Wall clock time and date at job start Tue Mar 31 2020 06:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46502 * 109.47149 * 2 1 4 4 C 1.37098 * 120.00137 * 279.19908 * 3 2 1 5 5 H 1.08006 * 119.99523 * 132.67678 * 4 3 2 6 6 C 1.38947 * 120.00128 * 312.68260 * 4 3 2 7 7 N 1.31415 * 119.99924 * 167.45444 * 6 4 3 8 8 Si 1.86796 * 119.99950 * 347.45289 * 6 4 3 9 9 H 1.48494 * 109.47424 * 88.47760 * 8 6 4 10 10 H 1.48503 * 109.47026 * 208.47862 * 8 6 4 11 11 H 1.48500 * 109.46963 * 328.47772 * 8 6 4 12 12 C 1.34776 * 120.00052 * 99.20251 * 3 2 1 13 13 O 1.21296 * 120.00089 * 181.53574 * 12 3 2 14 14 C 1.50707 * 119.99857 * 1.53196 * 12 3 2 15 15 N 1.46505 * 109.46780 * 314.04453 * 14 12 3 16 16 C 1.34774 * 119.99889 * 293.36753 * 15 14 12 17 17 C 1.50699 * 119.99936 * 183.62719 * 16 15 14 18 18 O 1.21284 * 120.00212 * 3.62296 * 16 15 14 19 19 C 1.52998 * 109.46831 * 194.04707 * 14 12 3 20 20 C 1.53006 * 109.46725 * 180.02562 * 19 14 12 21 21 C 1.52995 * 109.47345 * 59.99702 * 20 19 14 22 22 C 1.53003 * 109.47207 * 300.00060 * 21 20 19 23 23 C 1.52995 * 109.47144 * 74.04467 * 14 12 3 24 24 H 1.08999 * 109.46755 * 70.30809 * 1 2 3 25 25 H 1.08992 * 109.47214 * 190.31390 * 1 2 3 26 26 H 1.09000 * 109.46581 * 310.31157 * 1 2 3 27 27 H 1.08999 * 109.46809 * 240.00333 * 2 1 3 28 28 H 1.08998 * 109.46948 * 120.00033 * 2 1 3 29 29 H 0.97003 * 119.99932 * 179.97438 * 7 6 4 30 30 H 0.97003 * 119.99629 * 113.37605 * 15 14 12 31 31 H 1.09002 * 109.47385 * 89.99587 * 17 16 15 32 32 H 1.08991 * 109.47729 * 210.00189 * 17 16 15 33 33 H 1.09005 * 109.47108 * 330.00491 * 17 16 15 34 34 H 1.09001 * 109.47622 * 60.00100 * 19 14 12 35 35 H 1.09001 * 109.47109 * 299.99305 * 19 14 12 36 36 H 1.09001 * 109.47136 * 299.99393 * 20 19 14 37 37 H 1.09005 * 109.46917 * 179.97438 * 20 19 14 38 38 H 1.09001 * 109.47256 * 59.99765 * 21 20 19 39 39 H 1.09000 * 109.47337 * 179.97438 * 21 20 19 40 40 H 1.09001 * 109.47376 * 179.97438 * 22 21 20 41 41 H 1.09001 * 109.46772 * 300.00001 * 22 21 20 42 42 H 1.09001 * 109.47256 * 59.99772 * 23 14 12 43 43 H 1.09005 * 109.47137 * 299.99901 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0679 2.0908 -1.1720 5 1 1.6783 3.0974 -1.2107 6 6 2.6193 1.5150 -2.3100 7 7 2.4498 2.0841 -3.4824 8 14 3.6017 -0.0679 -2.1735 9 1 2.6857 -1.2307 -2.2918 10 1 4.6106 -0.1198 -3.2619 11 1 4.2897 -0.1116 -0.8582 12 6 2.4190 1.9544 1.1522 13 8 2.7970 3.1069 1.1569 14 6 2.3972 1.1632 2.4347 15 7 1.1231 0.4486 2.5459 16 6 -0.0246 1.1376 2.7024 17 6 -1.3247 0.4013 2.8988 18 8 -0.0111 2.3502 2.6853 19 6 2.5541 2.1140 3.6231 20 6 2.5325 1.3108 4.9251 21 6 3.6842 0.3036 4.9222 22 6 3.5273 -0.6471 3.7337 23 6 3.5486 0.1557 2.4321 24 1 -0.3633 0.3463 -0.9676 25 1 -0.3633 -1.0110 0.1840 26 1 -0.3632 0.6649 0.7837 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.8350 1.6823 -4.2768 30 1 1.1056 -0.5205 2.5071 31 1 -1.4918 0.2364 3.9632 32 1 -2.1431 0.9936 2.4900 33 1 -1.2795 -0.5592 2.3852 34 1 1.7338 2.8318 3.6250 35 1 3.5020 2.6457 3.5403 36 1 1.5848 0.7787 5.0082 37 1 2.6448 1.9881 5.7718 38 1 4.6320 0.8357 4.8391 39 1 3.6692 -0.2683 5.8500 40 1 4.3481 -1.3644 3.7314 41 1 2.5796 -1.1792 3.8168 42 1 4.4965 0.6875 2.3493 43 1 3.4367 -0.5216 1.5854 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330389609.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:37 Heat of formation + Delta-G solvation = -51.732526 kcal Electronic energy + Delta-G solvation = -25277.015744 eV Core-core repulsion = 21937.105243 eV Total energy + Delta-G solvation = -3339.910500 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.98490 -38.15127 -37.24313 -35.29758 -33.63429 -32.02037 -30.95173 -30.67082 -29.49303 -28.40278 -25.29779 -23.24359 -22.58853 -22.33145 -20.77103 -19.58691 -18.72733 -16.90038 -16.82408 -16.24515 -16.12920 -15.35786 -15.04648 -14.68139 -13.98860 -13.86370 -13.66707 -13.38981 -13.20571 -12.91672 -12.63050 -12.56224 -12.38434 -12.19869 -12.07016 -11.88162 -11.86152 -11.56091 -11.30813 -11.10497 -11.00008 -10.76043 -10.54851 -10.29885 -10.13958 -10.01829 -9.81817 -9.36627 -9.12528 -8.90401 -8.05206 -7.55579 -6.28919 -3.99451 2.92987 3.02411 3.19396 3.23149 3.30670 3.90614 4.18727 4.40585 4.80761 4.82737 4.87848 4.99811 5.07250 5.26132 5.31785 5.38537 5.43751 5.45814 5.55970 5.57909 5.60140 5.70588 5.81065 5.87561 5.91191 5.95818 6.05015 6.08913 6.15220 6.22829 6.26034 6.36827 6.43207 6.45924 6.74394 6.80995 6.85539 7.65776 7.76963 8.43131 8.54913 8.61669 9.05473 9.37808 9.87017 10.83164 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018736 B = 0.008170 C = 0.007226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.076382 B = 3426.548107 C = 3873.994179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.084 3.916 3 N -0.465 5.465 4 C -0.306 4.306 5 H 0.098 0.902 6 C 0.060 3.940 7 N -0.875 5.875 8 Si 0.884 3.116 9 H -0.274 1.274 10 H -0.290 1.290 11 H -0.265 1.265 12 C 0.481 3.519 13 O -0.548 6.548 14 C 0.167 3.833 15 N -0.720 5.720 16 C 0.510 3.490 17 C -0.174 4.174 18 O -0.525 6.525 19 C -0.116 4.116 20 C -0.113 4.113 21 C -0.119 4.119 22 C -0.115 4.115 23 C -0.126 4.126 24 H 0.064 0.936 25 H 0.049 0.951 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.272 0.728 30 H 0.397 0.603 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.065 0.935 41 H 0.061 0.939 42 H 0.084 0.916 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.243 -12.292 14.957 19.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.040 4.040 3 N -0.188 5.188 4 C -0.434 4.434 5 H 0.115 0.885 6 C -0.145 4.145 7 N -0.512 5.512 8 Si 0.713 3.287 9 H -0.202 1.202 10 H -0.216 1.216 11 H -0.190 1.190 12 C 0.267 3.733 13 O -0.427 6.427 14 C 0.078 3.922 15 N -0.376 5.376 16 C 0.297 3.703 17 C -0.234 4.234 18 O -0.401 6.401 19 C -0.155 4.155 20 C -0.151 4.151 21 C -0.157 4.157 22 C -0.152 4.152 23 C -0.164 4.164 24 H 0.084 0.916 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.233 0.767 31 H 0.106 0.894 32 H 0.110 0.890 33 H 0.097 0.903 34 H 0.112 0.888 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.102 0.898 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.001 -10.786 14.721 18.359 hybrid contribution 0.449 -1.490 -0.355 1.596 sum -1.552 -12.275 14.366 18.960 Atomic orbital electron populations 1.22377 0.96652 0.99968 1.03472 1.22012 0.94805 0.86541 1.00627 1.43593 1.56684 1.11318 1.07212 1.18976 1.38975 1.00800 0.84630 0.88454 1.25464 0.95822 0.98068 0.95121 1.69686 1.43058 1.40299 0.98133 0.86864 0.80402 0.83087 0.78371 1.20168 1.21650 1.18968 1.20437 0.80167 0.88064 0.84660 1.90559 1.49108 1.17355 1.85629 1.20600 0.83441 0.92686 0.95489 1.46433 1.06263 1.09687 1.75252 1.20509 0.85480 0.88372 0.75894 1.22008 0.95732 1.01761 1.03889 1.90763 1.86548 1.13914 1.48897 1.21731 1.04680 0.97776 0.91284 1.21497 0.98226 0.97694 0.97675 1.21558 0.99228 0.97382 0.97507 1.21508 1.01712 0.97702 0.94297 1.21929 0.98393 0.97761 0.98339 0.91642 0.93198 0.92168 0.92180 0.91577 0.91772 0.76716 0.89384 0.88993 0.90253 0.88795 0.90683 0.92372 0.92198 0.91882 0.92321 0.91657 0.91992 0.89786 0.90701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.85 8.97 37.16 0.33 -2.52 16 2 C 0.08 1.64 4.33 -4.04 -0.02 1.62 16 3 N -0.47 -11.46 2.06 -114.80 -0.24 -11.69 16 4 C -0.31 -8.97 9.17 -14.93 -0.14 -9.11 16 5 H 0.10 3.28 8.06 -52.48 -0.42 2.86 16 6 C 0.06 1.71 5.43 -17.47 -0.09 1.61 16 7 N -0.87 -26.10 13.96 55.50 0.77 -25.33 16 8 Si 0.88 20.86 25.10 -169.99 -4.27 16.59 16 9 H -0.27 -5.96 6.55 56.52 0.37 -5.59 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 12 C 0.48 11.65 5.56 -10.98 -0.06 11.59 16 13 O -0.55 -15.82 15.95 5.54 0.09 -15.73 16 14 C 0.17 2.93 0.25 -132.97 -0.03 2.90 16 15 N -0.72 -10.33 1.57 -48.68 -0.08 -10.40 16 16 C 0.51 8.00 4.52 -10.99 -0.05 7.95 16 17 C -0.17 -1.83 9.40 36.00 0.34 -1.49 16 18 O -0.53 -11.11 14.23 5.55 0.08 -11.03 16 19 C -0.12 -2.00 3.81 -26.73 -0.10 -2.11 16 20 C -0.11 -1.43 5.77 -26.73 -0.15 -1.58 16 21 C -0.12 -1.27 5.92 -26.73 -0.16 -1.43 16 22 C -0.11 -1.21 5.75 -26.76 -0.15 -1.37 16 23 C -0.13 -1.85 4.48 -26.76 -0.12 -1.97 16 24 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 1.04 3.50 -51.93 -0.18 0.86 16 27 H 0.06 1.25 3.27 -51.93 -0.17 1.08 16 28 H 0.07 1.05 2.97 -51.93 -0.15 0.90 16 29 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.40 4.31 6.34 -40.82 -0.26 4.05 16 31 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.08 0.64 7.69 -51.93 -0.40 0.24 16 34 H 0.09 1.92 5.83 -51.93 -0.30 1.61 16 35 H 0.07 1.37 7.95 -51.93 -0.41 0.96 16 36 H 0.06 0.70 7.42 -51.93 -0.39 0.31 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.56 7.00 -51.93 -0.36 0.20 16 42 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.07 1.11 6.02 -51.93 -0.31 0.80 16 LS Contribution 314.62 15.07 4.74 4.74 Total: -1.00 -36.12 314.62 -5.64 -41.77 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -6.33 Total: 6.99 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: -0.41 Total: 4.09 kcal Atomic # 7 Polarization: -47.88 SS G_CDS: 0.46 Total: -47.42 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: 0.17 Total: -26.77 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.27 Total: 16.59 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -36.12 -5.64 -41.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330389609.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.967 kcal (2) G-P(sol) polarization free energy of solvation -36.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds