Wall clock time and date at job start Tue Mar 31 2020 05:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.52738 * 2 1 4 4 C 1.53091 * 109.52557 * 120.12508 * 2 1 3 5 5 O 1.42905 * 109.41303 * 62.35549 * 4 2 1 6 6 C 1.42904 * 114.09406 * 61.16229 * 5 4 2 7 7 C 1.53087 * 109.41439 * 298.83780 * 6 5 4 8 8 C 1.53178 * 109.57472 * 239.84335 * 2 1 3 9 9 H 1.09002 * 109.54632 * 177.17804 * 8 2 1 10 10 C 1.50697 * 109.54532 * 56.90682 * 8 2 1 11 11 O 1.21281 * 120.00704 * 261.48544 * 10 8 2 12 12 N 1.34778 * 119.99721 * 81.47866 * 10 8 2 13 13 C 1.46967 * 120.59681 * 4.70031 * 12 10 8 14 14 C 1.53811 * 108.39951 * 124.75770 * 13 12 10 15 15 N 1.46965 * 108.57919 * 49.64048 * 14 13 12 16 16 C 1.36938 * 120.59278 * 124.62634 * 15 14 13 17 17 H 1.07995 * 119.99496 * 208.30775 * 16 15 14 18 18 C 1.38809 * 119.99922 * 28.30625 * 16 15 14 19 19 N 1.31618 * 120.00252 * 17.46300 * 18 16 15 20 20 Si 1.86795 * 119.99698 * 197.46157 * 18 16 15 21 21 H 1.48496 * 109.47149 * 60.00380 * 20 18 16 22 22 H 1.48501 * 109.47282 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47255 * 299.99821 * 20 18 16 24 24 C 1.46967 * 118.81023 * 304.64371 * 15 14 13 25 25 C 1.46965 * 120.59404 * 184.98098 * 12 10 8 26 26 H 1.09003 * 109.46927 * 298.11344 * 1 2 3 27 27 H 1.09001 * 109.47596 * 58.11017 * 1 2 3 28 28 H 1.08995 * 109.47403 * 178.11236 * 1 2 3 29 29 H 1.08998 * 109.48672 * 182.34010 * 4 2 1 30 30 H 1.09000 * 109.47863 * 302.36878 * 4 2 1 31 31 H 1.09004 * 109.48323 * 58.82482 * 6 5 4 32 32 H 1.09000 * 109.47860 * 178.85678 * 6 5 4 33 33 H 1.09002 * 109.52102 * 177.51506 * 7 6 5 34 34 H 1.08994 * 109.52480 * 297.70496 * 7 6 5 35 35 H 1.09003 * 109.61307 * 244.54302 * 13 12 10 36 36 H 1.09007 * 109.60363 * 5.04912 * 13 12 10 37 37 H 1.09000 * 109.73966 * 289.84811 * 14 13 12 38 38 H 1.08995 * 109.67464 * 169.38940 * 14 13 12 39 39 H 0.97001 * 120.00375 * 179.97438 * 19 18 16 40 40 H 1.08995 * 109.61583 * 295.48648 * 24 15 14 41 41 H 1.08995 * 109.60592 * 174.96948 * 24 15 14 42 42 H 1.09002 * 109.61099 * 354.94844 * 25 12 10 43 43 H 1.09000 * 109.61375 * 115.45905 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0416 -0.7242 1.2480 5 8 1.6110 -2.0864 1.2167 6 6 2.0994 -2.8271 0.0965 7 6 1.5901 -2.1875 -1.1977 8 6 2.0431 -0.7250 -1.2479 9 1 3.1320 -0.6813 -1.2732 10 6 1.4815 -0.0654 -2.4810 11 8 0.5114 -0.5391 -3.0337 12 7 2.0571 1.0510 -2.9695 13 6 3.2923 1.5783 -2.3726 14 6 4.3495 1.7107 -3.4819 15 7 3.7500 2.4260 -4.6172 16 6 4.3345 3.5609 -5.1130 17 1 3.7278 4.3164 -5.5899 18 6 5.7065 3.7400 -5.0025 19 7 6.4862 2.7108 -4.7473 20 14 6.4463 5.4419 -5.2159 21 1 5.8813 6.3590 -4.1937 22 1 7.9202 5.3651 -5.0520 23 1 6.1257 5.9545 -6.5722 24 6 2.5118 1.9018 -5.2105 25 6 1.4577 1.7663 -4.1048 26 1 -0.3633 0.4843 0.9065 27 1 -0.3634 0.5429 -0.8725 28 1 -0.3634 -1.0270 -0.0338 29 1 3.1308 -0.6876 1.2686 30 1 1.6446 -0.2377 2.1389 31 1 3.1894 -2.8181 0.1021 32 1 1.7440 -3.8557 0.1580 33 1 1.9975 -2.7246 -2.0543 34 1 0.5014 -2.2326 -1.2224 35 1 3.0970 2.5556 -1.9312 36 1 3.6494 0.8920 -1.6047 37 1 4.6724 0.7203 -3.8028 38 1 5.2061 2.2712 -3.1075 39 1 7.4450 2.8359 -4.6704 40 1 2.7038 0.9251 -5.6545 41 1 2.1530 2.5901 -5.9757 42 1 0.6029 1.2043 -4.4811 43 1 1.1348 2.7567 -3.7839 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310679549.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:38 Heat of formation + Delta-G solvation = -59.226760 kcal Electronic energy + Delta-G solvation = -23852.342487 eV Core-core repulsion = 20512.107012 eV Total energy + Delta-G solvation = -3340.235475 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.59629 -38.73117 -36.79667 -34.39647 -33.82368 -31.88842 -31.36159 -30.19532 -27.56705 -26.87278 -25.62943 -23.60051 -23.26552 -22.64279 -20.88492 -19.36607 -18.36246 -17.28236 -16.48473 -16.17275 -15.93286 -15.51012 -15.34074 -14.80374 -14.68385 -14.00815 -13.81393 -13.57361 -13.34065 -13.27781 -13.09897 -12.89415 -12.24232 -12.00279 -11.87421 -11.62192 -11.43174 -11.32428 -11.23672 -10.85363 -10.79354 -10.62623 -10.53300 -10.33752 -10.25941 -10.02528 -9.89179 -9.78240 -9.14468 -8.63115 -8.25594 -6.75463 -5.90096 -3.34382 2.95768 3.31989 3.37760 3.38092 3.42067 3.77748 4.40489 4.57921 4.60139 4.69601 4.86210 5.01648 5.10913 5.25653 5.31248 5.35653 5.40659 5.49329 5.53029 5.59332 5.70235 5.75412 5.80026 5.85337 5.92788 6.01499 6.04018 6.11237 6.14313 6.18921 6.31802 6.39628 6.40893 6.75403 6.90232 7.07681 7.16598 7.40578 7.67927 7.90877 8.31537 8.56333 9.07690 9.70243 10.27433 11.17771 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.027042 B = 0.004493 C = 0.004226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.163438 B = 6230.077897 C = 6624.342132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.115 4.115 3 H 0.084 0.916 4 C 0.068 3.932 5 O -0.381 6.381 6 C 0.061 3.939 7 C -0.138 4.138 8 C -0.107 4.107 9 H 0.094 0.906 10 C 0.519 3.481 11 O -0.556 6.556 12 N -0.596 5.596 13 C 0.079 3.921 14 C 0.157 3.843 15 N -0.591 5.591 16 C -0.257 4.257 17 H 0.067 0.933 18 C 0.004 3.996 19 N -0.903 5.903 20 Si 0.905 3.095 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.282 1.282 24 C 0.132 3.868 25 C 0.095 3.905 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.053 0.947 30 H 0.096 0.904 31 H 0.051 0.949 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.023 0.977 38 H 0.100 0.900 39 H 0.256 0.744 40 H 0.023 0.977 41 H 0.066 0.934 42 H 0.081 0.919 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.220 -6.589 11.022 14.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.134 4.134 3 H 0.103 0.897 4 C -0.009 4.009 5 O -0.299 6.299 6 C -0.015 4.015 7 C -0.176 4.176 8 C -0.128 4.128 9 H 0.112 0.888 10 C 0.307 3.693 11 O -0.436 6.436 12 N -0.328 5.328 13 C -0.046 4.046 14 C 0.031 3.969 15 N -0.313 5.313 16 C -0.386 4.386 17 H 0.085 0.915 18 C -0.195 4.195 19 N -0.547 5.547 20 Si 0.734 3.266 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.208 1.208 24 C 0.005 3.995 25 C -0.029 4.029 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.114 0.886 31 H 0.069 0.931 32 H 0.113 0.887 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.041 0.959 38 H 0.118 0.882 39 H 0.066 0.934 40 H 0.041 0.959 41 H 0.084 0.916 42 H 0.099 0.901 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.640 -6.891 10.847 14.950 hybrid contribution 0.852 1.110 -0.453 1.471 sum -6.788 -5.781 10.395 13.695 Atomic orbital electron populations 1.21778 0.93810 1.02822 1.01474 1.21687 0.97821 0.99968 0.93948 0.89730 1.22613 0.98477 0.82339 0.97478 1.87911 1.74215 1.22362 1.45445 1.22615 0.98039 0.95556 0.85335 1.22070 1.03460 0.93807 0.98271 1.21399 1.01619 0.96259 0.93529 0.88764 1.20350 0.83480 0.80425 0.85056 1.90623 1.28023 1.63870 1.61054 1.48067 1.26098 1.25749 1.32857 1.22819 0.85691 0.98181 0.97875 1.21260 0.93502 0.96325 0.85852 1.43970 1.25359 1.28805 1.33207 1.19171 0.89779 0.94441 1.35207 0.91507 1.25060 0.96161 0.97351 1.00879 1.70002 1.03746 1.28239 1.52737 0.86337 0.77919 0.84057 0.78270 1.20933 1.21565 1.20796 1.21296 0.87549 0.97438 0.93234 1.22190 0.97197 0.95664 0.87827 0.92769 0.92532 0.91602 0.92875 0.88618 0.93090 0.88699 0.90641 0.89582 0.91834 0.91025 0.95911 0.88182 0.93406 0.95894 0.91576 0.90058 0.92060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 8.44 37.15 0.31 -1.44 16 2 C -0.12 -1.34 2.69 -90.48 -0.24 -1.59 16 3 H 0.08 0.97 7.69 -51.93 -0.40 0.57 16 4 C 0.07 0.69 6.25 37.20 0.23 0.92 16 5 O -0.38 -4.43 10.22 -35.23 -0.36 -4.79 16 6 C 0.06 0.64 6.84 37.20 0.25 0.89 16 7 C -0.14 -1.72 4.60 -26.59 -0.12 -1.84 16 8 C -0.11 -1.43 1.55 -91.59 -0.14 -1.57 16 9 H 0.09 1.21 6.29 -51.93 -0.33 0.88 16 10 C 0.52 8.86 5.62 -10.99 -0.06 8.80 16 11 O -0.56 -10.95 15.08 5.56 0.08 -10.87 16 12 N -0.60 -10.63 2.94 -172.21 -0.51 -11.14 16 13 C 0.08 1.37 6.09 -3.37 -0.02 1.35 16 14 C 0.16 3.51 5.53 -3.37 -0.02 3.49 16 15 N -0.59 -14.26 2.97 -171.77 -0.51 -14.77 16 16 C -0.26 -6.76 9.57 -15.06 -0.14 -6.91 16 17 H 0.07 1.73 7.89 -52.49 -0.41 1.32 16 18 C 0.00 0.11 4.91 -17.43 -0.09 0.03 16 19 N -0.90 -25.11 11.20 55.49 0.62 -24.49 16 20 Si 0.90 20.86 29.59 -169.99 -5.03 15.83 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 C 0.13 2.76 6.67 -3.59 -0.02 2.74 16 25 C 0.10 1.76 6.60 -3.59 -0.02 1.73 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.81 7.03 -51.93 -0.36 0.45 16 28 H 0.07 0.85 6.10 -51.93 -0.32 0.54 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.09 1.19 6.23 -51.93 -0.32 0.86 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.07 1.05 5.34 -51.93 -0.28 0.77 16 37 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.10 2.45 5.98 -51.93 -0.31 2.14 16 39 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 40 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 1.32 7.93 -51.93 -0.41 0.91 16 42 H 0.08 1.48 6.99 -51.93 -0.36 1.11 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 325.90 15.07 4.91 4.91 Total: -1.00 -30.12 325.90 -7.75 -37.87 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -6.87 Total: 0.84 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: -0.09 Total: 6.60 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: -0.39 Total: -50.40 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: -0.28 Total: -15.65 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.03 Total: 15.83 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.12 -7.75 -37.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310679549.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.358 kcal (2) G-P(sol) polarization free energy of solvation -30.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds