Wall clock time and date at job start Tue Mar 31 2020 05:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.52356 * 2 1 4 4 C 1.53090 * 109.57201 * 239.84329 * 2 1 3 5 5 O 1.42904 * 109.41610 * 182.45444 * 4 2 1 6 6 C 1.42900 * 114.09591 * 61.15622 * 5 4 2 7 7 C 1.53083 * 109.41753 * 298.84540 * 6 5 4 8 8 C 1.53178 * 109.52124 * 120.12657 * 2 1 3 9 9 H 1.09007 * 109.54136 * 57.08155 * 8 2 1 10 10 C 1.50691 * 109.54496 * 296.81589 * 8 2 1 11 11 O 1.21287 * 120.00005 * 325.50030 * 10 8 2 12 12 N 1.34773 * 120.00235 * 145.49894 * 10 8 2 13 13 C 1.46965 * 120.59386 * 5.47500 * 12 10 8 14 14 C 1.53809 * 108.40398 * 124.75664 * 13 12 10 15 15 N 1.46962 * 108.57621 * 49.63258 * 14 13 12 16 16 C 1.36938 * 120.58986 * 124.62928 * 15 14 13 17 17 H 1.08004 * 120.00122 * 215.60828 * 16 15 14 18 18 C 1.38814 * 120.00075 * 35.61016 * 16 15 14 19 19 N 1.31623 * 120.00090 * 355.87858 * 18 16 15 20 20 Si 1.86798 * 120.00185 * 175.87413 * 18 16 15 21 21 H 1.48497 * 109.47382 * 59.99674 * 20 18 16 22 22 H 1.48498 * 109.47283 * 180.02562 * 20 18 16 23 23 H 1.48508 * 109.47026 * 300.00074 * 20 18 16 24 24 C 1.46963 * 118.81892 * 304.65125 * 15 14 13 25 25 C 1.46967 * 120.59484 * 185.74883 * 12 10 8 26 26 H 1.08996 * 109.46828 * 300.00027 * 1 2 3 27 27 H 1.09007 * 109.46956 * 60.00046 * 1 2 3 28 28 H 1.08996 * 109.47272 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.48487 * 302.43963 * 4 2 1 30 30 H 1.09000 * 109.48214 * 62.47359 * 4 2 1 31 31 H 1.08999 * 109.48155 * 178.86130 * 6 5 4 32 32 H 1.09009 * 109.48920 * 58.83452 * 6 5 4 33 33 H 1.08998 * 109.52558 * 297.70450 * 7 6 5 34 34 H 1.09003 * 109.52590 * 177.51442 * 7 6 5 35 35 H 1.09009 * 109.60643 * 244.54100 * 13 12 10 36 36 H 1.09005 * 109.60612 * 5.04561 * 13 12 10 37 37 H 1.09004 * 109.73433 * 289.85147 * 14 13 12 38 38 H 1.08993 * 109.53565 * 169.30668 * 14 13 12 39 39 H 0.96993 * 120.00311 * 179.97438 * 19 18 16 40 40 H 1.09004 * 109.60701 * 295.48230 * 24 15 14 41 41 H 1.08994 * 109.75274 * 175.05534 * 24 15 14 42 42 H 1.08993 * 109.61408 * 354.95197 * 25 12 10 43 43 H 1.09000 * 109.60991 * 115.29051 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0429 -0.7246 -1.2472 5 8 3.4708 -0.7728 -1.2152 6 6 4.0057 -1.4794 -0.0942 7 6 3.5717 -0.7852 1.1993 8 6 2.0419 -0.7246 1.2487 9 1 1.6376 -1.7366 1.2745 10 6 1.6066 0.0256 2.4809 11 8 1.5361 1.2363 2.4605 12 7 1.2955 -0.6486 3.6057 13 6 1.4901 -2.1032 3.6838 14 6 2.3797 -2.4095 4.9005 15 7 1.8342 -1.7041 6.0687 16 6 1.5173 -2.3894 7.2112 17 1 0.6635 -2.0902 7.8011 18 6 2.2935 -3.4685 7.6112 19 7 3.2845 -3.8839 6.8512 20 14 1.9315 -4.3310 9.2281 21 1 0.5494 -4.8736 9.2012 22 1 2.8965 -5.4428 9.4230 23 1 2.0611 -3.3620 10.3459 24 6 1.6344 -0.2503 5.9888 25 6 0.7500 0.0567 4.7739 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.6453 -1.7394 -1.2674 30 1 1.7172 -0.1887 -2.1387 31 1 5.0939 -1.4872 -0.1551 32 1 3.6340 -2.5042 -0.0992 33 1 3.9771 0.2263 1.2236 34 1 3.9418 -1.3476 2.0565 35 1 0.5245 -2.5957 3.7999 36 1 1.9767 -2.4565 2.7746 37 1 3.3966 -2.0672 4.7085 38 1 2.3819 -3.4830 5.0894 39 1 3.8271 -4.6377 7.1308 40 1 2.5983 0.2456 5.8743 41 1 1.1458 0.1048 6.8961 42 1 0.7478 1.1302 4.5851 43 1 -0.2680 -0.2833 4.9641 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310679551.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:42 Heat of formation + Delta-G solvation = -81.086421 kcal Electronic energy + Delta-G solvation = -23786.751393 eV Core-core repulsion = 20445.568012 eV Total energy + Delta-G solvation = -3341.183381 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.70571 -39.83206 -38.38183 -35.63875 -35.41237 -33.52167 -32.88289 -31.78369 -28.99467 -27.89954 -26.78039 -25.32108 -24.39869 -23.31767 -22.46945 -21.23368 -19.95662 -18.89851 -17.84202 -17.34859 -17.16603 -16.76570 -16.33574 -16.23590 -15.61838 -15.46801 -15.27989 -15.12784 -15.03964 -14.89975 -14.22827 -14.11472 -13.46723 -13.32848 -13.07657 -13.02817 -12.89116 -12.79310 -12.48072 -12.45011 -12.24954 -12.08589 -11.98123 -11.86286 -11.73512 -11.59604 -11.34742 -10.88578 -10.57308 -10.33158 -9.81234 -8.56184 -7.88519 -5.47714 1.48860 1.50801 1.57020 1.58623 2.02779 2.49217 2.96287 3.26772 3.42882 3.57686 3.60037 3.72515 3.90404 4.05316 4.22745 4.26097 4.30316 4.32697 4.43571 4.46270 4.53626 4.61373 4.62812 4.66739 4.73364 4.75203 4.79880 4.82622 4.91330 5.03415 5.05819 5.10599 5.23380 5.26447 5.32996 5.56417 5.61947 5.73262 6.25448 6.42123 6.49438 7.13507 7.16734 7.76584 8.32992 9.13595 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.027392 B = 0.004508 C = 0.004130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.932808 B = 6209.900299 C = 6777.870646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.106 4.106 3 H 0.064 0.936 4 C 0.069 3.931 5 O -0.399 6.399 6 C 0.067 3.933 7 C -0.143 4.143 8 C -0.101 4.101 9 H 0.111 0.889 10 C 0.517 3.483 11 O -0.588 6.588 12 N -0.602 5.602 13 C 0.092 3.908 14 C 0.160 3.840 15 N -0.610 5.610 16 C -0.271 4.271 17 H 0.066 0.934 18 C -0.036 4.036 19 N -0.930 5.930 20 Si 0.969 3.031 21 H -0.274 1.274 22 H -0.292 1.292 23 H -0.281 1.281 24 C 0.134 3.866 25 C 0.103 3.897 26 H 0.034 0.966 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.103 0.897 37 H -0.004 1.004 38 H 0.090 0.910 39 H 0.254 0.746 40 H 0.006 0.994 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.617 1.742 -14.955 15.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.126 4.126 3 H 0.082 0.918 4 C -0.008 4.008 5 O -0.318 6.318 6 C -0.009 4.009 7 C -0.181 4.181 8 C -0.122 4.122 9 H 0.129 0.871 10 C 0.307 3.693 11 O -0.469 6.469 12 N -0.333 5.333 13 C -0.032 4.032 14 C 0.034 3.966 15 N -0.334 5.334 16 C -0.401 4.401 17 H 0.084 0.916 18 C -0.232 4.232 19 N -0.575 5.575 20 Si 0.797 3.203 21 H -0.199 1.199 22 H -0.218 1.218 23 H -0.207 1.207 24 C 0.007 3.993 25 C -0.021 4.021 26 H 0.053 0.947 27 H 0.096 0.904 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.130 0.870 31 H 0.128 0.872 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.121 0.879 37 H 0.014 0.986 38 H 0.108 0.892 39 H 0.063 0.937 40 H 0.024 0.976 41 H 0.090 0.910 42 H 0.100 0.900 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.434 2.306 -15.040 15.598 hybrid contribution -0.017 -0.328 1.675 1.707 sum -3.451 1.978 -13.365 13.944 Atomic orbital electron populations 1.21726 0.93413 1.02711 1.02059 1.21623 0.97194 0.99942 0.93801 0.91758 1.22782 0.80201 1.00691 0.97082 1.87911 1.21333 1.76882 1.45651 1.22657 1.00156 0.94887 0.83249 1.22138 0.93050 1.02302 1.00651 1.21511 0.97735 1.00892 0.92099 0.87114 1.21052 0.75918 0.87532 0.84800 1.90605 1.55821 1.15641 1.84881 1.48199 1.62603 1.09338 1.13187 1.22679 1.01069 0.78730 1.00685 1.21281 0.91769 0.99276 0.84299 1.44148 1.75521 1.01580 1.12111 1.19430 1.07691 1.11786 1.01167 0.91606 1.26008 0.95691 1.00941 1.00588 1.69980 1.21563 1.28100 1.37893 0.85337 0.77389 0.77472 0.80149 1.19947 1.21835 1.20697 1.21332 0.96054 0.85359 0.96543 1.21998 0.97184 0.97226 0.85677 0.94710 0.90441 0.91017 0.90983 0.87005 0.87227 0.90836 0.92382 0.90426 0.91379 0.87865 0.98568 0.89165 0.93677 0.97577 0.90982 0.90016 0.91170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.99 71.98 0.65 -2.26 16 2 C -0.11 -2.44 2.13 -10.70 -0.02 -2.46 16 3 H 0.06 1.82 7.76 -2.39 -0.02 1.80 16 4 C 0.07 1.24 6.13 72.01 0.44 1.68 16 5 O -0.40 -8.83 10.77 -148.98 -1.60 -10.43 16 6 C 0.07 1.31 6.84 72.01 0.49 1.80 16 7 C -0.14 -3.57 5.34 30.68 0.16 -3.41 16 8 C -0.10 -2.61 1.30 -11.42 -0.01 -2.62 16 9 H 0.11 2.42 6.17 -2.38 -0.01 2.41 16 10 C 0.52 17.65 5.73 87.65 0.50 18.15 16 11 O -0.59 -23.83 15.28 -3.05 -0.05 -23.87 16 12 N -0.60 -21.34 2.94 -817.15 -2.40 -23.74 16 13 C 0.09 3.15 6.36 86.56 0.55 3.70 16 14 C 0.16 7.21 5.49 86.56 0.48 7.68 16 15 N -0.61 -29.72 2.97 -697.36 -2.07 -31.79 16 16 C -0.27 -14.26 9.55 84.03 0.80 -13.46 16 17 H 0.07 3.38 7.83 -2.91 -0.02 3.36 16 18 C -0.04 -1.92 5.32 84.86 0.45 -1.46 16 19 N -0.93 -51.56 10.60 21.65 0.23 -51.33 16 20 Si 0.97 42.73 29.56 68.60 2.03 44.75 16 21 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 22 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 23 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 24 C 0.13 5.68 6.67 86.42 0.58 6.26 16 25 C 0.10 3.82 6.60 86.41 0.57 4.39 16 26 H 0.03 0.90 7.08 -2.39 -0.02 0.89 16 27 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 28 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 33 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.08 2.02 8.04 -2.39 -0.02 2.00 16 35 H 0.07 2.28 8.14 -2.38 -0.02 2.27 16 36 H 0.10 2.84 5.42 -2.38 -0.01 2.83 16 37 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 38 H 0.09 4.53 5.83 -2.39 -0.01 4.52 16 39 H 0.25 13.65 8.31 -92.71 -0.77 12.88 16 40 H 0.01 0.28 8.14 -2.38 -0.02 0.26 16 41 H 0.07 2.91 7.94 -2.39 -0.02 2.89 16 42 H 0.08 3.00 6.99 -2.39 -0.02 2.98 16 43 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -64.81 330.82 2.75 -62.06 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: 0.98 Total: 16.36 kcal Atomic # 6 Polarization: 12.35 SS G_CDS: 5.64 Total: 17.99 kcal Atomic # 7 Polarization: -102.61 SS G_CDS: -4.25 Total: -106.86 kcal Atomic # 8 Polarization: -32.66 SS G_CDS: -1.65 Total: -34.31 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.75 kcal Total: -64.81 2.75 -62.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310679551.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.021 kcal (2) G-P(sol) polarization free energy of solvation -64.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds