Wall clock time and date at job start Tue Mar 31 2020 05:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99979 * 2 1 4 4 C 1.53000 * 109.47149 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.50364 * 305.08543 * 4 3 2 6 6 C 1.53100 * 109.50684 * 184.99827 * 4 3 2 7 7 N 1.47015 * 109.25618 * 183.21758 * 6 4 3 8 8 C 1.46904 * 110.99890 * 182.39671 * 7 6 4 9 9 C 1.52998 * 109.46904 * 169.99978 * 8 7 6 10 10 H 1.09000 * 109.47200 * 54.99640 * 9 8 7 11 11 C 1.47200 * 109.47156 * 294.99085 * 9 8 7 12 12 N 7.64942 * 153.15156 * 48.61914 * 2 1 3 13 13 C 1.53004 * 109.46755 * 174.99562 * 9 8 7 14 14 C 1.50697 * 109.46978 * 184.99955 * 13 9 8 15 15 H 1.08000 * 120.00241 * 359.97438 * 14 13 9 16 16 C 1.37876 * 119.99885 * 180.02562 * 14 13 9 17 17 N 1.31514 * 120.00128 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 119.99922 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47197 * 90.00123 * 18 16 14 20 20 H 1.48503 * 109.46733 * 210.00002 * 18 16 14 21 21 H 1.48497 * 109.47222 * 329.99569 * 18 16 14 22 22 C 1.47012 * 110.75687 * 58.61542 * 7 6 4 23 23 C 1.53100 * 109.25379 * 301.38523 * 22 7 6 24 24 H 1.08994 * 109.51010 * 296.90865 * 23 22 7 25 25 C 1.53007 * 109.50304 * 176.77943 * 23 22 7 26 26 O 1.43014 * 109.50666 * 65.21527 * 4 3 2 27 27 H 1.09002 * 109.47382 * 300.00227 * 1 2 3 28 28 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46926 * 60.00334 * 1 2 3 30 30 H 1.09000 * 109.47170 * 299.99544 * 3 2 1 31 31 H 1.09004 * 109.47235 * 59.99983 * 3 2 1 32 32 H 1.08990 * 109.50503 * 303.14940 * 6 4 3 33 33 H 1.08998 * 109.50351 * 63.28137 * 6 4 3 34 34 H 1.08999 * 109.46454 * 289.99741 * 8 7 6 35 35 H 1.08997 * 109.47399 * 49.99337 * 8 7 6 36 36 H 1.08995 * 109.47388 * 305.00019 * 13 9 8 37 37 H 1.09003 * 109.46939 * 65.00149 * 13 9 8 38 38 H 0.97003 * 120.00078 * 179.97438 * 17 16 14 39 39 H 1.09000 * 109.50348 * 61.31324 * 22 7 6 40 40 H 1.08991 * 109.50772 * 181.45072 * 22 7 6 41 41 H 1.08998 * 109.46957 * 60.00149 * 25 23 22 42 42 H 1.09002 * 109.46897 * 179.97438 * 25 23 22 43 43 H 1.08993 * 109.47027 * 300.00166 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8513 0.5673 0.8417 6 6 4.1586 2.5774 0.1264 7 7 5.6222 2.4626 0.0489 8 6 6.2629 3.7731 0.2225 9 6 7.7725 3.5850 0.3856 10 1 8.1618 3.0196 -0.4611 11 6 8.0437 2.8509 1.6323 12 7 8.2539 2.2838 2.5922 13 6 8.4539 4.9538 0.4413 14 6 9.9491 4.7695 0.4783 15 1 10.3712 3.7755 0.4639 16 6 10.7782 5.8698 0.5315 17 7 12.0831 5.7090 0.5642 18 14 10.0481 7.5890 0.5585 19 1 9.8158 8.0062 1.9647 20 1 10.9896 8.5369 -0.0899 21 1 8.7585 7.5908 -0.1778 22 6 6.0296 1.8408 -1.2194 23 6 5.3877 0.4554 -1.3316 24 1 5.7580 -0.1833 -0.5298 25 6 5.7428 -0.1641 -2.6848 26 8 3.9674 0.5834 -1.2230 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8901 30 1 1.6887 1.8463 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 3.7998 3.2112 -0.6845 33 1 3.8780 3.0165 1.0838 34 1 6.0664 4.3924 -0.6527 35 1 5.8594 4.2601 1.1102 36 1 8.1808 5.5319 -0.4414 37 1 8.1309 5.4842 1.3372 38 1 12.6664 6.4832 0.6013 39 1 5.7006 2.4628 -2.0519 40 1 7.1147 1.7423 -1.2444 41 1 6.8255 -0.2577 -2.7686 42 1 5.2859 -1.1505 -2.7639 43 1 5.3703 0.4746 -3.4857 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252059277.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:32 Heat of formation + Delta-G solvation = -66.356409 kcal Electronic energy + Delta-G solvation = -22544.860179 eV Core-core repulsion = 19204.315540 eV Total energy + Delta-G solvation = -3340.544639 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.04330 -38.00088 -37.09019 -35.23298 -33.60929 -33.34564 -31.86684 -29.97989 -27.80978 -27.13694 -26.05738 -24.51314 -22.19143 -21.94397 -21.45917 -20.47775 -17.17787 -16.93562 -16.77115 -16.63676 -16.24292 -15.74543 -15.21126 -15.10725 -14.67641 -14.59662 -13.96971 -13.57239 -13.35173 -13.09798 -12.85184 -12.61356 -12.50690 -12.36536 -12.15850 -12.00628 -11.85055 -11.71690 -11.42887 -11.37621 -11.28937 -11.08933 -10.77462 -10.59037 -10.26325 -10.03488 -9.95845 -9.88287 -9.54641 -9.33978 -8.64414 -8.40505 -6.13173 -4.14110 3.24478 3.29823 3.31604 3.32720 3.50064 3.67452 3.74784 3.89038 4.35573 4.69300 4.74533 4.78375 4.84577 4.89171 4.97431 5.06291 5.08331 5.12406 5.20937 5.21569 5.29364 5.34732 5.38334 5.42849 5.46880 5.60304 5.65740 5.72196 5.81127 5.84526 5.98479 6.08130 6.14197 6.25851 6.83696 6.89266 6.91634 6.93418 7.07246 7.17388 7.60413 8.37777 8.51664 8.90258 9.46443 10.99890 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025742 B = 0.003572 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.456384 B = 7837.721739 C = 8140.776186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.071 3.929 4 C 0.097 3.903 5 H 0.075 0.925 6 C 0.028 3.972 7 N -0.538 5.538 8 C 0.060 3.940 9 C 0.020 3.980 10 H 0.106 0.894 11 C 0.252 3.748 12 N -0.469 5.469 13 C -0.005 4.005 14 C -0.528 4.528 15 H 0.074 0.926 16 C 0.071 3.929 17 N -0.896 5.896 18 Si 0.878 3.122 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.263 1.263 22 C 0.017 3.983 23 C 0.089 3.911 24 H 0.067 0.933 25 C -0.143 4.143 26 O -0.372 6.372 27 H 0.040 0.960 28 H 0.085 0.915 29 H 0.041 0.959 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.046 0.954 33 H 0.087 0.913 34 H 0.056 0.944 35 H 0.082 0.918 36 H 0.037 0.963 37 H 0.021 0.979 38 H 0.265 0.735 39 H 0.047 0.953 40 H 0.095 0.905 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.906 -6.885 -6.046 23.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C -0.006 4.006 4 C 0.039 3.961 5 H 0.093 0.907 6 C -0.101 4.101 7 N -0.263 5.263 8 C -0.068 4.068 9 C -0.002 4.002 10 H 0.123 0.877 11 C -0.065 4.065 12 N -0.145 5.145 13 C -0.044 4.044 14 C -0.566 4.566 15 H 0.092 0.908 16 C -0.131 4.131 17 N -0.534 5.534 18 Si 0.705 3.295 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.188 1.188 22 C -0.110 4.110 23 C 0.032 3.968 24 H 0.085 0.915 25 C -0.200 4.200 26 O -0.292 6.292 27 H 0.058 0.942 28 H 0.104 0.896 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.105 0.895 34 H 0.074 0.926 35 H 0.100 0.900 36 H 0.055 0.945 37 H 0.039 0.961 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.113 0.887 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -21.268 -8.176 -4.351 23.198 hybrid contribution -0.494 2.129 -0.729 2.303 sum -21.762 -6.048 -5.080 23.151 Atomic orbital electron populations 1.22744 0.81128 1.02792 0.99855 1.87951 1.19469 1.27271 1.95368 1.22484 0.91845 0.85370 1.00892 1.22034 0.92052 0.93394 0.88627 0.90746 1.22634 0.88584 0.96588 1.02253 1.62173 1.06170 1.23654 1.34288 1.22291 0.93661 0.88846 1.01995 1.18987 0.93672 0.97972 0.89542 0.87675 1.28611 0.91511 0.92216 0.94186 1.80941 1.10062 1.11245 1.12302 1.19644 0.97037 0.89876 0.97814 1.21010 0.88381 0.95261 1.51948 0.90762 1.24990 0.94690 0.99159 0.94249 1.69904 1.02795 1.30709 1.50011 0.86817 0.79463 0.84548 0.78701 1.20224 1.21244 1.18779 1.22954 1.02019 0.95742 0.90331 1.22165 0.80785 0.95214 0.98677 0.91532 1.21733 1.01825 1.01223 0.95258 1.88008 1.21805 1.81453 1.37891 0.94161 0.89612 0.94081 0.92465 0.91715 0.93622 0.89474 0.92598 0.89965 0.94534 0.96066 0.92531 0.93482 0.88718 0.90657 0.91696 0.91911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.35 16 2 O -0.38 -4.31 10.67 -39.73 -0.42 -4.73 16 3 C 0.07 0.69 5.60 37.16 0.21 0.90 16 4 C 0.10 1.12 3.09 -26.68 -0.08 1.04 16 5 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 6 C 0.03 0.31 4.93 -3.71 -0.02 0.29 16 7 N -0.54 -7.02 4.43 -234.31 -1.04 -8.05 16 8 C 0.06 0.83 4.32 -3.82 -0.02 0.81 16 9 C 0.02 0.35 2.14 -93.41 -0.20 0.15 16 10 H 0.11 1.75 6.30 -51.93 -0.33 1.43 16 11 C 0.25 5.16 13.66 -20.81 -0.28 4.88 16 12 N -0.47 -10.60 18.53 42.10 0.78 -9.82 16 13 C 0.00 -0.10 3.49 -27.88 -0.10 -0.20 16 14 C -0.53 -14.08 9.15 -34.44 -0.32 -14.39 16 15 H 0.07 2.18 7.84 -52.49 -0.41 1.77 16 16 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 17 N -0.90 -26.87 13.96 55.43 0.77 -26.10 16 18 Si 0.88 20.43 27.47 -169.99 -4.67 15.77 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.26 -5.64 6.54 56.52 0.37 -5.27 16 22 C 0.02 0.21 4.73 -3.71 -0.02 0.19 16 23 C 0.09 1.07 3.43 -26.68 -0.09 0.98 16 24 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 25 C -0.14 -1.40 9.57 37.16 0.36 -1.04 16 26 O -0.37 -4.84 10.08 -39.73 -0.40 -5.24 16 27 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 28 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.09 0.86 8.09 -51.93 -0.42 0.44 16 34 H 0.06 0.69 8.12 -51.93 -0.42 0.26 16 35 H 0.08 1.08 8.04 -51.93 -0.42 0.67 16 36 H 0.04 0.72 7.20 -51.93 -0.37 0.35 16 37 H 0.02 0.45 7.57 -51.93 -0.39 0.05 16 38 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.09 1.17 6.29 -51.93 -0.33 0.84 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 351.93 15.07 5.30 5.30 Total: -1.00 -32.50 351.93 -6.55 -39.05 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -7.33 Total: -3.02 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: 0.46 Total: -3.16 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: 0.52 Total: -43.97 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: -0.82 Total: -9.97 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.67 Total: 15.77 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.50 -6.55 -39.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252059277.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.310 kcal (2) G-P(sol) polarization free energy of solvation -32.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds