 9.15 -34.44 -0.32 -14.35 16 15 H 0.07 2.17 7.84 -52.49 -0.41 1.76 16 16 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 17 N -0.90 -26.85 13.96 55.43 0.77 -26.08 16 18 Si 0.88 20.41 27.47 -169.99 -4.67 15.74 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.26 -5.64 6.54 56.52 0.37 -5.27 16 22 C 0.02 0.20 4.86 -3.71 -0.02 0.18 16 23 C 0.09 1.05 3.92 -26.68 -0.10 0.94 16 24 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 25 C -0.18 -2.11 8.88 37.16 0.33 -1.78 16 26 O -0.37 -4.71 10.25 -39.68 -0.41 -5.12 16 27 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.09 0.83 8.09 -51.93 -0.42 0.41 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.67 8.12 -51.93 -0.42 0.25 16 35 H 0.08 1.06 8.04 -51.93 -0.42 0.65 16 36 H 0.04 0.72 7.20 -51.93 -0.37 0.35 16 37 H 0.02 0.44 7.57 -51.92 -0.39 0.05 16 38 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.10 1.14 6.29 -51.93 -0.33 0.82 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.07 0.97 6.13 -51.93 -0.32 0.65 16 LS Contribution 347.37 15.07 5.23 5.23 Total: -1.00 -32.21 347.37 -6.31 -38.51 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -7.14 Total: -2.24 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 0.43 Total: -4.06 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: 0.67 Total: -43.38 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: -0.83 Total: -9.82 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.67 Total: 15.74 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.21 -6.31 -38.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252059276.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.331 kcal (2) G-P(sol) polarization free energy of solvation -32.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds