Wall clock time and date at job start Tue Mar 31 2020 05:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.52115 * 2 1 4 4 C 1.53090 * 109.52155 * 239.80975 * 2 1 3 5 5 O 1.42913 * 109.41426 * 297.70137 * 4 2 1 6 6 C 1.42896 * 114.09768 * 298.84185 * 5 4 2 7 7 C 1.53094 * 109.41568 * 61.15722 * 6 5 4 8 8 C 1.53174 * 109.52493 * 120.12451 * 2 1 3 9 9 H 1.09000 * 109.54795 * 182.88221 * 8 2 1 10 10 C 1.50699 * 109.54477 * 303.05981 * 8 2 1 11 11 O 1.21276 * 120.00562 * 93.16973 * 10 8 2 12 12 N 1.34779 * 119.99812 * 273.17622 * 10 8 2 13 13 C 1.46966 * 120.59381 * 185.06677 * 12 10 8 14 14 C 1.53371 * 108.63480 * 235.24654 * 13 12 10 15 15 N 1.46965 * 108.63563 * 310.57549 * 14 13 12 16 16 C 1.36935 * 120.59496 * 235.19984 * 15 14 13 17 17 H 1.08004 * 119.99850 * 27.37204 * 16 15 14 18 18 C 1.38803 * 120.00285 * 207.64230 * 16 15 14 19 19 N 1.31630 * 120.00039 * 16.18805 * 18 16 15 20 20 Si 1.86798 * 120.00579 * 196.18436 * 18 16 15 21 21 H 1.48505 * 109.46655 * 59.99914 * 20 18 16 22 22 H 1.48499 * 109.47517 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47249 * 300.00568 * 20 18 16 24 24 C 1.46961 * 118.81139 * 55.47942 * 15 14 13 25 25 C 1.46965 * 120.59554 * 5.09222 * 12 10 8 26 26 H 1.09002 * 109.47047 * 301.21831 * 1 2 3 27 27 H 1.09000 * 109.47558 * 61.22499 * 1 2 3 28 28 H 1.09006 * 109.47261 * 181.22800 * 1 2 3 29 29 H 1.09001 * 109.47893 * 57.68094 * 4 2 1 30 30 H 1.08998 * 109.48026 * 177.71988 * 4 2 1 31 31 H 1.08993 * 109.48091 * 181.14389 * 6 5 4 32 32 H 1.09005 * 109.48063 * 301.17664 * 6 5 4 33 33 H 1.08997 * 109.52294 * 182.48868 * 7 6 5 34 34 H 1.09003 * 109.52304 * 62.29715 * 7 6 5 35 35 H 1.08998 * 109.61016 * 115.50311 * 13 12 10 36 36 H 1.09003 * 109.75349 * 355.07645 * 13 12 10 37 37 H 1.09008 * 109.61024 * 190.82985 * 14 13 12 38 38 H 1.08997 * 109.60775 * 70.32694 * 14 13 12 39 39 H 0.96994 * 120.00153 * 180.02562 * 19 18 16 40 40 H 1.09005 * 109.60958 * 64.26138 * 24 15 14 41 41 H 1.08994 * 109.61175 * 184.77253 * 24 15 14 42 42 H 1.09004 * 109.60466 * 244.49782 * 25 12 10 43 43 H 1.09000 * 109.60769 * 4.82976 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0416 -0.7256 -1.2472 5 8 1.6097 -2.0875 -1.2150 6 6 2.0970 -2.8278 -0.0941 7 6 1.5877 -2.1866 1.1995 8 6 2.0419 -0.7245 1.2487 9 1 3.1307 -0.6803 1.2753 10 6 1.4803 -0.0635 2.4810 11 8 0.4542 -0.4778 2.9772 12 7 2.1182 0.9884 3.0315 13 6 1.6448 1.5731 4.2941 14 6 1.3957 3.0708 4.0775 15 7 2.5769 3.6540 3.4259 16 6 3.2245 4.7233 3.9848 17 1 3.1904 4.8769 5.0533 18 6 3.9200 5.6128 3.1775 19 7 3.7061 5.6285 1.8788 20 14 5.1596 6.7877 3.9340 21 1 6.2268 6.0107 4.6142 22 1 5.7622 7.6263 2.8668 23 1 4.4758 7.6597 4.9226 24 6 3.0469 3.0728 2.1605 25 6 3.2994 1.5716 2.3799 26 1 -0.3633 0.5327 0.8789 27 1 -0.3634 0.4947 -0.9007 28 1 -0.3634 -1.0275 0.0220 29 1 1.6452 -0.2396 -2.1387 30 1 3.1308 -0.6900 -1.2673 31 1 1.7408 -3.8561 -0.1549 32 1 3.1870 -2.8197 -0.0991 33 1 1.9942 -2.7233 2.0566 34 1 0.4988 -2.2308 1.2237 35 1 2.4011 1.4360 5.0669 36 1 0.7175 1.0884 4.5996 37 1 1.2309 3.5571 5.0391 38 1 0.5216 3.2080 3.4410 39 1 4.1923 6.2499 1.3147 40 1 2.2877 3.2101 1.3905 41 1 3.9729 3.5604 1.8557 42 1 4.1734 1.4343 3.0165 43 1 3.4659 1.0832 1.4198 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310679548.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:35 Heat of formation + Delta-G solvation = -59.235233 kcal Electronic energy + Delta-G solvation = -23989.595221 eV Core-core repulsion = 20649.359379 eV Total energy + Delta-G solvation = -3340.235842 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.58256 -38.70337 -36.79525 -34.33702 -33.83667 -31.85799 -31.36124 -30.17158 -27.56205 -26.78381 -25.60604 -23.60153 -23.24041 -22.64809 -20.80276 -19.44558 -18.29320 -17.23342 -16.46084 -16.16685 -15.98128 -15.39665 -15.23713 -14.85099 -14.68332 -14.09889 -13.73750 -13.41872 -13.38575 -13.33486 -13.05155 -12.85064 -12.23907 -11.89220 -11.83561 -11.58113 -11.37998 -11.27892 -11.20049 -10.85463 -10.78529 -10.57553 -10.51427 -10.32636 -10.24189 -10.02586 -9.89610 -9.76153 -9.12618 -8.63268 -8.24863 -6.76182 -5.89304 -3.33832 2.95623 3.32158 3.38033 3.38145 3.42890 3.81370 4.40619 4.62063 4.65592 4.71593 4.90605 5.06358 5.13980 5.26180 5.31230 5.35233 5.46173 5.54873 5.59290 5.66472 5.70154 5.78607 5.83827 5.86033 5.92874 6.07201 6.10877 6.16193 6.19835 6.23528 6.31881 6.41021 6.49061 6.75529 6.91147 7.11346 7.18107 7.43757 7.67173 7.91556 8.31572 8.56832 9.08212 9.70456 10.26889 11.18123 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026646 B = 0.004731 C = 0.004348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.558284 B = 5917.357186 C = 6437.819801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.118 4.118 3 H 0.089 0.911 4 C 0.068 3.932 5 O -0.380 6.380 6 C 0.062 3.938 7 C -0.139 4.139 8 C -0.104 4.104 9 H 0.090 0.910 10 C 0.519 3.481 11 O -0.556 6.556 12 N -0.596 5.596 13 C 0.095 3.905 14 C 0.132 3.868 15 N -0.591 5.591 16 C -0.254 4.254 17 H 0.068 0.932 18 C 0.003 3.997 19 N -0.905 5.905 20 Si 0.906 3.094 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.282 1.282 24 C 0.158 3.842 25 C 0.078 3.922 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.097 0.903 30 H 0.052 0.948 31 H 0.094 0.906 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.061 0.939 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.023 0.977 39 H 0.256 0.744 40 H 0.023 0.977 41 H 0.104 0.896 42 H 0.062 0.938 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.689 -13.375 -4.269 14.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.137 4.137 3 H 0.108 0.892 4 C -0.009 4.009 5 O -0.299 6.299 6 C -0.015 4.015 7 C -0.177 4.177 8 C -0.126 4.126 9 H 0.108 0.892 10 C 0.306 3.694 11 O -0.435 6.435 12 N -0.328 5.328 13 C -0.029 4.029 14 C 0.005 3.995 15 N -0.314 5.314 16 C -0.384 4.384 17 H 0.085 0.915 18 C -0.196 4.196 19 N -0.549 5.549 20 Si 0.735 3.265 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.208 1.208 24 C 0.031 3.969 25 C -0.047 4.047 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.115 0.885 30 H 0.071 0.929 31 H 0.112 0.888 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.106 0.894 35 H 0.079 0.921 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.041 0.959 39 H 0.066 0.934 40 H 0.041 0.959 41 H 0.122 0.878 42 H 0.080 0.920 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.261 -13.515 -4.250 14.224 hybrid contribution 0.983 0.959 0.619 1.506 sum -0.278 -12.556 -3.631 13.074 Atomic orbital electron populations 1.21774 0.93669 1.02569 1.01817 1.21732 0.98065 1.00254 0.93623 0.89232 1.22627 0.98369 0.82115 0.97740 1.87916 1.74223 1.22548 1.45215 1.22583 0.97874 0.95556 0.85448 1.22081 1.03630 0.93758 0.98182 1.21371 1.01208 0.96167 0.93810 0.89215 1.20374 0.84092 0.79982 0.84906 1.90620 1.23928 1.64858 1.64100 1.48079 1.29972 1.30544 1.24227 1.22178 0.99667 0.96272 0.84783 1.21292 0.90325 0.90500 0.97418 1.44000 1.28537 1.34442 1.24407 1.19196 1.26551 1.01350 0.91289 0.91451 1.25050 1.01409 0.97382 0.95744 1.69978 1.42555 1.38776 1.03634 0.86317 0.81448 0.80539 0.78152 1.20968 1.21556 1.20825 1.21311 1.01183 0.86682 0.87714 1.22820 0.86817 0.98620 0.96406 0.92254 0.92741 0.91819 0.88453 0.92950 0.88788 0.93271 0.90927 0.89436 0.92076 0.90067 0.91605 0.95894 0.93404 0.95927 0.87776 0.91959 0.91061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 8.37 37.16 0.31 -1.66 16 2 C -0.12 -1.52 2.59 -90.48 -0.23 -1.76 16 3 H 0.09 1.24 7.29 -51.93 -0.38 0.86 16 4 C 0.07 0.75 6.25 37.20 0.23 0.99 16 5 O -0.38 -4.58 10.21 -35.23 -0.36 -4.94 16 6 C 0.06 0.64 6.84 37.21 0.25 0.89 16 7 C -0.14 -1.68 4.67 -26.59 -0.12 -1.80 16 8 C -0.10 -1.40 1.52 -91.59 -0.14 -1.54 16 9 H 0.09 1.10 6.62 -51.93 -0.34 0.76 16 10 C 0.52 8.87 5.74 -10.98 -0.06 8.81 16 11 O -0.56 -10.92 14.76 5.56 0.08 -10.84 16 12 N -0.60 -10.69 2.95 -172.21 -0.51 -11.19 16 13 C 0.10 1.76 6.59 -3.60 -0.02 1.73 16 14 C 0.13 2.75 6.67 -3.60 -0.02 2.73 16 15 N -0.59 -14.22 2.97 -171.77 -0.51 -14.73 16 16 C -0.25 -6.69 9.59 -15.06 -0.14 -6.83 16 17 H 0.07 1.74 7.88 -52.48 -0.41 1.32 16 18 C 0.00 0.07 4.95 -17.43 -0.09 -0.02 16 19 N -0.90 -25.00 11.05 55.49 0.61 -24.39 16 20 Si 0.91 20.85 29.58 -169.99 -5.03 15.82 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 C 0.16 3.50 5.54 -3.37 -0.02 3.48 16 25 C 0.08 1.36 6.23 -3.37 -0.02 1.34 16 26 H 0.06 0.98 6.80 -51.93 -0.35 0.62 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.89 6.11 -51.93 -0.32 0.58 16 29 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.09 1.21 6.21 -51.93 -0.32 0.89 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.08 1.47 7.00 -51.93 -0.36 1.11 16 37 H 0.07 1.31 7.93 -51.92 -0.41 0.90 16 38 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.10 2.55 5.87 -51.93 -0.30 2.25 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 43 H 0.07 1.05 4.87 -51.93 -0.25 0.80 16 LS Contribution 324.73 15.07 4.89 4.89 Total: -1.00 -29.87 324.73 -7.72 -37.59 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -6.83 Total: 1.44 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: -0.08 Total: 6.35 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: -0.40 Total: -50.31 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: -0.28 Total: -15.78 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.03 Total: 15.82 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.87 -7.72 -37.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310679548.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.641 kcal (2) G-P(sol) polarization free energy of solvation -29.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds