Wall clock time and date at job start Tue Mar 31 2020 05:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.52738 * 2 1 4 4 C 1.53091 * 109.52557 * 120.12508 * 2 1 3 5 5 O 1.42905 * 109.41303 * 62.35549 * 4 2 1 6 6 C 1.42904 * 114.09406 * 61.16229 * 5 4 2 7 7 C 1.53087 * 109.41439 * 298.83780 * 6 5 4 8 8 C 1.53178 * 109.57472 * 239.84335 * 2 1 3 9 9 H 1.09002 * 109.54632 * 177.17804 * 8 2 1 10 10 C 1.50697 * 109.54532 * 56.90682 * 8 2 1 11 11 O 1.21281 * 120.00704 * 261.48544 * 10 8 2 12 12 N 1.34778 * 119.99721 * 81.47866 * 10 8 2 13 13 C 1.46967 * 120.59681 * 4.70031 * 12 10 8 14 14 C 1.53811 * 108.39951 * 124.75770 * 13 12 10 15 15 N 1.46965 * 108.57919 * 49.64048 * 14 13 12 16 16 C 1.36938 * 120.59278 * 124.62634 * 15 14 13 17 17 H 1.07995 * 119.99496 * 208.30775 * 16 15 14 18 18 C 1.38809 * 119.99922 * 28.30625 * 16 15 14 19 19 N 1.31618 * 120.00252 * 17.46300 * 18 16 15 20 20 Si 1.86795 * 119.99698 * 197.46157 * 18 16 15 21 21 H 1.48496 * 109.47149 * 60.00380 * 20 18 16 22 22 H 1.48501 * 109.47282 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47255 * 299.99821 * 20 18 16 24 24 C 1.46967 * 118.81023 * 304.64371 * 15 14 13 25 25 C 1.46965 * 120.59404 * 184.98098 * 12 10 8 26 26 H 1.09003 * 109.46927 * 298.11344 * 1 2 3 27 27 H 1.09001 * 109.47596 * 58.11017 * 1 2 3 28 28 H 1.08995 * 109.47403 * 178.11236 * 1 2 3 29 29 H 1.08998 * 109.48672 * 182.34010 * 4 2 1 30 30 H 1.09000 * 109.47863 * 302.36878 * 4 2 1 31 31 H 1.09004 * 109.48323 * 58.82482 * 6 5 4 32 32 H 1.09000 * 109.47860 * 178.85678 * 6 5 4 33 33 H 1.09002 * 109.52102 * 177.51506 * 7 6 5 34 34 H 1.08994 * 109.52480 * 297.70496 * 7 6 5 35 35 H 1.09003 * 109.61307 * 244.54302 * 13 12 10 36 36 H 1.09007 * 109.60363 * 5.04912 * 13 12 10 37 37 H 1.09000 * 109.73966 * 289.84811 * 14 13 12 38 38 H 1.08995 * 109.67464 * 169.38940 * 14 13 12 39 39 H 0.97001 * 120.00375 * 179.97438 * 19 18 16 40 40 H 1.08995 * 109.61583 * 295.48648 * 24 15 14 41 41 H 1.08995 * 109.60592 * 174.96948 * 24 15 14 42 42 H 1.09002 * 109.61099 * 354.94844 * 25 12 10 43 43 H 1.09000 * 109.61375 * 115.45905 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0416 -0.7242 1.2480 5 8 1.6110 -2.0864 1.2167 6 6 2.0994 -2.8271 0.0965 7 6 1.5901 -2.1875 -1.1977 8 6 2.0431 -0.7250 -1.2479 9 1 3.1320 -0.6813 -1.2732 10 6 1.4815 -0.0654 -2.4810 11 8 0.5114 -0.5391 -3.0337 12 7 2.0571 1.0510 -2.9695 13 6 3.2923 1.5783 -2.3726 14 6 4.3495 1.7107 -3.4819 15 7 3.7500 2.4260 -4.6172 16 6 4.3345 3.5609 -5.1130 17 1 3.7278 4.3164 -5.5899 18 6 5.7065 3.7400 -5.0025 19 7 6.4862 2.7108 -4.7473 20 14 6.4463 5.4419 -5.2159 21 1 5.8813 6.3590 -4.1937 22 1 7.9202 5.3651 -5.0520 23 1 6.1257 5.9545 -6.5722 24 6 2.5118 1.9018 -5.2105 25 6 1.4577 1.7663 -4.1048 26 1 -0.3633 0.4843 0.9065 27 1 -0.3634 0.5429 -0.8725 28 1 -0.3634 -1.0270 -0.0338 29 1 3.1308 -0.6876 1.2686 30 1 1.6446 -0.2377 2.1389 31 1 3.1894 -2.8181 0.1021 32 1 1.7440 -3.8557 0.1580 33 1 1.9975 -2.7246 -2.0543 34 1 0.5014 -2.2326 -1.2224 35 1 3.0970 2.5556 -1.9312 36 1 3.6494 0.8920 -1.6047 37 1 4.6724 0.7203 -3.8028 38 1 5.2061 2.2712 -3.1075 39 1 7.4450 2.8359 -4.6704 40 1 2.7038 0.9251 -5.6545 41 1 2.1530 2.5901 -5.9757 42 1 0.6029 1.2043 -4.4811 43 1 1.1348 2.7567 -3.7839 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310679549.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:37 Heat of formation + Delta-G solvation = -77.961167 kcal Electronic energy + Delta-G solvation = -23853.154872 eV Core-core repulsion = 20512.107012 eV Total energy + Delta-G solvation = -3341.047860 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.78403 -39.89131 -38.38995 -35.68008 -35.29609 -33.19159 -32.78625 -31.85640 -29.03801 -28.05642 -26.78811 -25.30305 -24.52719 -23.89578 -22.39789 -20.67515 -19.68719 -18.78665 -17.77569 -17.53745 -16.97698 -16.85527 -16.54291 -16.35640 -15.76086 -15.51615 -15.41318 -15.11540 -14.94708 -14.60103 -14.37666 -13.96986 -13.60838 -13.35198 -13.20761 -12.97486 -12.66445 -12.62262 -12.51320 -12.38680 -12.25560 -12.20477 -12.04590 -11.88470 -11.70522 -11.52510 -11.23569 -10.84260 -10.59854 -10.30831 -9.82836 -8.67252 -7.90169 -5.38382 1.49499 1.50845 1.58009 1.61270 2.02618 2.50858 2.99082 3.24458 3.43831 3.56027 3.63357 3.70091 3.95431 4.04085 4.20758 4.22572 4.30657 4.33109 4.41735 4.50811 4.54623 4.62246 4.65082 4.69565 4.74384 4.78572 4.78980 4.85184 4.90939 5.04135 5.08546 5.13872 5.17040 5.21539 5.40708 5.51993 5.59488 5.64858 6.28593 6.34119 6.49648 7.09557 7.17544 7.76788 8.30654 9.15061 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.027042 B = 0.004493 C = 0.004226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.163438 B = 6230.077897 C = 6624.342132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.112 4.112 3 H 0.092 0.908 4 C 0.068 3.932 5 O -0.393 6.393 6 C 0.065 3.935 7 C -0.135 4.135 8 C -0.104 4.104 9 H 0.105 0.895 10 C 0.517 3.483 11 O -0.585 6.585 12 N -0.602 5.602 13 C 0.096 3.904 14 C 0.162 3.838 15 N -0.608 5.608 16 C -0.269 4.269 17 H 0.068 0.932 18 C -0.043 4.043 19 N -0.933 5.933 20 Si 0.969 3.031 21 H -0.275 1.275 22 H -0.294 1.294 23 H -0.279 1.279 24 C 0.133 3.867 25 C 0.105 3.895 26 H 0.072 0.928 27 H 0.030 0.970 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.114 0.886 31 H 0.066 0.934 32 H 0.110 0.890 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.105 0.895 37 H -0.002 1.002 38 H 0.077 0.923 39 H 0.253 0.747 40 H 0.006 0.994 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.270 -6.257 12.891 16.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.131 4.131 3 H 0.110 0.890 4 C -0.008 4.008 5 O -0.312 6.312 6 C -0.012 4.012 7 C -0.174 4.174 8 C -0.125 4.125 9 H 0.123 0.877 10 C 0.307 3.693 11 O -0.466 6.466 12 N -0.334 5.334 13 C -0.028 4.028 14 C 0.036 3.964 15 N -0.331 5.331 16 C -0.399 4.399 17 H 0.086 0.914 18 C -0.239 4.239 19 N -0.578 5.578 20 Si 0.796 3.204 21 H -0.201 1.201 22 H -0.220 1.220 23 H -0.205 1.205 24 C 0.006 3.994 25 C -0.019 4.019 26 H 0.091 0.909 27 H 0.050 0.950 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.132 0.868 31 H 0.084 0.916 32 H 0.128 0.872 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.123 0.877 37 H 0.016 0.984 38 H 0.095 0.905 39 H 0.062 0.938 40 H 0.024 0.976 41 H 0.090 0.910 42 H 0.101 0.899 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.713 -6.564 12.729 16.267 hybrid contribution 0.815 0.959 -1.110 1.678 sum -6.898 -5.606 11.618 14.628 Atomic orbital electron populations 1.21723 0.94514 1.01989 1.01201 1.21728 0.97166 1.00395 0.93804 0.89005 1.22743 0.99492 0.81557 0.97050 1.87907 1.74638 1.23061 1.45590 1.22670 0.98836 0.95930 0.83720 1.22048 1.02380 0.93357 0.99566 1.21475 1.01972 0.96696 0.92391 0.87694 1.21029 0.82909 0.79650 0.85687 1.90609 1.29402 1.64427 1.62160 1.48151 1.26237 1.26157 1.32815 1.22602 0.84013 0.99660 0.96488 1.21119 0.94364 0.94208 0.86744 1.44236 1.26054 1.28691 1.34132 1.19481 0.90186 0.95204 1.34981 0.91434 1.25769 0.96480 1.00496 1.01106 1.70148 1.03649 1.29994 1.54044 0.85333 0.76672 0.80084 0.78264 1.20075 1.21961 1.20525 1.21343 0.87269 0.96460 0.94319 1.21982 0.96159 0.96352 0.87392 0.90876 0.95050 0.92561 0.91293 0.86788 0.91611 0.87208 0.91181 0.91317 0.91039 0.87679 0.98426 0.90487 0.93803 0.97609 0.91041 0.89892 0.91139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.44 71.98 0.61 -2.56 16 2 C -0.11 -2.32 2.69 -10.71 -0.03 -2.35 16 3 H 0.09 1.80 7.69 -2.39 -0.02 1.78 16 4 C 0.07 1.14 6.25 72.01 0.45 1.59 16 5 O -0.39 -7.97 10.22 -148.98 -1.52 -9.49 16 6 C 0.06 1.18 6.84 72.01 0.49 1.67 16 7 C -0.14 -3.18 4.60 30.68 0.14 -3.04 16 8 C -0.10 -2.60 1.55 -11.42 -0.02 -2.62 16 9 H 0.11 2.40 6.29 -2.39 -0.01 2.39 16 10 C 0.52 17.20 5.62 87.66 0.49 17.69 16 11 O -0.58 -22.98 15.08 -3.03 -0.05 -23.03 16 12 N -0.60 -20.89 2.94 -817.12 -2.40 -23.30 16 13 C 0.10 3.21 6.09 86.56 0.53 3.74 16 14 C 0.16 7.26 5.53 86.56 0.48 7.73 16 15 N -0.61 -29.54 2.97 -697.36 -2.07 -31.60 16 16 C -0.27 -14.19 9.57 84.03 0.80 -13.39 16 17 H 0.07 3.48 7.89 -2.91 -0.02 3.46 16 18 C -0.04 -2.27 4.91 84.86 0.42 -1.85 16 19 N -0.93 -52.55 11.20 21.65 0.24 -52.31 16 20 Si 0.97 42.80 29.59 68.60 2.03 44.83 16 21 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 22 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 23 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 24 C 0.13 5.60 6.67 86.42 0.58 6.18 16 25 C 0.11 3.83 6.60 86.42 0.57 4.40 16 26 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.03 0.87 7.03 -2.39 -0.02 0.85 16 28 H 0.06 1.40 6.10 -2.39 -0.01 1.39 16 29 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.07 1.86 6.23 -2.39 -0.01 1.84 16 35 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.11 2.80 5.34 -2.38 -0.01 2.78 16 37 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 38 H 0.08 3.82 5.98 -2.39 -0.01 3.80 16 39 H 0.25 13.80 8.31 -92.71 -0.77 13.03 16 40 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 41 H 0.07 2.88 7.93 -2.39 -0.02 2.86 16 42 H 0.08 3.00 6.99 -2.39 -0.02 2.98 16 43 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -65.05 325.90 2.73 -62.31 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: 0.99 Total: 15.39 kcal Atomic # 6 Polarization: 11.69 SS G_CDS: 5.51 Total: 17.21 kcal Atomic # 7 Polarization: -102.98 SS G_CDS: -4.23 Total: -107.21 kcal Atomic # 8 Polarization: -30.96 SS G_CDS: -1.57 Total: -32.52 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -65.05 2.73 -62.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310679549.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.649 kcal (2) G-P(sol) polarization free energy of solvation -65.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds