Wall clock time and date at job start Tue Mar 31 2020 05:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46812 * 2 1 4 4 C 1.50695 * 109.47063 * 239.99851 * 2 1 3 5 5 H 1.07998 * 120.00418 * 245.62304 * 4 2 1 6 6 C 1.37879 * 120.00201 * 65.62961 * 4 2 1 7 7 N 1.31514 * 120.00393 * 197.18198 * 6 4 2 8 8 Si 1.86804 * 119.99786 * 17.45333 * 6 4 2 9 9 H 1.48502 * 109.47029 * 179.72709 * 8 6 4 10 10 H 1.48503 * 109.46948 * 299.72609 * 8 6 4 11 11 H 1.48492 * 109.47033 * 59.72641 * 8 6 4 12 12 N 1.46502 * 109.47016 * 119.99690 * 2 1 3 13 13 C 1.34775 * 120.00053 * 275.00255 * 12 2 1 14 14 O 1.21280 * 120.00115 * 359.97438 * 13 12 2 15 15 C 1.50697 * 119.99887 * 180.02562 * 13 12 2 16 16 N 1.46502 * 109.47217 * 179.97438 * 15 13 12 17 17 C 1.34771 * 119.99940 * 180.02562 * 16 15 13 18 18 O 1.21280 * 120.00406 * 0.02562 * 17 16 15 19 19 C 1.50705 * 119.99831 * 179.97438 * 17 16 15 20 20 C 1.52997 * 109.46986 * 180.02562 * 19 17 16 21 21 C 1.54267 * 110.03614 * 292.90750 * 20 19 17 22 22 C 1.54957 * 104.16307 * 217.14025 * 21 20 19 23 23 C 1.54885 * 102.77881 * 37.88914 * 22 21 20 24 24 C 1.53878 * 110.03130 * 175.69261 * 20 19 17 25 25 H 1.08994 * 109.46957 * 306.33629 * 1 2 3 26 26 H 1.09002 * 109.47065 * 66.34399 * 1 2 3 27 27 H 1.09000 * 109.46665 * 186.33884 * 1 2 3 28 28 H 0.97001 * 119.99221 * 355.17115 * 7 6 4 29 29 H 0.96996 * 119.99659 * 94.99859 * 12 2 1 30 30 H 1.08996 * 109.47190 * 300.00321 * 15 13 12 31 31 H 1.09000 * 109.47003 * 60.00180 * 15 13 12 32 32 H 0.97002 * 119.99801 * 359.97438 * 16 15 13 33 33 H 1.08994 * 109.47102 * 300.00065 * 19 17 16 34 34 H 1.09000 * 109.46800 * 60.00207 * 19 17 16 35 35 H 1.09000 * 110.02196 * 54.30437 * 20 19 17 36 36 H 1.09003 * 110.48266 * 335.78825 * 21 20 19 37 37 H 1.09003 * 110.48401 * 98.42444 * 21 20 19 38 38 H 1.09002 * 110.72175 * 279.56839 * 22 21 20 39 39 H 1.09004 * 110.92074 * 156.29766 * 22 21 20 40 40 H 1.09003 * 110.48597 * 203.40552 * 23 22 21 41 41 H 1.08997 * 110.60202 * 80.82137 * 23 22 21 42 42 H 1.09001 * 110.03178 * 238.56997 * 24 20 19 43 43 H 1.09002 * 110.03162 * 0.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5763 -1.6384 -1.1340 6 6 1.7977 -0.1756 -2.4794 7 7 1.9225 -0.9278 -3.5509 8 14 1.3097 1.6194 -2.6501 9 1 1.1227 1.9471 -4.0864 10 1 0.0398 1.8589 -1.9184 11 1 2.3784 2.4792 -2.0813 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8590 1.1587 2.4115 15 6 2.6499 -0.7284 3.5875 16 7 2.6996 0.2131 4.7088 17 6 3.1220 -0.2024 5.9193 18 8 3.4615 -1.3555 6.0803 19 6 3.1737 0.7662 7.0727 20 6 3.6853 0.0454 8.3215 21 6 2.6549 -1.0049 8.7849 22 6 2.7198 -0.9428 10.3319 23 6 2.9062 0.5701 10.6065 24 6 3.8455 1.0463 9.4793 25 1 -0.3633 0.6089 0.8278 26 1 -0.3633 0.4124 -0.9413 27 1 -0.3633 -1.0214 0.1135 28 1 2.2471 -1.8383 -3.4691 29 1 2.2490 -1.6317 1.1527 30 1 1.9778 -1.5507 3.8325 31 1 3.6493 -1.1201 3.3979 32 1 2.4292 1.1357 4.5798 33 1 3.8460 1.5882 6.8270 34 1 2.1746 1.1584 7.2627 35 1 4.6399 -0.4362 8.1096 36 1 1.6571 -0.7410 8.4342 37 1 2.9350 -1.9967 8.4300 38 1 3.5717 -1.5111 10.7053 39 1 1.7919 -1.3045 10.7752 40 1 3.3694 0.7267 11.5808 41 1 1.9500 1.0905 10.5518 42 1 4.8777 1.0497 9.8297 43 1 3.5583 2.0454 9.1516 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330388217.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:14 Heat of formation + Delta-G solvation = -104.635963 kcal Electronic energy + Delta-G solvation = -21835.554166 eV Core-core repulsion = 18493.349600 eV Total energy + Delta-G solvation = -3342.204565 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.20079 -39.13417 -37.89359 -35.27447 -34.23125 -32.56204 -31.85812 -30.12929 -28.88479 -27.78646 -25.44441 -24.82113 -21.29357 -20.94157 -20.55086 -19.81483 -19.65067 -18.15110 -17.31788 -16.33479 -16.07668 -15.82277 -15.57678 -15.15711 -14.90835 -14.51572 -13.89505 -13.56740 -13.48598 -13.38683 -12.85527 -12.72733 -12.68209 -12.25179 -12.09742 -11.77585 -11.47435 -11.45525 -11.31890 -11.19228 -10.99178 -10.83918 -10.64431 -10.54095 -10.10778 -9.88815 -9.86456 -9.45394 -9.17132 -9.13282 -8.38653 -8.32993 -6.63935 -4.27784 2.59181 3.00330 3.01124 3.33940 3.40281 3.55249 3.90843 4.32222 4.36806 4.36925 4.48239 4.80267 4.94911 5.05455 5.11514 5.16154 5.22198 5.32164 5.38672 5.42367 5.43244 5.47215 5.55236 5.59558 5.67752 5.79989 5.87457 6.06577 6.10807 6.26279 6.28381 6.33107 6.47038 6.59408 6.86457 7.17307 7.26791 7.48761 7.55597 8.14909 8.18432 8.32562 8.59022 8.80462 9.41463 10.77074 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.046298 B = 0.002671 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.629392 B =10478.745263 C =10707.234164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.241 3.759 3 H 0.042 0.958 4 C -0.620 4.620 5 H 0.062 0.938 6 C 0.039 3.961 7 N -0.896 5.896 8 Si 1.043 2.957 9 H -0.283 1.283 10 H -0.271 1.271 11 H -0.280 1.280 12 N -0.695 5.695 13 C 0.497 3.503 14 O -0.557 6.557 15 C 0.098 3.902 16 N -0.717 5.717 17 C 0.512 3.488 18 O -0.543 6.543 19 C -0.134 4.134 20 C -0.076 4.076 21 C -0.114 4.114 22 C -0.128 4.128 23 C -0.125 4.125 24 C -0.122 4.122 25 H 0.029 0.971 26 H 0.063 0.937 27 H 0.044 0.956 28 H 0.269 0.731 29 H 0.397 0.603 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.412 0.588 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.571 2.775 24.505 24.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.138 3.862 3 H 0.060 0.940 4 C -0.658 4.658 5 H 0.080 0.920 6 C -0.168 4.168 7 N -0.529 5.529 8 Si 0.871 3.129 9 H -0.208 1.208 10 H -0.198 1.198 11 H -0.206 1.206 12 N -0.342 5.342 13 C 0.281 3.719 14 O -0.437 6.437 15 C -0.030 4.030 16 N -0.372 5.372 17 C 0.299 3.701 18 O -0.420 6.420 19 C -0.174 4.174 20 C -0.095 4.095 21 C -0.151 4.151 22 C -0.165 4.165 23 C -0.163 4.163 24 C -0.160 4.160 25 H 0.048 0.952 26 H 0.082 0.918 27 H 0.064 0.936 28 H 0.080 0.920 29 H 0.230 0.770 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.249 0.751 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.098 0.902 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.151 3.924 23.469 23.823 hybrid contribution 0.477 -1.297 0.853 1.624 sum 1.628 2.627 24.322 24.518 Atomic orbital electron populations 1.22506 0.98722 1.00219 1.00490 1.19057 0.90670 0.94195 0.82253 0.94027 1.22067 1.41972 1.10674 0.91048 0.91961 1.25708 0.94263 1.05159 0.91708 1.70880 1.40721 1.09958 1.31301 0.84058 0.77565 0.75001 0.76282 1.20841 1.19768 1.20624 1.46244 1.64326 1.13967 1.09696 1.20414 0.78789 0.87629 0.85065 1.90631 1.52083 1.15995 1.84975 1.21104 1.03295 0.92865 0.85711 1.45792 1.67501 1.14981 1.08939 1.20724 0.76593 0.89275 0.83520 1.90686 1.48205 1.19296 1.83809 1.21849 1.03893 0.98316 0.93319 1.21538 1.00017 0.95439 0.92536 1.22409 0.98468 0.99799 0.94470 1.22539 1.01417 0.96112 0.96456 1.22357 0.99533 0.96199 0.98171 1.22243 0.99849 0.98761 0.95159 0.95179 0.91784 0.93636 0.92044 0.76993 0.88843 0.88773 0.75077 0.88802 0.88754 0.90195 0.92070 0.90737 0.91650 0.91824 0.91948 0.91732 0.91707 0.91594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.54 9.16 37.16 0.34 -3.20 16 2 C 0.24 5.64 2.14 -69.08 -0.15 5.49 16 3 H 0.04 1.05 6.23 -51.93 -0.32 0.73 16 4 C -0.62 -16.45 9.00 -34.44 -0.31 -16.76 16 5 H 0.06 1.73 7.96 -52.49 -0.42 1.31 16 6 C 0.04 1.07 5.29 -17.82 -0.09 0.97 16 7 N -0.90 -26.34 13.70 55.43 0.76 -25.59 16 8 Si 1.04 24.62 26.29 -169.99 -4.47 20.15 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.27 -5.98 5.76 56.52 0.33 -5.65 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 N -0.69 -13.42 5.07 -54.93 -0.28 -13.70 16 13 C 0.50 8.85 7.86 -10.99 -0.09 8.76 16 14 O -0.56 -11.46 15.33 5.56 0.09 -11.37 16 15 C 0.10 1.37 6.15 -5.19 -0.03 1.34 16 16 N -0.72 -9.25 5.53 -61.47 -0.34 -9.59 16 17 C 0.51 6.37 7.61 -10.99 -0.08 6.29 16 18 O -0.54 -8.34 14.78 5.56 0.08 -8.26 16 19 C -0.13 -1.19 4.83 -27.88 -0.13 -1.32 16 20 C -0.08 -0.68 2.55 -89.50 -0.23 -0.91 16 21 C -0.11 -1.08 5.40 -25.03 -0.14 -1.22 16 22 C -0.13 -0.99 6.91 -24.70 -0.17 -1.16 16 23 C -0.13 -0.86 6.83 -25.07 -0.17 -1.03 16 24 C -0.12 -0.87 6.46 -25.61 -0.17 -1.04 16 25 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 1.45 4.88 -51.93 -0.25 1.20 16 27 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.27 7.84 8.73 -40.82 -0.36 7.49 16 29 H 0.40 6.80 8.53 -40.82 -0.35 6.45 16 30 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.41 5.13 7.44 -40.82 -0.30 4.82 16 33 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.09 0.71 8.02 -51.93 -0.42 0.30 16 35 H 0.08 0.82 7.95 -51.93 -0.41 0.41 16 36 H 0.06 0.59 7.77 -51.93 -0.40 0.18 16 37 H 0.07 0.84 7.63 -51.93 -0.40 0.44 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.42 7.67 -51.93 -0.40 0.02 16 LS Contribution 345.08 15.07 5.20 5.20 Total: -1.00 -31.34 345.08 -7.51 -38.85 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -7.13 Total: 8.08 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: -1.42 Total: -3.78 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: 0.14 Total: -48.87 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: 0.17 Total: -19.63 kcal Atomic # 14 Polarization: 24.62 SS G_CDS: -4.47 Total: 20.15 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.34 -7.51 -38.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330388217.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.789 kcal (2) G-P(sol) polarization free energy of solvation -31.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds