Wall clock time and date at job start Tue Mar 31 2020 05:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46844 * 2 1 4 4 C 1.50708 * 109.46907 * 119.99456 * 2 1 3 5 5 H 1.07996 * 119.99911 * 120.00343 * 4 2 1 6 6 C 1.37879 * 120.00080 * 300.00055 * 4 2 1 7 7 N 1.31515 * 119.99655 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00040 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47281 * 89.99980 * 8 6 4 10 10 H 1.48490 * 109.47329 * 210.00142 * 8 6 4 11 11 H 1.48500 * 109.47018 * 330.00432 * 8 6 4 12 12 N 1.46494 * 109.47398 * 239.99625 * 2 1 3 13 13 C 1.34773 * 120.00120 * 85.00145 * 12 2 1 14 14 O 1.21283 * 119.99810 * 359.97438 * 13 12 2 15 15 C 1.50705 * 120.00202 * 180.02562 * 13 12 2 16 16 H 1.08992 * 109.47086 * 59.99193 * 15 13 12 17 17 C 1.53000 * 109.46744 * 299.99745 * 15 13 12 18 18 N 1.46499 * 109.47079 * 180.02562 * 15 13 12 19 19 C 1.34775 * 119.99299 * 204.99843 * 18 15 13 20 20 O 1.21276 * 120.00699 * 359.97438 * 19 18 15 21 21 C 1.50709 * 119.99599 * 179.97438 * 19 18 15 22 22 C 1.55238 * 110.58096 * 294.87565 * 21 19 18 23 23 C 1.54894 * 102.58338 * 203.33573 * 22 21 19 24 24 C 1.54266 * 104.31305 * 37.93170 * 23 22 21 25 25 C 1.53869 * 106.60031 * 336.32486 * 24 23 22 26 26 H 1.09002 * 109.47103 * 300.00544 * 1 2 3 27 27 H 1.08998 * 109.46911 * 60.00335 * 1 2 3 28 28 H 1.08996 * 109.46955 * 180.02562 * 1 2 3 29 29 H 0.97003 * 119.99379 * 179.97438 * 7 6 4 30 30 H 0.97008 * 119.99824 * 265.00036 * 12 2 1 31 31 H 1.08993 * 109.47204 * 180.02562 * 17 15 13 32 32 H 1.09006 * 109.47290 * 299.99957 * 17 15 13 33 33 H 1.09000 * 109.47261 * 59.99990 * 17 15 13 34 34 H 0.96998 * 120.00025 * 24.99460 * 18 15 13 35 35 H 1.09006 * 110.43428 * 57.45967 * 21 19 18 36 36 H 1.08996 * 110.89448 * 85.05138 * 22 21 19 37 37 H 1.08993 * 110.76342 * 321.56803 * 22 21 19 38 38 H 1.09002 * 110.48891 * 279.18596 * 23 22 21 39 39 H 1.08998 * 110.48494 * 156.67683 * 23 22 21 40 40 H 1.09001 * 110.03084 * 95.60669 * 24 23 22 41 41 H 1.08996 * 110.03108 * 216.98559 * 24 23 22 42 42 H 1.08999 * 110.04012 * 119.28327 * 25 24 23 43 43 H 1.09006 * 110.02998 * 240.67078 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8298 2.6033 8 14 2.3212 -1.1200 4.0081 9 1 3.6295 -0.5456 4.4126 10 1 1.3430 -0.9489 5.1121 11 1 2.4857 -2.5659 3.7122 12 7 2.0184 -0.6906 -1.1961 13 6 2.1472 -0.0184 -2.3570 14 8 1.8583 1.1582 -2.4117 15 6 2.6491 -0.7290 -3.5876 16 1 1.9763 -1.5508 -3.8324 17 6 4.0515 -1.2799 -3.3220 18 7 2.6991 0.2125 -4.7089 19 6 2.6196 -0.2428 -5.9750 20 8 2.5072 -1.4318 -6.1860 21 6 2.6705 0.7257 -7.1285 22 6 1.4298 1.6586 -7.1129 23 6 1.3283 2.1100 -8.5912 24 6 1.7089 0.8531 -9.4006 25 6 2.5621 -0.0270 -8.4707 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 0.7081 1.1611 3.4843 30 1 2.2491 -1.6319 -1.1524 31 1 4.4147 -1.7935 -4.2121 32 1 4.7244 -0.4581 -3.0772 33 1 4.0147 -1.9803 -2.4876 34 1 2.7893 1.1634 -4.5401 35 1 3.5887 1.3120 -7.0930 36 1 1.5950 2.5143 -6.4583 37 1 0.5370 1.1092 -6.8146 38 1 2.0298 2.9198 -8.7918 39 1 0.3105 2.4213 -8.8259 40 1 0.8092 0.3160 -9.7012 41 1 2.2858 1.1365 -10.2809 42 1 2.0767 -0.9912 -8.3198 43 1 3.5538 -0.1715 -8.8996 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330390641.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:56 Heat of formation + Delta-G solvation = -102.190205 kcal Electronic energy + Delta-G solvation = -22455.466863 eV Core-core repulsion = 19113.368354 eV Total energy + Delta-G solvation = -3342.098509 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.33367 -39.00522 -37.22787 -35.18013 -34.52831 -32.57531 -31.13082 -29.19764 -28.83820 -28.35338 -25.31623 -24.47416 -22.24640 -20.92146 -20.50585 -19.85521 -19.39851 -17.99531 -16.89622 -16.14633 -15.90417 -15.50674 -15.28048 -14.89773 -14.64400 -14.24861 -13.84439 -13.55948 -13.40236 -13.23468 -12.58610 -12.29431 -12.19164 -12.10679 -11.79409 -11.47874 -11.42680 -11.34309 -11.27777 -11.12811 -11.00700 -10.95974 -10.79482 -10.61640 -10.35137 -10.27682 -9.75500 -9.30984 -9.10716 -8.92397 -8.59702 -8.01585 -6.16622 -4.26166 2.63588 3.09293 3.21775 3.23237 3.29223 3.31249 4.02384 4.29764 4.33498 4.38446 4.57850 4.97820 5.14831 5.15748 5.19152 5.22789 5.27355 5.31045 5.36592 5.38135 5.45572 5.67004 5.71543 5.73155 5.85421 5.91399 5.97888 6.10234 6.17356 6.20451 6.46719 6.77311 6.90832 7.09220 7.35331 7.47772 7.58355 7.63840 7.84940 8.09450 8.24510 8.55865 8.70536 8.98353 9.41272 10.89345 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.037910 B = 0.003189 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.417289 B = 8778.765218 C = 9237.379222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.265 3.735 3 H 0.049 0.951 4 C -0.535 4.535 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.701 5.701 13 C 0.499 3.501 14 O -0.553 6.553 15 C 0.120 3.880 16 H 0.108 0.892 17 C -0.156 4.156 18 N -0.707 5.707 19 C 0.522 3.478 20 O -0.546 6.546 21 C -0.113 4.113 22 C -0.115 4.115 23 C -0.123 4.123 24 C -0.125 4.125 25 C -0.112 4.112 26 H 0.091 0.909 27 H 0.014 0.986 28 H 0.027 0.973 29 H 0.265 0.735 30 H 0.391 0.609 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.410 0.590 35 H 0.100 0.900 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.084 0.916 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.577 -0.159 -18.756 19.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.163 3.837 3 H 0.067 0.933 4 C -0.573 4.573 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.348 5.348 13 C 0.283 3.717 14 O -0.433 6.433 15 C 0.011 3.989 16 H 0.126 0.874 17 C -0.215 4.215 18 N -0.360 5.360 19 C 0.308 3.692 20 O -0.424 6.424 21 C -0.135 4.135 22 C -0.153 4.153 23 C -0.161 4.161 24 C -0.162 4.162 25 C -0.150 4.150 26 H 0.109 0.891 27 H 0.033 0.967 28 H 0.046 0.954 29 H 0.075 0.925 30 H 0.224 0.776 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.247 0.753 35 H 0.118 0.882 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.102 0.898 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.185 -0.045 -18.741 19.010 hybrid contribution 0.458 -0.441 1.091 1.263 sum 3.642 -0.485 -17.649 18.028 Atomic orbital electron populations 1.22086 0.98370 0.99237 1.00948 1.18784 0.91086 0.93980 0.79828 0.93274 1.21209 1.32562 1.13302 0.90257 0.91988 1.24890 0.94753 0.94960 0.99095 1.69903 1.35724 1.22482 1.23950 0.86432 0.78597 0.79866 0.82118 1.20545 1.21050 1.19804 1.46499 1.64361 1.13699 1.10254 1.20360 0.78886 0.87620 0.84879 1.90643 1.51735 1.15991 1.84905 1.20854 0.99060 0.92904 0.86035 0.87441 1.22091 0.95089 1.01610 1.02687 1.45786 1.74039 1.11492 1.04647 1.20539 0.75374 0.89452 0.83789 1.90662 1.49816 1.17011 1.84886 1.22221 1.00969 0.96613 0.93659 1.22561 0.96811 0.98532 0.97363 1.22353 1.01634 0.97647 0.94468 1.22150 0.99803 0.96122 0.98163 1.22066 1.00630 0.99767 0.92490 0.89050 0.96669 0.95373 0.92531 0.77632 0.91437 0.91853 0.90740 0.75342 0.88199 0.90477 0.90829 0.91396 0.91393 0.91727 0.91811 0.89756 0.91590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 9.26 37.16 0.34 -3.29 16 2 C 0.26 6.58 2.56 -69.08 -0.18 6.40 16 3 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 4 C -0.53 -13.89 8.73 -34.44 -0.30 -14.19 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -24.53 11.32 55.43 0.63 -23.90 16 8 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 9 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 12 N -0.70 -14.10 4.96 -54.93 -0.27 -14.37 16 13 C 0.50 9.52 7.19 -10.98 -0.08 9.44 16 14 O -0.55 -12.33 15.50 5.56 0.09 -12.25 16 15 C 0.12 1.82 2.99 -69.08 -0.21 1.61 16 16 H 0.11 1.64 7.58 -51.93 -0.39 1.25 16 17 C -0.16 -2.04 9.38 37.16 0.35 -1.69 16 18 N -0.71 -9.81 4.94 -54.93 -0.27 -10.08 16 19 C 0.52 7.06 7.10 -10.98 -0.08 6.98 16 20 O -0.55 -9.00 15.09 5.56 0.08 -8.91 16 21 C -0.11 -1.15 3.25 -89.92 -0.29 -1.44 16 22 C -0.11 -1.08 6.34 -24.55 -0.16 -1.24 16 23 C -0.12 -0.96 6.82 -25.07 -0.17 -1.13 16 24 C -0.12 -0.99 6.80 -25.62 -0.17 -1.17 16 25 C -0.11 -1.08 6.18 -25.62 -0.16 -1.24 16 26 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 27 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.39 6.84 7.96 -40.82 -0.32 6.51 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.90 7.56 -51.93 -0.39 0.51 16 34 H 0.41 5.49 7.79 -40.82 -0.32 5.17 16 35 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.79 8.06 -51.93 -0.42 0.37 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.08 0.99 6.85 -51.93 -0.36 0.64 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 349.62 15.07 5.27 5.27 Total: -1.00 -30.55 349.62 -7.80 -38.35 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -7.10 Total: 9.85 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -1.19 Total: 0.70 kcal Atomic # 7 Polarization: -48.44 SS G_CDS: 0.08 Total: -48.35 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: 0.17 Total: -21.16 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.55 -7.80 -38.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330390641.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.842 kcal (2) G-P(sol) polarization free energy of solvation -30.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds