Wall clock time and date at job start Tue Mar 31 2020 05:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.34777 * 120.00015 * 84.99707 * 12 2 1 14 14 O 1.21282 * 120.00331 * 0.02562 * 13 12 2 15 15 C 1.50709 * 119.99692 * 180.02562 * 13 12 2 16 16 N 1.46501 * 109.46866 * 180.02562 * 15 13 12 17 17 C 1.34771 * 119.99886 * 179.97438 * 16 15 13 18 18 O 1.21282 * 120.00271 * 0.02562 * 17 16 15 19 19 C 1.50705 * 119.99859 * 179.97438 * 17 16 15 20 20 C 1.53003 * 109.46976 * 180.02562 * 19 17 16 21 21 C 1.54267 * 110.03685 * 292.91334 * 20 19 17 22 22 C 1.54962 * 104.16006 * 217.13673 * 21 20 19 23 23 C 1.54889 * 102.77792 * 37.88503 * 22 21 20 24 24 C 1.53875 * 110.02962 * 175.69215 * 20 19 17 25 25 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 26 26 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 27 27 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 0.97005 * 119.99880 * 265.00058 * 12 2 1 30 30 H 1.09003 * 109.46726 * 300.00059 * 15 13 12 31 31 H 1.08992 * 109.47335 * 60.00408 * 15 13 12 32 32 H 0.97004 * 119.99899 * 0.02562 * 16 15 13 33 33 H 1.08991 * 109.47350 * 300.00788 * 19 17 16 34 34 H 1.09001 * 109.46781 * 60.00824 * 19 17 16 35 35 H 1.09002 * 110.01332 * 54.30483 * 20 19 17 36 36 H 1.09005 * 110.48093 * 335.78257 * 21 20 19 37 37 H 1.09002 * 110.48354 * 98.42510 * 21 20 19 38 38 H 1.09002 * 110.72092 * 279.57460 * 22 21 20 39 39 H 1.08999 * 110.92477 * 156.29301 * 22 21 20 40 40 H 1.09001 * 110.48566 * 203.40121 * 23 22 21 41 41 H 1.09001 * 110.59996 * 80.81748 * 23 22 21 42 42 H 1.09006 * 110.03200 * 238.57063 * 24 20 19 43 43 H 1.08995 * 110.03462 * 0.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0180 -2.3571 14 8 1.8590 1.1588 -2.4114 15 6 2.6488 -0.7286 -3.5878 16 7 2.6987 0.2131 -4.7090 17 6 3.1203 -0.2026 -5.9198 18 8 3.4580 -1.3562 -6.0813 19 6 3.1711 0.7659 -7.0733 20 6 3.6807 0.0446 -8.3227 21 6 5.1570 -0.3612 -8.1336 22 6 5.7896 -0.1531 -9.5328 23 6 5.0871 1.1312 -10.0388 24 6 3.6360 0.9929 -9.5337 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7089 1.1611 3.4845 29 1 2.2490 -1.6317 -1.1527 30 1 3.6480 -1.1211 -3.3986 31 1 1.9760 -1.5503 -3.8327 32 1 2.4290 1.1358 -4.5798 33 1 2.1720 1.1582 -7.2627 34 1 3.8438 1.5879 -6.8282 35 1 3.0726 -0.8388 -8.5176 36 1 5.6384 0.2830 -7.3978 37 1 5.2297 -1.4064 -7.8327 38 1 5.5679 -0.9974 -10.1857 39 1 6.8659 0.0005 -9.4545 40 1 5.1097 1.1746 -11.1277 41 1 5.5563 2.0181 -9.6129 42 1 3.0070 0.5692 -10.3167 43 1 3.2518 1.9670 -9.2313 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330388215.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:11 Heat of formation + Delta-G solvation = -105.153904 kcal Electronic energy + Delta-G solvation = -21762.884383 eV Core-core repulsion = 18420.657358 eV Total energy + Delta-G solvation = -3342.227025 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.11493 -38.97463 -37.82696 -35.09602 -34.12617 -32.49737 -31.79542 -29.53619 -28.84385 -27.53851 -25.39681 -25.20555 -21.38911 -20.91623 -20.48447 -19.76147 -19.52081 -17.89431 -16.69019 -16.23164 -15.86354 -15.62772 -15.38579 -15.10953 -14.87043 -14.55699 -14.06934 -13.52787 -13.40320 -13.38832 -12.75462 -12.61112 -12.41453 -12.06210 -11.71009 -11.42974 -11.27851 -11.16783 -11.15234 -10.98722 -10.94794 -10.81835 -10.79297 -10.60168 -10.39221 -10.28820 -9.81462 -9.26090 -9.11811 -9.06222 -8.61786 -8.04752 -6.17586 -4.27169 2.65983 3.10074 3.18098 3.21960 3.28934 3.31345 4.03515 4.33388 4.36847 4.41102 4.52644 4.86939 4.99499 5.10448 5.14890 5.26061 5.31173 5.38633 5.44352 5.47358 5.51760 5.55482 5.59838 5.63558 5.71594 5.84346 5.91316 6.10353 6.15550 6.30643 6.39473 6.75212 6.88334 7.07017 7.32218 7.45668 7.57200 7.62513 7.83238 8.07935 8.24147 8.52842 8.68705 8.95366 9.40229 10.88393 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.043985 B = 0.002557 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.428693 B =10946.639475 C =11226.614442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.050 0.950 4 C -0.535 4.535 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.273 1.273 11 H -0.285 1.285 12 N -0.702 5.702 13 C 0.496 3.504 14 O -0.555 6.555 15 C 0.097 3.903 16 N -0.716 5.716 17 C 0.512 3.488 18 O -0.544 6.544 19 C -0.134 4.134 20 C -0.076 4.076 21 C -0.114 4.114 22 C -0.128 4.128 23 C -0.125 4.125 24 C -0.123 4.123 25 H 0.091 0.909 26 H 0.014 0.986 27 H 0.027 0.973 28 H 0.265 0.735 29 H 0.392 0.608 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.412 0.588 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.369 -0.651 -20.943 21.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.163 3.837 3 H 0.068 0.932 4 C -0.574 4.574 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.198 1.198 11 H -0.210 1.210 12 N -0.349 5.349 13 C 0.280 3.720 14 O -0.435 6.435 15 C -0.031 4.031 16 N -0.371 5.371 17 C 0.299 3.701 18 O -0.422 6.422 19 C -0.174 4.174 20 C -0.095 4.095 21 C -0.151 4.151 22 C -0.165 4.165 23 C -0.163 4.163 24 C -0.160 4.160 25 H 0.110 0.890 26 H 0.034 0.966 27 H 0.046 0.954 28 H 0.075 0.925 29 H 0.225 0.775 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.249 0.751 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.298 -0.502 -20.885 21.553 hybrid contribution 0.175 -0.461 1.113 1.218 sum 5.473 -0.963 -19.772 20.538 Atomic orbital electron populations 1.22086 0.98301 0.99240 1.00978 1.18798 0.91126 0.94012 0.79811 0.93240 1.21209 1.32615 1.13312 0.90248 0.91961 1.24897 0.94778 0.94935 0.99124 1.69901 1.35812 1.22374 1.23974 0.86421 0.79198 0.79262 0.82070 1.20496 1.19819 1.21045 1.46493 1.64340 1.13778 1.10305 1.20345 0.79011 0.87650 0.85030 1.90641 1.51962 1.16008 1.84904 1.21132 1.03160 0.92858 0.85908 1.45797 1.67344 1.15018 1.08942 1.20710 0.76590 0.89248 0.83588 1.90680 1.48317 1.19296 1.83880 1.21850 1.03785 0.98407 0.93368 1.21534 0.97469 0.98031 0.92463 1.22410 0.94095 1.02319 0.96323 1.22540 0.99380 0.97567 0.97035 1.22358 0.95581 0.98183 1.00145 1.22242 0.97085 0.99483 0.97206 0.89032 0.96646 0.95360 0.92514 0.77514 0.88930 0.88982 0.75065 0.88838 0.88749 0.90226 0.92034 0.90736 0.91680 0.91832 0.91977 0.91722 0.91742 0.91588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 9.26 37.16 0.34 -3.24 16 2 C 0.26 6.54 2.56 -69.09 -0.18 6.36 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 4 C -0.54 -13.91 8.73 -34.44 -0.30 -14.22 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -24.50 11.32 55.43 0.63 -23.87 16 8 Si 0.90 20.39 29.54 -169.99 -5.02 15.36 16 9 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 10 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 N -0.70 -13.98 5.07 -54.93 -0.28 -14.26 16 13 C 0.50 9.26 7.86 -10.98 -0.09 9.18 16 14 O -0.56 -12.18 15.33 5.56 0.09 -12.10 16 15 C 0.10 1.41 6.15 -5.19 -0.03 1.38 16 16 N -0.72 -9.67 5.53 -61.47 -0.34 -10.01 16 17 C 0.51 6.60 7.61 -10.99 -0.08 6.52 16 18 O -0.54 -8.55 14.78 5.56 0.08 -8.47 16 19 C -0.13 -1.25 4.83 -27.88 -0.13 -1.38 16 20 C -0.08 -0.71 2.55 -89.50 -0.23 -0.93 16 21 C -0.11 -1.12 5.40 -25.03 -0.14 -1.26 16 22 C -0.13 -1.02 6.91 -24.70 -0.17 -1.19 16 23 C -0.13 -0.89 6.83 -25.07 -0.17 -1.07 16 24 C -0.12 -0.91 6.46 -25.61 -0.17 -1.07 16 25 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 26 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.39 6.73 8.54 -40.82 -0.35 6.38 16 30 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 31 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.41 5.45 7.44 -40.82 -0.30 5.14 16 33 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.09 0.76 8.02 -51.93 -0.42 0.35 16 35 H 0.08 0.84 7.95 -51.93 -0.41 0.43 16 36 H 0.06 0.62 7.77 -51.93 -0.40 0.21 16 37 H 0.07 0.86 7.63 -51.93 -0.40 0.47 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.44 7.67 -51.93 -0.40 0.04 16 LS Contribution 349.47 15.07 5.27 5.27 Total: -1.00 -30.53 349.47 -8.17 -38.70 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -7.16 Total: 8.64 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: -1.43 Total: 0.74 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: 0.01 Total: -48.15 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: 0.17 Total: -20.56 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.53 -8.17 -38.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330388215.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.456 kcal (2) G-P(sol) polarization free energy of solvation -30.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds