Wall clock time and date at job start Tue Mar 31 2020 05:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 113.99620 * 2 1 4 4 C 1.52999 * 109.47182 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.50595 * 305.00411 * 4 3 2 6 6 C 1.53093 * 109.54568 * 184.89416 * 4 3 2 7 7 N 1.47012 * 109.26142 * 183.19407 * 6 4 3 8 8 C 1.46904 * 111.00514 * 182.38896 * 7 6 4 9 9 C 1.53008 * 109.46650 * 72.45190 * 8 7 6 10 10 H 1.08997 * 109.46894 * 305.07385 * 9 8 7 11 11 C 1.47197 * 109.46950 * 65.07621 * 9 8 7 12 12 N 7.33666 * 146.11464 * 51.04144 * 2 1 3 13 13 C 1.52995 * 109.46915 * 185.07815 * 9 8 7 14 14 C 1.50699 * 109.47168 * 175.00344 * 13 9 8 15 15 H 1.08002 * 119.99817 * 359.97438 * 14 13 9 16 16 C 1.37871 * 120.00104 * 180.02562 * 14 13 9 17 17 N 1.31517 * 120.00504 * 359.97438 * 16 14 13 18 18 Si 1.86808 * 120.00114 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.46909 * 59.99647 * 18 16 14 20 20 H 1.48499 * 109.47212 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46778 * 299.99732 * 18 16 14 22 22 C 1.47016 * 110.75196 * 58.61542 * 7 6 4 23 23 C 1.53093 * 109.25923 * 301.38554 * 22 7 6 24 24 H 1.08998 * 109.54475 * 176.80280 * 23 22 7 25 25 C 1.53002 * 109.50792 * 296.91293 * 23 22 7 26 26 O 1.43020 * 109.50528 * 65.08644 * 4 3 2 27 27 H 1.09000 * 109.47119 * 299.98937 * 1 2 3 28 28 H 1.09000 * 109.47842 * 59.99490 * 1 2 3 29 29 H 1.09003 * 109.47022 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47049 * 60.00608 * 3 2 1 31 31 H 1.08997 * 109.47669 * 300.00535 * 3 2 1 32 32 H 1.09004 * 109.50933 * 303.12824 * 6 4 3 33 33 H 1.09002 * 109.50875 * 63.26283 * 6 4 3 34 34 H 1.08998 * 109.47469 * 192.45048 * 8 7 6 35 35 H 1.08999 * 109.46954 * 312.45664 * 8 7 6 36 36 H 1.09005 * 109.47023 * 294.99998 * 13 9 8 37 37 H 1.08998 * 109.47474 * 54.99965 * 13 9 8 38 38 H 0.96998 * 120.00740 * 180.02562 * 17 16 14 39 39 H 1.09000 * 109.51104 * 181.44554 * 22 7 6 40 40 H 1.09010 * 109.50624 * 61.31758 * 22 7 6 41 41 H 1.08998 * 109.47202 * 179.78285 * 25 23 22 42 42 H 1.08997 * 109.46599 * 299.78479 * 25 23 22 43 43 H 1.09004 * 109.46795 * 59.78142 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 -0.0006 5 1 3.8520 0.5684 0.8407 6 6 4.1594 2.5774 0.1224 7 7 5.6228 2.4616 0.0442 8 6 6.2646 3.7720 0.2151 9 6 6.1529 4.2075 1.6777 10 1 5.1065 4.1918 1.9825 11 6 6.9249 3.2840 2.5249 12 7 7.5195 2.5719 3.1807 13 6 6.7075 5.6251 1.8313 14 6 6.4861 6.1008 3.2440 15 1 5.9983 5.4565 3.9605 16 6 6.9055 7.3587 3.6216 17 7 7.4991 8.1435 2.7490 18 14 6.6305 7.9486 5.3726 19 1 7.3285 7.0393 6.3166 20 1 7.1689 9.3245 5.5218 21 1 5.1759 7.9506 5.6715 22 6 6.0290 1.8375 -1.2234 23 6 5.3863 0.4524 -1.3330 24 1 5.6382 0.0086 -2.2962 25 6 5.9063 -0.4428 -0.2064 26 8 3.9661 0.5812 -1.2236 27 1 -0.3633 0.5137 0.8901 28 1 -0.3635 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6885 1.8463 0.8900 31 1 1.6884 1.8465 -0.8899 32 1 3.8004 3.2102 -0.6893 33 1 3.8798 3.0182 1.0793 34 1 7.3159 3.7008 -0.0635 35 1 5.7688 4.5051 -0.4211 36 1 7.7752 5.6234 1.6116 37 1 6.1952 6.2928 1.1387 38 1 7.7945 9.0284 3.0147 39 1 7.1142 1.7383 -1.2491 40 1 5.6998 2.4585 -2.0567 41 1 5.4454 -1.4276 -0.2828 42 1 6.9886 -0.5406 -0.2904 43 1 5.6553 0.0023 0.7564 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252059278.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:34 Heat of formation + Delta-G solvation = -68.921169 kcal Electronic energy + Delta-G solvation = -22783.477364 eV Core-core repulsion = 19442.821508 eV Total energy + Delta-G solvation = -3340.655856 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.13845 -37.87460 -37.01526 -35.15363 -33.56138 -32.93485 -31.72802 -29.85966 -27.44459 -27.14915 -25.68386 -24.64311 -22.80064 -22.00624 -21.68434 -19.51690 -17.06968 -16.84169 -16.71795 -16.33388 -16.22273 -15.46141 -15.21957 -14.88240 -14.65471 -14.52143 -14.08499 -13.85321 -13.46481 -12.84723 -12.74285 -12.50092 -12.34135 -12.01841 -11.97802 -11.80881 -11.75527 -11.54917 -11.27002 -11.20277 -11.16908 -11.06496 -10.69433 -10.61164 -10.38128 -10.17651 -9.85733 -9.69663 -9.49561 -9.23043 -8.48000 -8.29755 -6.12044 -4.15522 3.29226 3.33797 3.37083 3.41084 3.61579 3.70877 3.81923 3.97934 4.39157 4.76919 4.81724 4.89619 4.89737 5.00722 5.06118 5.10545 5.15584 5.24990 5.26083 5.31533 5.34528 5.40899 5.46389 5.52733 5.58461 5.67427 5.76441 5.84779 5.91360 5.96994 6.00940 6.29729 6.36194 6.44902 6.93734 7.00145 7.03290 7.19637 7.38824 7.49296 7.82758 8.20200 8.56731 8.88967 9.50173 10.98787 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019058 B = 0.003985 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.846958 B = 7024.241709 C = 7726.008106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.070 3.930 4 C 0.093 3.907 5 H 0.078 0.922 6 C 0.023 3.977 7 N -0.535 5.535 8 C 0.063 3.937 9 C 0.012 3.988 10 H 0.099 0.901 11 C 0.256 3.744 12 N -0.479 5.479 13 C 0.032 3.968 14 C -0.527 4.527 15 H 0.056 0.944 16 C 0.063 3.937 17 N -0.892 5.892 18 Si 0.891 3.109 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.275 1.275 22 C 0.023 3.977 23 C 0.091 3.909 24 H 0.103 0.897 25 C -0.175 4.175 26 O -0.370 6.370 27 H 0.041 0.959 28 H 0.040 0.960 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.047 0.953 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.057 0.943 36 H 0.026 0.974 37 H 0.037 0.963 38 H 0.263 0.737 39 H 0.086 0.914 40 H 0.043 0.957 41 H 0.056 0.944 42 H 0.062 0.938 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.653 -12.471 -10.600 19.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C -0.007 4.007 4 C 0.035 3.965 5 H 0.096 0.904 6 C -0.105 4.105 7 N -0.260 5.260 8 C -0.066 4.066 9 C -0.010 4.010 10 H 0.116 0.884 11 C -0.061 4.061 12 N -0.156 5.156 13 C -0.007 4.007 14 C -0.565 4.565 15 H 0.074 0.926 16 C -0.139 4.139 17 N -0.530 5.530 18 Si 0.719 3.281 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.201 1.201 22 C -0.105 4.105 23 C 0.033 3.967 24 H 0.120 0.880 25 C -0.232 4.232 26 O -0.289 6.289 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.103 0.897 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.112 0.888 34 H 0.100 0.900 35 H 0.075 0.925 36 H 0.044 0.956 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.104 0.896 40 H 0.062 0.938 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.530 -13.901 -9.394 19.295 hybrid contribution -0.567 1.654 0.295 1.773 sum -10.097 -12.246 -9.099 18.295 Atomic orbital electron populations 1.22737 0.81176 1.02685 0.99930 1.87935 1.19439 1.27377 1.95395 1.22505 0.91849 0.85290 1.01089 1.22085 0.92050 0.93439 0.88912 0.90428 1.22736 0.88478 0.96384 1.02912 1.62179 1.06501 1.23702 1.33614 1.22277 0.99998 0.88186 0.96118 1.19215 0.98386 0.94199 0.89206 0.88368 1.28837 0.92878 0.91723 0.92672 1.80993 1.10881 1.12878 1.10802 1.19166 0.97109 0.86251 0.98150 1.21092 1.39427 1.00129 0.95887 0.92558 1.24944 0.94832 0.96715 0.97382 1.69923 1.39534 1.09232 1.34354 0.86657 0.78662 0.77831 0.84959 1.20193 1.21174 1.20052 1.22799 1.01178 0.95748 0.90758 1.22247 0.80706 0.94149 0.99570 0.87951 1.22269 1.01274 0.99411 1.00269 1.88063 1.21446 1.81323 1.38080 0.94071 0.94112 0.89715 0.91475 0.92474 0.93442 0.88844 0.90039 0.92478 0.95568 0.94490 0.92714 0.89577 0.93833 0.92512 0.91873 0.90885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.38 -4.60 10.67 -39.86 -0.43 -5.02 16 3 C 0.07 0.75 5.61 37.16 0.21 0.96 16 4 C 0.09 1.13 2.68 -26.68 -0.07 1.06 16 5 H 0.08 1.04 6.49 -51.93 -0.34 0.70 16 6 C 0.02 0.28 4.75 -3.72 -0.02 0.26 16 7 N -0.54 -7.05 3.75 -234.30 -0.88 -7.93 16 8 C 0.06 0.90 4.34 -3.82 -0.02 0.88 16 9 C 0.01 0.21 2.23 -93.41 -0.21 0.01 16 10 H 0.10 1.65 6.57 -51.93 -0.34 1.31 16 11 C 0.26 5.26 13.67 -20.76 -0.28 4.97 16 12 N -0.48 -10.73 18.54 42.16 0.78 -9.95 16 13 C 0.03 0.72 4.42 -27.89 -0.12 0.60 16 14 C -0.53 -13.84 8.60 -34.44 -0.30 -14.14 16 15 H 0.06 1.47 7.59 -52.49 -0.40 1.07 16 16 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 17 N -0.89 -25.27 13.29 55.43 0.74 -24.54 16 18 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 22 C 0.02 0.27 5.03 -3.71 -0.02 0.25 16 23 C 0.09 1.03 3.92 -26.68 -0.10 0.93 16 24 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 25 C -0.17 -2.05 8.88 37.16 0.33 -1.72 16 26 O -0.37 -4.84 10.25 -39.86 -0.41 -5.25 16 27 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.09 1.10 6.56 -51.93 -0.34 0.76 16 34 H 0.08 1.18 7.92 -51.93 -0.41 0.76 16 35 H 0.06 0.76 8.05 -51.93 -0.42 0.34 16 36 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16 39 H 0.09 0.94 8.04 -51.93 -0.42 0.52 16 40 H 0.04 0.48 8.14 -51.92 -0.42 0.06 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.07 1.00 6.13 -51.93 -0.32 0.68 16 LS Contribution 351.33 15.07 5.29 5.29 Total: -1.00 -30.97 351.33 -6.70 -37.67 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -7.19 Total: -3.41 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: 0.41 Total: -2.94 kcal Atomic # 7 Polarization: -43.06 SS G_CDS: 0.64 Total: -42.42 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: -0.83 Total: -10.27 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.97 -6.70 -37.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252059278.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.255 kcal (2) G-P(sol) polarization free energy of solvation -30.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds