Wall clock time and date at job start Tue Mar 31 2020 05:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.52115 * 2 1 4 4 C 1.53090 * 109.52155 * 239.80975 * 2 1 3 5 5 O 1.42913 * 109.41426 * 297.70137 * 4 2 1 6 6 C 1.42896 * 114.09768 * 298.84185 * 5 4 2 7 7 C 1.53094 * 109.41568 * 61.15722 * 6 5 4 8 8 C 1.53174 * 109.52493 * 120.12451 * 2 1 3 9 9 H 1.09000 * 109.54795 * 182.88221 * 8 2 1 10 10 C 1.50699 * 109.54477 * 303.05981 * 8 2 1 11 11 O 1.21276 * 120.00562 * 93.16973 * 10 8 2 12 12 N 1.34779 * 119.99812 * 273.17622 * 10 8 2 13 13 C 1.46966 * 120.59381 * 185.06677 * 12 10 8 14 14 C 1.53371 * 108.63480 * 235.24654 * 13 12 10 15 15 N 1.46965 * 108.63563 * 310.57549 * 14 13 12 16 16 C 1.36935 * 120.59496 * 235.19984 * 15 14 13 17 17 H 1.08004 * 119.99850 * 27.37204 * 16 15 14 18 18 C 1.38803 * 120.00285 * 207.64230 * 16 15 14 19 19 N 1.31630 * 120.00039 * 16.18805 * 18 16 15 20 20 Si 1.86798 * 120.00579 * 196.18436 * 18 16 15 21 21 H 1.48505 * 109.46655 * 59.99914 * 20 18 16 22 22 H 1.48499 * 109.47517 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47249 * 300.00568 * 20 18 16 24 24 C 1.46961 * 118.81139 * 55.47942 * 15 14 13 25 25 C 1.46965 * 120.59554 * 5.09222 * 12 10 8 26 26 H 1.09002 * 109.47047 * 301.21831 * 1 2 3 27 27 H 1.09000 * 109.47558 * 61.22499 * 1 2 3 28 28 H 1.09006 * 109.47261 * 181.22800 * 1 2 3 29 29 H 1.09001 * 109.47893 * 57.68094 * 4 2 1 30 30 H 1.08998 * 109.48026 * 177.71988 * 4 2 1 31 31 H 1.08993 * 109.48091 * 181.14389 * 6 5 4 32 32 H 1.09005 * 109.48063 * 301.17664 * 6 5 4 33 33 H 1.08997 * 109.52294 * 182.48868 * 7 6 5 34 34 H 1.09003 * 109.52304 * 62.29715 * 7 6 5 35 35 H 1.08998 * 109.61016 * 115.50311 * 13 12 10 36 36 H 1.09003 * 109.75349 * 355.07645 * 13 12 10 37 37 H 1.09008 * 109.61024 * 190.82985 * 14 13 12 38 38 H 1.08997 * 109.60775 * 70.32694 * 14 13 12 39 39 H 0.96994 * 120.00153 * 180.02562 * 19 18 16 40 40 H 1.09005 * 109.60958 * 64.26138 * 24 15 14 41 41 H 1.08994 * 109.61175 * 184.77253 * 24 15 14 42 42 H 1.09004 * 109.60466 * 244.49782 * 25 12 10 43 43 H 1.09000 * 109.60769 * 4.82976 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0416 -0.7256 -1.2472 5 8 1.6097 -2.0875 -1.2150 6 6 2.0970 -2.8278 -0.0941 7 6 1.5877 -2.1866 1.1995 8 6 2.0419 -0.7245 1.2487 9 1 3.1307 -0.6803 1.2753 10 6 1.4803 -0.0635 2.4810 11 8 0.4542 -0.4778 2.9772 12 7 2.1182 0.9884 3.0315 13 6 1.6448 1.5731 4.2941 14 6 1.3957 3.0708 4.0775 15 7 2.5769 3.6540 3.4259 16 6 3.2245 4.7233 3.9848 17 1 3.1904 4.8769 5.0533 18 6 3.9200 5.6128 3.1775 19 7 3.7061 5.6285 1.8788 20 14 5.1596 6.7877 3.9340 21 1 6.2268 6.0107 4.6142 22 1 5.7622 7.6263 2.8668 23 1 4.4758 7.6597 4.9226 24 6 3.0469 3.0728 2.1605 25 6 3.2994 1.5716 2.3799 26 1 -0.3633 0.5327 0.8789 27 1 -0.3634 0.4947 -0.9007 28 1 -0.3634 -1.0275 0.0220 29 1 1.6452 -0.2396 -2.1387 30 1 3.1308 -0.6900 -1.2673 31 1 1.7408 -3.8561 -0.1549 32 1 3.1870 -2.8197 -0.0991 33 1 1.9942 -2.7233 2.0566 34 1 0.4988 -2.2308 1.2237 35 1 2.4011 1.4360 5.0669 36 1 0.7175 1.0884 4.5996 37 1 1.2309 3.5571 5.0391 38 1 0.5216 3.2080 3.4410 39 1 4.1923 6.2499 1.3147 40 1 2.2877 3.2101 1.3905 41 1 3.9729 3.5604 1.8557 42 1 4.1734 1.4343 3.0165 43 1 3.4659 1.0832 1.4198 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310679548.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:35 Heat of formation + Delta-G solvation = -77.757047 kcal Electronic energy + Delta-G solvation = -23990.398387 eV Core-core repulsion = 20649.359379 eV Total energy + Delta-G solvation = -3341.039008 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.79406 -39.88192 -38.39156 -35.66322 -35.31478 -33.20110 -32.76810 -31.84004 -29.06135 -28.03916 -26.79539 -25.30066 -24.50350 -23.93396 -22.34014 -20.75641 -19.67442 -18.70905 -17.83023 -17.54596 -16.92502 -16.84724 -16.51264 -16.36284 -15.81924 -15.53455 -15.39948 -15.06070 -15.01020 -14.55931 -14.36561 -14.00818 -13.57403 -13.34957 -13.18297 -12.99163 -12.67343 -12.58498 -12.52009 -12.38437 -12.26361 -12.20813 -12.02458 -11.86623 -11.70246 -11.54020 -11.27665 -10.83664 -10.59905 -10.29819 -9.82093 -8.67419 -7.88834 -5.37275 1.49672 1.51035 1.58084 1.60307 2.03653 2.51189 2.99239 3.25712 3.43677 3.57194 3.65596 3.68715 3.94901 4.07006 4.20844 4.22828 4.29020 4.32429 4.43955 4.51533 4.52841 4.61225 4.64852 4.71336 4.72014 4.77937 4.78897 4.82393 4.91281 5.03230 5.08029 5.14093 5.17120 5.23471 5.39495 5.53644 5.59898 5.66611 6.29372 6.34730 6.50002 7.10360 7.17859 7.77476 8.30606 9.15849 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026646 B = 0.004731 C = 0.004348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.558284 B = 5917.357186 C = 6437.819801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.116 4.116 3 H 0.080 0.920 4 C 0.072 3.928 5 O -0.394 6.394 6 C 0.064 3.936 7 C -0.134 4.134 8 C -0.101 4.101 9 H 0.111 0.889 10 C 0.517 3.483 11 O -0.583 6.583 12 N -0.603 5.603 13 C 0.105 3.895 14 C 0.133 3.867 15 N -0.608 5.608 16 C -0.267 4.267 17 H 0.069 0.931 18 C -0.044 4.044 19 N -0.933 5.933 20 Si 0.969 3.031 21 H -0.276 1.276 22 H -0.293 1.293 23 H -0.280 1.280 24 C 0.164 3.836 25 C 0.094 3.906 26 H 0.026 0.974 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.108 0.892 30 H 0.073 0.927 31 H 0.111 0.889 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.005 0.995 39 H 0.253 0.747 40 H -0.002 1.002 41 H 0.081 0.919 42 H 0.069 0.931 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.771 -14.807 -4.619 15.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.135 4.135 3 H 0.098 0.902 4 C -0.005 4.005 5 O -0.313 6.313 6 C -0.013 4.013 7 C -0.172 4.172 8 C -0.122 4.122 9 H 0.129 0.871 10 C 0.306 3.694 11 O -0.464 6.464 12 N -0.335 5.335 13 C -0.020 4.020 14 C 0.006 3.994 15 N -0.331 5.331 16 C -0.397 4.397 17 H 0.086 0.914 18 C -0.240 4.240 19 N -0.579 5.579 20 Si 0.797 3.203 21 H -0.201 1.201 22 H -0.219 1.219 23 H -0.206 1.206 24 C 0.038 3.962 25 C -0.029 4.029 26 H 0.045 0.955 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.126 0.874 30 H 0.091 0.909 31 H 0.129 0.871 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.023 0.977 39 H 0.062 0.938 40 H 0.016 0.984 41 H 0.099 0.901 42 H 0.087 0.913 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.193 -14.973 -4.593 15.663 hybrid contribution 0.418 1.414 0.749 1.654 sum 0.611 -13.559 -3.843 14.107 Atomic orbital electron populations 1.21706 0.94850 1.02002 1.00743 1.21738 0.97043 1.00081 0.94674 0.90203 1.22674 0.99534 0.81587 0.96699 1.87913 1.74742 1.22843 1.45770 1.22713 0.99068 0.95874 0.83622 1.22062 1.02327 0.92948 0.99896 1.21454 1.02208 0.96710 0.91828 0.87079 1.21059 0.83440 0.79405 0.85447 1.90606 1.25147 1.65596 1.65063 1.48170 1.30213 1.30963 1.24112 1.21978 1.00162 0.94215 0.85605 1.21335 0.88768 0.92304 0.96987 1.44266 1.29465 1.34495 1.24920 1.19504 1.26636 1.01997 0.91566 0.91379 1.25754 1.03051 0.99033 0.96127 1.70129 1.43450 1.39577 1.04730 0.85321 0.79278 0.78526 0.77146 1.20147 1.21939 1.20584 1.21144 0.99065 0.89556 0.86485 1.22593 0.86724 0.95401 0.98228 0.95529 0.91651 0.91977 0.87432 0.90901 0.87071 0.91179 0.90218 0.91632 0.91087 0.89871 0.91058 0.97702 0.93806 0.98355 0.90113 0.91255 0.87780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.76 8.37 71.98 0.60 -3.16 16 2 C -0.12 -2.82 2.59 -10.71 -0.03 -2.85 16 3 H 0.08 2.11 7.29 -2.39 -0.02 2.09 16 4 C 0.07 1.37 6.25 72.01 0.45 1.82 16 5 O -0.39 -8.30 10.21 -148.98 -1.52 -9.82 16 6 C 0.06 1.09 6.84 72.01 0.49 1.58 16 7 C -0.13 -2.96 4.67 30.69 0.14 -2.82 16 8 C -0.10 -2.51 1.52 -11.42 -0.02 -2.52 16 9 H 0.11 2.31 6.62 -2.39 -0.02 2.29 16 10 C 0.52 17.18 5.74 87.66 0.50 17.69 16 11 O -0.58 -22.84 14.76 -3.02 -0.04 -22.89 16 12 N -0.60 -21.04 2.95 -817.16 -2.41 -23.44 16 13 C 0.10 3.82 6.59 86.41 0.57 4.39 16 14 C 0.13 5.61 6.67 86.42 0.58 6.19 16 15 N -0.61 -29.54 2.97 -697.36 -2.07 -31.61 16 16 C -0.27 -14.10 9.59 84.03 0.81 -13.30 16 17 H 0.07 3.51 7.88 -2.91 -0.02 3.48 16 18 C -0.04 -2.34 4.95 84.86 0.42 -1.92 16 19 N -0.93 -52.30 11.05 21.65 0.24 -52.06 16 20 Si 0.97 42.82 29.58 68.60 2.03 44.85 16 21 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 22 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 23 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 24 C 0.16 7.33 5.54 86.56 0.48 7.81 16 25 C 0.09 3.18 6.23 86.56 0.54 3.72 16 26 H 0.03 0.88 6.80 -2.39 -0.02 0.87 16 27 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.06 1.72 6.11 -2.38 -0.01 1.71 16 29 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 33 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.06 1.75 6.21 -2.39 -0.01 1.73 16 35 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.08 3.01 7.00 -2.39 -0.02 2.99 16 37 H 0.07 2.87 7.93 -2.38 -0.02 2.86 16 38 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 39 H 0.25 13.74 8.31 -92.71 -0.77 12.97 16 40 H 0.00 -0.08 8.14 -2.38 -0.02 -0.10 16 41 H 0.08 4.01 5.87 -2.39 -0.01 4.00 16 42 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 43 H 0.10 2.81 4.87 -2.39 -0.01 2.80 16 Total: -1.00 -64.73 324.73 2.76 -61.97 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: 0.99 Total: 16.38 kcal Atomic # 6 Polarization: 11.08 SS G_CDS: 5.54 Total: 16.62 kcal Atomic # 7 Polarization: -102.87 SS G_CDS: -4.24 Total: -107.11 kcal Atomic # 8 Polarization: -31.15 SS G_CDS: -1.57 Total: -32.71 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -64.73 2.76 -61.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310679548.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.783 kcal (2) G-P(sol) polarization free energy of solvation -64.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds