Wall clock time and date at job start Tue Mar 31 2020 05:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00084 * 2 1 4 4 C 1.52993 * 109.47192 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.54295 * 304.88814 * 4 3 2 6 6 C 1.53102 * 109.50801 * 184.78346 * 4 3 2 7 7 N 1.47015 * 109.25849 * 183.21830 * 6 4 3 8 8 C 1.46903 * 110.99950 * 182.39176 * 7 6 4 9 9 C 1.53001 * 109.47167 * 52.52108 * 8 7 6 10 10 H 1.08997 * 109.47291 * 302.43550 * 9 8 7 11 11 C 1.47199 * 109.47010 * 62.43465 * 9 8 7 12 12 N 6.79025 * 137.00332 * 50.03355 * 2 1 3 13 13 C 1.52996 * 109.47080 * 182.43325 * 9 8 7 14 14 C 1.50708 * 109.47202 * 175.00302 * 13 9 8 15 15 H 1.08006 * 119.99554 * 0.02562 * 14 13 9 16 16 C 1.37874 * 120.00237 * 180.02562 * 14 13 9 17 17 N 1.31514 * 119.99569 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 119.99925 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47384 * 89.99806 * 18 16 14 20 20 H 1.48507 * 109.47065 * 210.00009 * 18 16 14 21 21 H 1.48498 * 109.47276 * 329.99899 * 18 16 14 22 22 C 1.47013 * 110.75659 * 58.61625 * 7 6 4 23 23 C 1.53099 * 109.25357 * 301.38606 * 22 7 6 24 24 H 1.09005 * 109.50782 * 296.90542 * 23 22 7 25 25 C 1.53001 * 109.50537 * 176.78286 * 23 22 7 26 26 O 1.43008 * 109.26455 * 56.84777 * 23 22 7 27 27 H 1.09001 * 109.46956 * 299.99731 * 1 2 3 28 28 H 1.09001 * 109.47192 * 59.99762 * 1 2 3 29 29 H 1.09006 * 109.46963 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47090 * 60.00080 * 3 2 1 31 31 H 1.09007 * 109.47184 * 300.00095 * 3 2 1 32 32 H 1.08999 * 109.50884 * 63.28128 * 6 4 3 33 33 H 1.09002 * 109.50358 * 303.15233 * 6 4 3 34 34 H 1.08991 * 109.47113 * 172.52273 * 8 7 6 35 35 H 1.09003 * 109.47152 * 292.52789 * 8 7 6 36 36 H 1.09000 * 109.47182 * 294.99843 * 13 9 8 37 37 H 1.09002 * 109.47431 * 55.00169 * 13 9 8 38 38 H 0.97007 * 119.99339 * 179.97438 * 17 16 14 39 39 H 1.08995 * 109.50916 * 61.31536 * 22 7 6 40 40 H 1.08994 * 109.51000 * 181.44979 * 22 7 6 41 41 H 1.09010 * 109.47158 * 59.99774 * 25 23 22 42 42 H 1.09000 * 109.47540 * 179.97438 * 25 23 22 43 43 H 1.08996 * 109.47163 * 299.99658 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.8528 0.5700 0.8417 6 6 4.1587 2.5778 0.1197 7 7 5.6222 2.4628 0.0410 8 6 6.2632 3.7738 0.2094 9 6 5.7444 4.4347 1.4880 10 1 4.6594 4.5253 1.4358 11 6 6.1125 3.6102 2.6506 12 7 6.3954 2.9744 3.5490 13 6 6.3659 5.8253 1.6317 14 6 5.7633 6.5243 2.8231 15 1 5.0123 6.0262 3.4185 16 6 6.1705 7.7996 3.1530 17 7 7.0853 8.4058 2.4283 18 14 5.4230 8.6661 4.6293 19 1 6.2271 8.3636 5.8405 20 1 5.4174 10.1321 4.3923 21 1 4.0300 8.1917 4.8288 22 6 6.0282 1.8367 -1.2257 23 6 5.3862 0.4510 -1.3325 24 1 5.7574 -0.1852 -0.5290 25 6 5.7397 -0.1731 -2.6840 26 8 3.9661 0.5792 -1.2227 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8793 3.0203 1.0759 33 1 3.7989 3.2089 -0.6930 34 1 7.3430 3.6439 0.2799 35 1 6.0283 4.4058 -0.6472 36 1 7.4425 5.7293 1.7731 37 1 6.1682 6.4066 0.7311 38 1 7.3715 9.3032 2.6602 39 1 5.6984 2.4559 -2.0599 40 1 7.1134 1.7381 -1.2516 41 1 6.8225 -0.2671 -2.7687 42 1 5.2828 -1.1598 -2.7593 43 1 5.3663 0.4628 -3.4866 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252059279.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:36 Heat of formation + Delta-G solvation = -69.120291 kcal Electronic energy + Delta-G solvation = -22657.477443 eV Core-core repulsion = 19316.812952 eV Total energy + Delta-G solvation = -3340.664490 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.01167 -37.87735 -37.08065 -35.13556 -33.57431 -33.33003 -31.69529 -29.90455 -27.42228 -27.20440 -25.59945 -24.67546 -22.20764 -22.06552 -21.50818 -20.44325 -17.13810 -16.79576 -16.66181 -16.27632 -16.05412 -15.62046 -15.29908 -15.12120 -14.74356 -14.46973 -13.97284 -13.56302 -13.36990 -12.93413 -12.68409 -12.59506 -12.35409 -12.23594 -12.06858 -11.90398 -11.75593 -11.61804 -11.42212 -11.22554 -11.09071 -11.04784 -10.69580 -10.61497 -10.50774 -10.17260 -9.84189 -9.65966 -9.53252 -9.23591 -8.49588 -8.32008 -6.13450 -4.16963 3.27172 3.33950 3.36465 3.41640 3.54555 3.66737 3.76961 3.95339 4.37837 4.73341 4.82184 4.85135 4.93157 5.00711 5.06927 5.10626 5.16413 5.24440 5.24948 5.29571 5.36381 5.40466 5.46595 5.47974 5.51308 5.59113 5.70529 5.81242 5.83961 5.94184 5.97349 6.06178 6.30515 6.41329 6.94020 6.98227 7.02595 7.21494 7.37290 7.47369 7.81278 8.18296 8.52066 8.87464 9.48816 10.97437 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017958 B = 0.004053 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.811238 B = 6906.921333 C = 7847.795380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.070 3.930 4 C 0.098 3.902 5 H 0.074 0.926 6 C 0.019 3.981 7 N -0.539 5.539 8 C 0.063 3.937 9 C 0.005 3.995 10 H 0.100 0.900 11 C 0.252 3.748 12 N -0.474 5.474 13 C 0.032 3.968 14 C -0.528 4.528 15 H 0.057 0.943 16 C 0.063 3.937 17 N -0.891 5.891 18 Si 0.892 3.108 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.273 1.273 22 C 0.024 3.976 23 C 0.089 3.911 24 H 0.065 0.935 25 C -0.142 4.142 26 O -0.372 6.372 27 H 0.041 0.959 28 H 0.041 0.959 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.095 0.905 33 H 0.049 0.951 34 H 0.085 0.915 35 H 0.055 0.945 36 H 0.027 0.973 37 H 0.038 0.962 38 H 0.263 0.737 39 H 0.045 0.955 40 H 0.086 0.914 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.208 -13.574 -11.332 19.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C -0.007 4.007 4 C 0.040 3.960 5 H 0.092 0.908 6 C -0.109 4.109 7 N -0.263 5.263 8 C -0.065 4.065 9 C -0.017 4.017 10 H 0.118 0.882 11 C -0.065 4.065 12 N -0.150 5.150 13 C -0.007 4.007 14 C -0.566 4.566 15 H 0.075 0.925 16 C -0.139 4.139 17 N -0.529 5.529 18 Si 0.719 3.281 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.197 1.197 22 C -0.104 4.104 23 C 0.031 3.969 24 H 0.083 0.917 25 C -0.200 4.200 26 O -0.292 6.292 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.103 0.897 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.113 0.887 33 H 0.068 0.932 34 H 0.103 0.897 35 H 0.073 0.927 36 H 0.045 0.955 37 H 0.056 0.944 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.104 0.896 41 H 0.090 0.910 42 H 0.083 0.917 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.537 -14.895 -9.756 19.335 hybrid contribution -0.717 1.809 0.086 1.948 sum -8.254 -13.087 -9.669 18.245 Atomic orbital electron populations 1.22741 0.81148 1.02678 0.99961 1.87930 1.19470 1.27374 1.95405 1.22501 0.91725 0.85303 1.01176 1.22053 0.92203 0.93428 0.88291 0.90833 1.22785 0.88623 0.96463 1.03053 1.62243 1.06621 1.23680 1.33783 1.22286 0.99899 0.87524 0.96783 1.19337 1.02053 0.95085 0.85204 0.88180 1.28829 0.92491 0.91479 0.93689 1.81011 1.09793 1.12501 1.11742 1.19172 0.96671 0.86370 0.98449 1.21122 1.23250 0.99990 1.12199 0.92523 1.24945 0.94902 0.97393 0.96650 1.69939 1.29996 1.14007 1.39003 0.86591 0.79754 0.78723 0.83006 1.20596 1.21073 1.19750 1.22823 1.01171 0.95794 0.90662 1.22136 0.81220 0.95101 0.98427 0.91659 1.21723 1.01459 1.01295 0.95475 1.88003 1.21467 1.81332 1.38368 0.94066 0.94079 0.89708 0.91430 0.92357 0.88698 0.93250 0.89688 0.92677 0.95457 0.94418 0.92753 0.93704 0.89572 0.90989 0.91681 0.91929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.38 -4.78 10.67 -39.95 -0.43 -5.20 16 3 C 0.07 0.79 5.60 37.15 0.21 1.00 16 4 C 0.10 1.27 3.09 -26.68 -0.08 1.18 16 5 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 6 C 0.02 0.24 4.43 -3.71 -0.02 0.23 16 7 N -0.54 -7.42 4.46 -234.31 -1.05 -8.46 16 8 C 0.06 0.93 4.52 -3.82 -0.02 0.92 16 9 C 0.01 0.09 1.76 -93.41 -0.16 -0.07 16 10 H 0.10 1.68 6.12 -51.93 -0.32 1.36 16 11 C 0.25 5.19 13.50 -20.75 -0.28 4.91 16 12 N -0.47 -10.63 18.54 42.17 0.78 -9.85 16 13 C 0.03 0.73 4.42 -27.88 -0.12 0.60 16 14 C -0.53 -13.83 8.60 -34.44 -0.30 -14.13 16 15 H 0.06 1.48 7.59 -52.48 -0.40 1.08 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 17 N -0.89 -25.22 13.29 55.43 0.74 -24.49 16 18 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 22 C 0.02 0.28 4.95 -3.71 -0.02 0.26 16 23 C 0.09 1.04 3.43 -26.68 -0.09 0.94 16 24 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 25 C -0.14 -1.28 9.57 37.16 0.36 -0.93 16 26 O -0.37 -5.02 10.08 -39.95 -0.40 -5.42 16 27 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 1.25 5.93 -51.93 -0.31 0.94 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 39 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 354.59 15.07 5.34 5.34 Total: -1.00 -31.08 354.59 -6.89 -37.97 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -7.35 Total: -3.86 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: 0.49 Total: -2.07 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: 0.47 Total: -42.80 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: -0.83 Total: -10.63 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.08 -6.89 -37.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252059279.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.146 kcal (2) G-P(sol) polarization free energy of solvation -31.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds