Wall clock time and date at job start Tue Mar 31 2020 05:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46888 * 2 1 4 4 C 1.50700 * 109.47103 * 240.00693 * 2 1 3 5 5 H 1.08002 * 119.99798 * 274.99866 * 4 2 1 6 6 C 1.37879 * 120.00375 * 94.99770 * 4 2 1 7 7 N 1.31516 * 119.99879 * 184.91535 * 6 4 2 8 8 Si 1.86800 * 119.99951 * 4.91619 * 6 4 2 9 9 H 1.48497 * 109.47060 * 84.83383 * 8 6 4 10 10 H 1.48492 * 109.47055 * 204.83496 * 8 6 4 11 11 H 1.48501 * 109.46892 * 324.83459 * 8 6 4 12 12 N 1.46496 * 109.47778 * 120.00234 * 2 1 3 13 13 C 1.34778 * 119.99885 * 275.00624 * 12 2 1 14 14 O 1.21275 * 120.00155 * 359.97438 * 13 12 2 15 15 C 1.50698 * 119.99867 * 179.97438 * 13 12 2 16 16 H 1.08994 * 109.47181 * 299.99783 * 15 13 12 17 17 C 1.53006 * 109.47229 * 59.99935 * 15 13 12 18 18 N 1.46497 * 109.47066 * 179.97438 * 15 13 12 19 19 C 1.34778 * 120.00158 * 155.00089 * 18 15 13 20 20 O 1.21284 * 119.99792 * 0.02562 * 19 18 15 21 21 C 1.50702 * 120.00352 * 179.97438 * 19 18 15 22 22 C 1.55232 * 110.46962 * 294.81040 * 21 19 18 23 23 C 1.54884 * 102.58873 * 203.39331 * 22 21 19 24 24 C 1.54268 * 104.31419 * 37.93172 * 23 22 21 25 25 C 1.53872 * 106.59643 * 336.32513 * 24 23 22 26 26 H 1.08999 * 109.46711 * 295.03080 * 1 2 3 27 27 H 1.08993 * 109.47729 * 55.03374 * 1 2 3 28 28 H 1.09002 * 109.46703 * 175.03748 * 1 2 3 29 29 H 0.96997 * 119.99924 * 179.97438 * 7 6 4 30 30 H 0.97003 * 120.00078 * 94.99418 * 12 2 1 31 31 H 1.08999 * 109.47207 * 59.99381 * 17 15 13 32 32 H 1.08993 * 109.47460 * 179.97438 * 17 15 13 33 33 H 1.09004 * 109.46693 * 299.99904 * 17 15 13 34 34 H 0.97008 * 120.00206 * 335.00032 * 18 15 13 35 35 H 1.09005 * 110.43267 * 57.46099 * 21 19 18 36 36 H 1.09000 * 110.89998 * 85.09812 * 22 21 19 37 37 H 1.09006 * 110.76453 * 321.62190 * 22 21 19 38 38 H 1.09001 * 110.48711 * 279.18458 * 23 22 21 39 39 H 1.09001 * 110.48893 * 156.67743 * 23 22 21 40 40 H 1.08994 * 110.03210 * 95.60700 * 24 23 22 41 41 H 1.09000 * 110.02905 * 216.99543 * 24 23 22 42 42 H 1.08999 * 110.03389 * 119.28343 * 25 24 23 43 43 H 1.09008 * 110.03418 * 240.66850 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.1355 -1.7853 -1.2292 6 6 2.3602 0.0123 -2.3581 7 7 2.7059 -0.6129 -3.4623 8 14 2.3135 1.8793 -2.3174 9 1 3.5990 2.3950 -1.7822 10 1 2.1056 2.3993 -3.6927 11 1 1.1986 2.3276 -1.4449 12 7 2.0185 -0.6906 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8590 1.1585 2.4115 15 6 2.6491 -0.7289 3.5876 16 1 1.9763 -1.5507 3.8324 17 6 4.0516 -1.2797 3.3220 18 7 2.6990 0.2126 4.7089 19 6 2.6195 -0.2426 5.9750 20 8 2.5072 -1.4316 6.1860 21 6 2.6714 0.7258 7.1286 22 6 4.0580 1.4210 7.1918 23 6 4.1507 1.8547 8.6758 24 6 3.5035 0.6908 9.4545 25 6 2.5630 -0.0270 8.4707 26 1 -0.3633 0.4348 0.9312 27 1 -0.3634 0.5889 -0.8421 28 1 -0.3633 -1.0239 -0.0889 29 1 2.9362 -0.1046 -4.2557 30 1 2.2491 -1.6318 1.1525 31 1 4.7244 -0.4579 3.0771 32 1 4.4149 -1.7932 4.2121 33 1 4.0148 -1.9801 2.4876 34 1 2.7892 1.1636 4.5402 35 1 1.8756 1.4654 7.0406 36 1 4.0882 2.2888 6.5331 37 1 4.8540 0.7187 6.9442 38 1 3.5952 2.7783 8.8388 39 1 5.1921 1.9797 8.9724 40 1 4.2727 0.0027 9.8051 41 1 2.9354 1.0778 10.3004 42 1 2.8758 -1.0634 8.3438 43 1 1.5378 0.0110 8.8391 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330390640.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:54 Heat of formation + Delta-G solvation = -102.370522 kcal Electronic energy + Delta-G solvation = -22523.244264 eV Core-core repulsion = 19181.137936 eV Total energy + Delta-G solvation = -3342.106329 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.39535 -39.12895 -37.28599 -35.28147 -34.60583 -32.53293 -31.34283 -29.63646 -28.93629 -28.63484 -25.39235 -24.50934 -22.30011 -20.92131 -20.46700 -19.89135 -19.57657 -18.06777 -17.10213 -16.49542 -15.89852 -15.67948 -15.37245 -14.88144 -14.73223 -14.37467 -13.74691 -13.62452 -13.44973 -13.28359 -12.69178 -12.53285 -12.43825 -12.23984 -12.00673 -11.66891 -11.52826 -11.40420 -11.36452 -11.35423 -11.16174 -11.02571 -10.87066 -10.65628 -10.64080 -9.93395 -9.79932 -9.39819 -9.26650 -9.02069 -8.75230 -8.20806 -6.28456 -4.32674 2.59563 3.02210 3.10857 3.22403 3.29835 3.36133 3.92427 4.24394 4.27350 4.32637 4.51905 4.90822 5.02478 5.11599 5.17437 5.20319 5.21731 5.27056 5.29579 5.33277 5.40070 5.58608 5.67457 5.69783 5.81176 5.86956 5.91761 6.04615 6.13403 6.19706 6.27375 6.41566 6.46961 6.61966 6.85921 7.11695 7.28820 7.45730 7.53533 8.02903 8.21211 8.47260 8.70602 8.81410 9.32866 10.83180 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.032641 B = 0.003423 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.616836 B = 8178.027546 C = 8409.699775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.231 3.769 3 H 0.051 0.949 4 C -0.532 4.532 5 H 0.080 0.920 6 C 0.081 3.919 7 N -0.887 5.887 8 Si 0.875 3.125 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.261 1.261 12 N -0.695 5.695 13 C 0.499 3.501 14 O -0.558 6.558 15 C 0.121 3.879 16 H 0.109 0.891 17 C -0.157 4.157 18 N -0.708 5.708 19 C 0.522 3.478 20 O -0.545 6.545 21 C -0.114 4.114 22 C -0.114 4.114 23 C -0.124 4.124 24 C -0.125 4.125 25 C -0.112 4.112 26 H 0.028 0.972 27 H 0.053 0.947 28 H 0.048 0.952 29 H 0.268 0.732 30 H 0.396 0.604 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.409 0.591 35 H 0.101 0.899 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.084 0.916 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.509 3.053 21.283 21.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.129 3.871 3 H 0.069 0.931 4 C -0.570 4.570 5 H 0.098 0.902 6 C -0.123 4.123 7 N -0.523 5.523 8 Si 0.702 3.298 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.185 1.185 12 N -0.343 5.343 13 C 0.282 3.718 14 O -0.438 6.438 15 C 0.012 3.988 16 H 0.127 0.873 17 C -0.216 4.216 18 N -0.361 5.361 19 C 0.309 3.691 20 O -0.422 6.422 21 C -0.135 4.135 22 C -0.152 4.152 23 C -0.161 4.161 24 C -0.162 4.162 25 C -0.150 4.150 26 H 0.047 0.953 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.230 0.770 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.246 0.754 35 H 0.119 0.881 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.103 0.897 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.263 3.052 21.207 21.545 hybrid contribution 0.102 0.952 -0.380 1.030 sum 2.365 4.004 20.827 21.340 Atomic orbital electron populations 1.22223 0.98482 1.00709 0.99277 1.19166 0.90990 0.94328 0.82631 0.93145 1.21001 1.45380 0.95687 0.94886 0.90226 1.24947 0.93576 0.98659 0.95149 1.69880 1.44515 1.36243 1.01688 0.86884 0.79730 0.85797 0.77423 1.19861 1.21139 1.18519 1.46631 1.64140 1.14042 1.09532 1.20488 0.78640 0.87629 0.84996 1.90629 1.52061 1.16057 1.85057 1.20851 0.99225 0.92876 0.85805 0.87288 1.22103 0.94923 1.01714 1.02839 1.45794 1.74142 1.11470 1.04661 1.20538 0.75353 0.89500 0.83751 1.90669 1.49712 1.16988 1.84856 1.22228 1.00082 0.97518 0.93695 1.22556 0.95215 1.00084 0.97376 1.22350 1.00919 0.98345 0.94495 1.22149 0.98701 0.97288 0.98085 1.22071 1.00015 1.00733 0.92175 0.95261 0.92816 0.93303 0.92170 0.77047 0.91832 0.91364 0.90527 0.75381 0.88088 0.90646 0.90862 0.91365 0.91417 0.91717 0.91776 0.89719 0.91534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 9.47 37.16 0.35 -2.84 16 2 C 0.23 5.34 2.22 -69.09 -0.15 5.19 16 3 H 0.05 1.27 4.73 -51.93 -0.25 1.02 16 4 C -0.53 -13.94 9.05 -34.44 -0.31 -14.25 16 5 H 0.08 2.20 8.06 -52.49 -0.42 1.78 16 6 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 7 N -0.89 -25.69 13.96 55.43 0.77 -24.92 16 8 Si 0.88 21.11 26.99 -169.99 -4.59 16.52 16 9 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.26 -6.20 6.82 56.52 0.39 -5.81 16 12 N -0.70 -13.43 4.96 -54.94 -0.27 -13.70 16 13 C 0.50 9.11 7.19 -10.99 -0.08 9.03 16 14 O -0.56 -11.82 15.50 5.56 0.09 -11.73 16 15 C 0.12 1.77 2.99 -69.08 -0.21 1.56 16 16 H 0.11 1.60 7.58 -51.93 -0.39 1.21 16 17 C -0.16 -2.04 9.38 37.16 0.35 -1.69 16 18 N -0.71 -9.48 4.94 -54.93 -0.27 -9.75 16 19 C 0.52 6.85 7.10 -10.98 -0.08 6.77 16 20 O -0.54 -8.76 15.08 5.55 0.08 -8.68 16 21 C -0.11 -1.12 3.26 -89.93 -0.29 -1.41 16 22 C -0.11 -0.95 6.34 -24.56 -0.16 -1.10 16 23 C -0.12 -0.86 6.82 -25.07 -0.17 -1.03 16 24 C -0.12 -0.93 6.80 -25.61 -0.17 -1.10 16 25 C -0.11 -1.06 6.19 -25.61 -0.16 -1.21 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.40 6.75 8.01 -40.82 -0.33 6.43 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.08 0.94 7.56 -51.93 -0.39 0.55 16 34 H 0.41 5.27 7.79 -40.82 -0.32 4.95 16 35 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.66 8.06 -51.93 -0.42 0.24 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.08 0.96 6.85 -51.93 -0.36 0.60 16 43 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 LS Contribution 349.36 15.07 5.26 5.26 Total: -1.00 -31.24 349.36 -7.20 -38.43 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -7.10 Total: 8.52 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -1.18 Total: 0.04 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: 0.23 Total: -48.38 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: 0.17 Total: -20.41 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.59 Total: 16.52 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.24 -7.20 -38.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330390640.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.936 kcal (2) G-P(sol) polarization free energy of solvation -31.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds