Wall clock time and date at job start Tue Mar 31 2020 05:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.52356 * 2 1 4 4 C 1.53090 * 109.57201 * 239.84329 * 2 1 3 5 5 O 1.42904 * 109.41610 * 182.45444 * 4 2 1 6 6 C 1.42900 * 114.09591 * 61.15622 * 5 4 2 7 7 C 1.53083 * 109.41753 * 298.84540 * 6 5 4 8 8 C 1.53178 * 109.52124 * 120.12657 * 2 1 3 9 9 H 1.09007 * 109.54136 * 57.08155 * 8 2 1 10 10 C 1.50691 * 109.54496 * 296.81589 * 8 2 1 11 11 O 1.21287 * 120.00005 * 325.50030 * 10 8 2 12 12 N 1.34773 * 120.00235 * 145.49894 * 10 8 2 13 13 C 1.46965 * 120.59386 * 5.47500 * 12 10 8 14 14 C 1.53809 * 108.40398 * 124.75664 * 13 12 10 15 15 N 1.46962 * 108.57621 * 49.63258 * 14 13 12 16 16 C 1.36938 * 120.58986 * 124.62928 * 15 14 13 17 17 H 1.08004 * 120.00122 * 215.60828 * 16 15 14 18 18 C 1.38814 * 120.00075 * 35.61016 * 16 15 14 19 19 N 1.31623 * 120.00090 * 355.87858 * 18 16 15 20 20 Si 1.86798 * 120.00185 * 175.87413 * 18 16 15 21 21 H 1.48497 * 109.47382 * 59.99674 * 20 18 16 22 22 H 1.48498 * 109.47283 * 180.02562 * 20 18 16 23 23 H 1.48508 * 109.47026 * 300.00074 * 20 18 16 24 24 C 1.46963 * 118.81892 * 304.65125 * 15 14 13 25 25 C 1.46967 * 120.59484 * 185.74883 * 12 10 8 26 26 H 1.08996 * 109.46828 * 300.00027 * 1 2 3 27 27 H 1.09007 * 109.46956 * 60.00046 * 1 2 3 28 28 H 1.08996 * 109.47272 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.48487 * 302.43963 * 4 2 1 30 30 H 1.09000 * 109.48214 * 62.47359 * 4 2 1 31 31 H 1.08999 * 109.48155 * 178.86130 * 6 5 4 32 32 H 1.09009 * 109.48920 * 58.83452 * 6 5 4 33 33 H 1.08998 * 109.52558 * 297.70450 * 7 6 5 34 34 H 1.09003 * 109.52590 * 177.51442 * 7 6 5 35 35 H 1.09009 * 109.60643 * 244.54100 * 13 12 10 36 36 H 1.09005 * 109.60612 * 5.04561 * 13 12 10 37 37 H 1.09004 * 109.73433 * 289.85147 * 14 13 12 38 38 H 1.08993 * 109.53565 * 169.30668 * 14 13 12 39 39 H 0.96993 * 120.00311 * 179.97438 * 19 18 16 40 40 H 1.09004 * 109.60701 * 295.48230 * 24 15 14 41 41 H 1.08994 * 109.75274 * 175.05534 * 24 15 14 42 42 H 1.08993 * 109.61408 * 354.95197 * 25 12 10 43 43 H 1.09000 * 109.60991 * 115.29051 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0429 -0.7246 -1.2472 5 8 3.4708 -0.7728 -1.2152 6 6 4.0057 -1.4794 -0.0942 7 6 3.5717 -0.7852 1.1993 8 6 2.0419 -0.7246 1.2487 9 1 1.6376 -1.7366 1.2745 10 6 1.6066 0.0256 2.4809 11 8 1.5361 1.2363 2.4605 12 7 1.2955 -0.6486 3.6057 13 6 1.4901 -2.1032 3.6838 14 6 2.3797 -2.4095 4.9005 15 7 1.8342 -1.7041 6.0687 16 6 1.5173 -2.3894 7.2112 17 1 0.6635 -2.0902 7.8011 18 6 2.2935 -3.4685 7.6112 19 7 3.2845 -3.8839 6.8512 20 14 1.9315 -4.3310 9.2281 21 1 0.5494 -4.8736 9.2012 22 1 2.8965 -5.4428 9.4230 23 1 2.0611 -3.3620 10.3459 24 6 1.6344 -0.2503 5.9888 25 6 0.7500 0.0567 4.7739 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.6453 -1.7394 -1.2674 30 1 1.7172 -0.1887 -2.1387 31 1 5.0939 -1.4872 -0.1551 32 1 3.6340 -2.5042 -0.0992 33 1 3.9771 0.2263 1.2236 34 1 3.9418 -1.3476 2.0565 35 1 0.5245 -2.5957 3.7999 36 1 1.9767 -2.4565 2.7746 37 1 3.3966 -2.0672 4.7085 38 1 2.3819 -3.4830 5.0894 39 1 3.8271 -4.6377 7.1308 40 1 2.5983 0.2456 5.8743 41 1 1.1458 0.1048 6.8961 42 1 0.7478 1.1302 4.5851 43 1 -0.2680 -0.2833 4.9641 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310679551.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:42 Heat of formation + Delta-G solvation = -62.672178 kcal Electronic energy + Delta-G solvation = -23785.952891 eV Core-core repulsion = 20445.568012 eV Total energy + Delta-G solvation = -3340.384879 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.45858 -38.65657 -36.77452 -34.37214 -33.88893 -32.32853 -31.25248 -30.12346 -27.47979 -26.78659 -25.60475 -23.60253 -22.80625 -22.36441 -21.01283 -19.93573 -18.48027 -17.36934 -16.25168 -16.17225 -16.09827 -15.19703 -15.03568 -14.79171 -14.62406 -14.05633 -13.87232 -13.56223 -13.44487 -13.32222 -12.91671 -12.82754 -12.20860 -12.14302 -12.03046 -11.72055 -11.43165 -11.22285 -10.96860 -10.94873 -10.73174 -10.63669 -10.53211 -10.43719 -10.17238 -10.11607 -9.92761 -9.78829 -9.12571 -8.58506 -8.23502 -6.64423 -5.89935 -3.45050 2.96794 3.31264 3.36976 3.37605 3.43928 3.80006 4.38742 4.55648 4.66696 4.71946 4.85456 5.10775 5.13812 5.28240 5.32820 5.33332 5.41281 5.48980 5.51047 5.59171 5.73342 5.76812 5.79317 5.85672 5.92065 5.99783 6.07284 6.13274 6.15985 6.22029 6.30473 6.35180 6.44673 6.77967 6.94031 7.09431 7.23311 7.56557 7.67253 7.93691 8.39488 8.58442 9.11245 9.68900 10.29155 11.15265 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.027392 B = 0.004508 C = 0.004130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.932808 B = 6209.900299 C = 6777.870646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.110 4.110 3 H 0.091 0.909 4 C 0.068 3.932 5 O -0.384 6.384 6 C 0.064 3.936 7 C -0.146 4.146 8 C -0.105 4.105 9 H 0.092 0.908 10 C 0.518 3.482 11 O -0.558 6.558 12 N -0.596 5.596 13 C 0.075 3.925 14 C 0.154 3.846 15 N -0.593 5.593 16 C -0.257 4.257 17 H 0.065 0.935 18 C 0.011 3.989 19 N -0.906 5.906 20 Si 0.906 3.094 21 H -0.282 1.282 22 H -0.289 1.289 23 H -0.282 1.282 24 C 0.132 3.868 25 C 0.094 3.906 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.053 0.947 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.020 0.980 38 H 0.114 0.886 39 H 0.257 0.743 40 H 0.023 0.977 41 H 0.065 0.935 42 H 0.080 0.920 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.678 2.720 -13.571 14.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.129 4.129 3 H 0.109 0.891 4 C -0.009 4.009 5 O -0.302 6.302 6 C -0.013 4.013 7 C -0.184 4.184 8 C -0.126 4.126 9 H 0.110 0.890 10 C 0.306 3.694 11 O -0.438 6.438 12 N -0.328 5.328 13 C -0.049 4.049 14 C 0.028 3.972 15 N -0.315 5.315 16 C -0.387 4.387 17 H 0.083 0.917 18 C -0.188 4.188 19 N -0.550 5.550 20 Si 0.735 3.265 21 H -0.208 1.208 22 H -0.215 1.215 23 H -0.208 1.208 24 C 0.005 3.995 25 C -0.030 4.030 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.112 0.888 31 H 0.115 0.885 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.038 0.962 38 H 0.132 0.868 39 H 0.067 0.933 40 H 0.041 0.959 41 H 0.084 0.916 42 H 0.098 0.902 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.483 3.273 -13.640 14.245 hybrid contribution -0.329 -0.713 1.229 1.458 sum -2.812 2.560 -12.411 12.980 Atomic orbital electron populations 1.21760 0.94331 1.01750 1.02498 1.21644 0.96464 1.01301 0.93490 0.89109 1.22658 0.81032 0.99557 0.97682 1.87918 1.20290 1.76536 1.45471 1.22585 0.99257 0.94482 0.84940 1.22153 0.93644 1.03218 0.99352 1.21429 0.97272 1.00423 0.93482 0.89034 1.20374 0.77123 0.87727 0.84157 1.90621 1.54759 1.14066 1.84315 1.48111 1.62448 1.09217 1.12989 1.22910 1.01575 0.78836 1.01550 1.21482 0.91936 1.00965 0.82839 1.43903 1.75388 1.00410 1.11838 1.19138 1.07550 1.11588 1.00405 0.91728 1.25328 0.95574 1.00003 0.97857 1.69805 1.20690 1.27750 1.36740 0.86323 0.77445 0.78784 0.83906 1.20847 1.21497 1.20773 1.21300 0.96309 0.86956 0.94905 1.22187 0.97384 0.96988 0.86406 0.91915 0.92327 0.92739 0.93118 0.88758 0.88462 0.92851 0.90320 0.89801 0.92047 0.91123 0.96199 0.86820 0.93253 0.95887 0.91614 0.90154 0.92140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.99 37.16 0.33 -1.33 16 2 C -0.11 -1.36 2.13 -90.48 -0.19 -1.56 16 3 H 0.09 1.31 7.76 -51.93 -0.40 0.90 16 4 C 0.07 0.72 6.13 37.20 0.23 0.94 16 5 O -0.38 -4.75 10.77 -35.23 -0.38 -5.12 16 6 C 0.06 0.71 6.84 37.20 0.25 0.96 16 7 C -0.15 -1.90 5.34 -26.60 -0.14 -2.04 16 8 C -0.10 -1.44 1.30 -91.59 -0.12 -1.56 16 9 H 0.09 1.16 6.17 -51.93 -0.32 0.84 16 10 C 0.52 9.01 5.73 -10.99 -0.06 8.95 16 11 O -0.56 -11.24 15.28 5.55 0.08 -11.16 16 12 N -0.60 -10.80 2.94 -172.21 -0.51 -11.31 16 13 C 0.08 1.34 6.36 -3.37 -0.02 1.32 16 14 C 0.15 3.45 5.49 -3.37 -0.02 3.43 16 15 N -0.59 -14.32 2.97 -171.77 -0.51 -14.83 16 16 C -0.26 -6.76 9.55 -15.06 -0.14 -6.90 16 17 H 0.07 1.67 7.83 -52.48 -0.41 1.25 16 18 C 0.01 0.29 5.32 -17.43 -0.09 0.20 16 19 N -0.91 -24.79 10.60 55.49 0.59 -24.20 16 20 Si 0.91 20.80 29.56 -169.99 -5.02 15.78 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 C 0.13 2.79 6.67 -3.60 -0.02 2.76 16 25 C 0.09 1.76 6.60 -3.60 -0.02 1.74 16 26 H 0.06 0.86 7.08 -51.93 -0.37 0.49 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.05 0.53 8.14 -51.92 -0.42 0.10 16 33 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.08 1.13 8.04 -51.93 -0.42 0.71 16 35 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 36 H 0.07 1.06 5.42 -51.93 -0.28 0.78 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.11 2.82 5.83 -51.93 -0.30 2.52 16 39 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 40 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 1.32 7.94 -51.93 -0.41 0.91 16 42 H 0.08 1.48 6.99 -51.93 -0.36 1.11 16 43 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 330.82 15.07 4.99 4.99 Total: -1.00 -29.86 330.82 -7.85 -37.71 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -7.06 Total: 1.23 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: -0.02 Total: 6.93 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: -0.43 Total: -50.35 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: -0.29 Total: -16.28 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.86 -7.85 -37.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310679551.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.963 kcal (2) G-P(sol) polarization free energy of solvation -29.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds