Wall clock time and date at job start Tue Mar 31 2020 05:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.47033 * 2 1 4 4 C 1.50704 * 109.46805 * 240.00623 * 2 1 3 5 5 H 1.08005 * 119.99571 * 239.99819 * 4 2 1 6 6 C 1.37875 * 120.00350 * 59.99448 * 4 2 1 7 7 N 1.31512 * 119.99874 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00104 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47392 * 89.99714 * 8 6 4 10 10 H 1.48494 * 109.47441 * 210.00547 * 8 6 4 11 11 H 1.48508 * 109.46992 * 330.00031 * 8 6 4 12 12 N 1.46494 * 109.47289 * 120.00218 * 2 1 3 13 13 C 1.34773 * 120.00120 * 275.00091 * 12 2 1 14 14 O 1.21283 * 119.99810 * 359.97438 * 13 12 2 15 15 C 1.50705 * 120.00202 * 180.02562 * 13 12 2 16 16 H 1.08992 * 109.47086 * 59.99193 * 15 13 12 17 17 C 1.53000 * 109.46744 * 299.99745 * 15 13 12 18 18 N 1.46499 * 109.47079 * 180.02562 * 15 13 12 19 19 C 1.34775 * 119.99299 * 204.99843 * 18 15 13 20 20 O 1.21276 * 120.00699 * 359.97438 * 19 18 15 21 21 C 1.50709 * 119.99599 * 179.97438 * 19 18 15 22 22 C 1.55238 * 110.58096 * 294.87565 * 21 19 18 23 23 C 1.54894 * 102.58338 * 203.33573 * 22 21 19 24 24 C 1.54266 * 104.31305 * 37.93170 * 23 22 21 25 25 C 1.53869 * 106.60031 * 336.32486 * 24 23 22 26 26 H 1.08997 * 109.46629 * 299.99557 * 1 2 3 27 27 H 1.08993 * 109.47088 * 59.99875 * 1 2 3 28 28 H 1.09000 * 109.47033 * 180.02562 * 1 2 3 29 29 H 0.97001 * 120.00194 * 179.97438 * 7 6 4 30 30 H 0.97008 * 119.99824 * 94.99982 * 12 2 1 31 31 H 1.08993 * 109.47204 * 180.02562 * 17 15 13 32 32 H 1.09006 * 109.47290 * 299.99957 * 17 15 13 33 33 H 1.09000 * 109.47261 * 59.99990 * 17 15 13 34 34 H 0.96998 * 120.00025 * 24.99460 * 18 15 13 35 35 H 1.09006 * 110.43428 * 57.45967 * 21 19 18 36 36 H 1.08996 * 110.89448 * 85.05138 * 22 21 19 37 37 H 1.08993 * 110.76342 * 321.56803 * 22 21 19 38 38 H 1.09002 * 110.48891 * 279.18596 * 23 22 21 39 39 H 1.08998 * 110.48494 * 156.67683 * 23 22 21 40 40 H 1.09001 * 110.03084 * 95.60669 * 24 23 22 41 41 H 1.08996 * 110.03108 * 216.98559 * 24 23 22 42 42 H 1.08999 * 110.04012 * 119.28327 * 25 24 23 43 43 H 1.09006 * 110.02998 * 240.67078 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3212 -1.1201 -4.0081 9 1 1.3426 -2.1615 -4.4120 10 1 2.4864 -0.1412 -5.1123 11 1 3.6292 -1.7581 -3.7124 12 7 2.0184 -0.6906 1.1961 13 6 2.1472 -0.0184 2.3571 14 8 1.8591 1.1585 2.4115 15 6 2.6501 -0.7287 3.5874 16 1 3.6493 -1.1205 3.3977 17 6 1.7065 -1.8829 3.9313 18 7 2.6987 0.2125 4.7090 19 6 3.5463 -0.0043 5.7342 20 8 4.2684 -0.9787 5.7285 21 6 3.5967 0.9641 6.8879 22 6 4.1144 2.3492 6.4153 23 6 4.6648 2.9682 7.7242 24 6 5.3153 1.7808 8.4636 25 6 4.6362 0.5066 7.9318 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 0.7093 1.1619 -3.4843 30 1 2.2491 -1.6319 1.1525 31 1 2.0699 -2.3964 4.8214 32 1 0.7071 -1.4911 4.1210 33 1 1.6699 -2.5833 3.0969 34 1 2.1209 0.9916 4.7138 35 1 2.6126 1.0612 7.3466 36 1 3.2999 2.9529 6.0153 37 1 4.9093 2.2338 5.6785 38 1 3.8532 3.3890 8.3180 39 1 5.4090 3.7327 7.5012 40 1 6.3842 1.7500 8.2527 41 1 5.1493 1.8732 9.5369 42 1 5.3755 -0.1427 7.4628 43 1 4.1405 -0.0204 8.7472 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330390643.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:01 Heat of formation + Delta-G solvation = -102.127620 kcal Electronic energy + Delta-G solvation = -22455.111765 eV Core-core repulsion = 19113.015969 eV Total energy + Delta-G solvation = -3342.095796 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.33185 -39.00522 -37.22395 -35.17809 -34.53101 -32.57492 -31.12734 -29.19169 -28.83466 -28.38102 -25.30464 -24.47313 -22.23908 -20.94026 -20.52452 -19.83967 -19.38373 -17.98716 -16.90416 -16.15664 -15.92379 -15.49636 -15.17554 -14.91983 -14.67478 -14.27637 -13.85646 -13.57778 -13.49642 -13.05747 -12.52596 -12.43596 -12.25212 -12.09041 -11.70190 -11.49844 -11.44780 -11.34083 -11.27581 -11.14687 -10.97409 -10.95500 -10.79008 -10.61197 -10.37311 -10.27644 -9.75220 -9.30892 -9.10289 -8.92014 -8.59979 -8.01604 -6.16401 -4.25907 2.63851 3.09643 3.21678 3.23400 3.29674 3.32219 4.02281 4.30163 4.34057 4.38904 4.58261 4.98067 5.14864 5.15781 5.18763 5.22091 5.27749 5.31067 5.36755 5.38439 5.46051 5.67373 5.69879 5.73601 5.84683 5.91321 5.98428 6.10771 6.17765 6.17956 6.46634 6.76430 6.89554 7.08452 7.35190 7.47651 7.58401 7.63946 7.85041 8.09412 8.24784 8.55912 8.70804 8.98450 9.41595 10.89577 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031170 B = 0.003203 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.094103 B = 8739.265706 C = 8916.845226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.049 0.951 4 C -0.535 4.535 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.701 5.701 13 C 0.499 3.501 14 O -0.553 6.553 15 C 0.120 3.880 16 H 0.108 0.892 17 C -0.156 4.156 18 N -0.707 5.707 19 C 0.522 3.478 20 O -0.546 6.546 21 C -0.113 4.113 22 C -0.115 4.115 23 C -0.123 4.123 24 C -0.125 4.125 25 C -0.112 4.112 26 H 0.014 0.986 27 H 0.091 0.909 28 H 0.027 0.973 29 H 0.265 0.735 30 H 0.391 0.609 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.410 0.590 35 H 0.100 0.900 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.084 0.916 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.660 -0.141 18.740 19.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.163 3.837 3 H 0.067 0.933 4 C -0.574 4.574 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.348 5.348 13 C 0.283 3.717 14 O -0.433 6.433 15 C 0.011 3.989 16 H 0.126 0.874 17 C -0.214 4.214 18 N -0.360 5.360 19 C 0.308 3.692 20 O -0.423 6.423 21 C -0.134 4.134 22 C -0.153 4.153 23 C -0.161 4.161 24 C -0.162 4.162 25 C -0.150 4.150 26 H 0.033 0.967 27 H 0.109 0.891 28 H 0.046 0.954 29 H 0.075 0.925 30 H 0.224 0.776 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.246 0.754 35 H 0.118 0.882 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.103 0.897 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.874 0.131 18.571 18.971 hybrid contribution 0.025 -0.557 -0.983 1.130 sum 3.898 -0.426 17.588 18.020 Atomic orbital electron populations 1.22078 0.98321 0.99194 1.00929 1.18786 0.91090 0.93996 0.79835 0.93297 1.21217 1.32576 1.13308 0.90279 0.91987 1.24884 0.94770 0.94924 0.99094 1.69896 1.35854 1.22375 1.23959 0.86433 0.79216 0.79271 0.82108 1.20510 1.21052 1.19800 1.46497 1.64375 1.13681 1.10257 1.20358 0.78960 0.87522 0.84895 1.90643 1.51743 1.15891 1.84995 1.20853 1.01959 0.90155 0.85920 0.87374 1.22087 0.99277 0.97189 1.02880 1.45781 1.41967 1.28260 1.19960 1.20541 0.78999 0.86255 0.83369 1.90664 1.42186 1.30281 1.79197 1.22220 1.01636 0.95062 0.94531 1.22563 1.01174 0.93625 0.97917 1.22352 1.00185 0.97592 0.95970 1.22150 1.00045 0.94354 0.99691 1.22067 0.97962 0.97796 0.97129 0.96679 0.89074 0.95383 0.92530 0.77636 0.91398 0.91931 0.90805 0.75361 0.88218 0.90481 0.90800 0.91407 0.91386 0.91719 0.91816 0.89748 0.91598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 9.26 37.16 0.34 -3.21 16 2 C 0.26 6.57 2.56 -69.08 -0.18 6.40 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.01 16 4 C -0.54 -13.99 8.73 -34.44 -0.30 -14.29 16 5 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.57 11.32 55.43 0.63 -23.95 16 8 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 9 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 12 N -0.70 -14.10 4.96 -54.93 -0.27 -14.38 16 13 C 0.50 9.52 7.19 -10.98 -0.08 9.44 16 14 O -0.55 -12.34 15.50 5.56 0.09 -12.25 16 15 C 0.12 1.81 2.99 -69.08 -0.21 1.60 16 16 H 0.11 1.67 7.58 -51.93 -0.39 1.28 16 17 C -0.16 -2.00 9.38 37.16 0.35 -1.65 16 18 N -0.71 -9.81 4.94 -54.93 -0.27 -10.08 16 19 C 0.52 7.08 7.10 -10.98 -0.08 7.00 16 20 O -0.55 -9.02 15.09 5.56 0.08 -8.94 16 21 C -0.11 -1.15 3.25 -89.92 -0.29 -1.44 16 22 C -0.11 -1.10 6.34 -24.55 -0.16 -1.25 16 23 C -0.12 -0.97 6.82 -25.07 -0.17 -1.14 16 24 C -0.12 -1.00 6.80 -25.62 -0.17 -1.18 16 25 C -0.11 -1.09 6.18 -25.62 -0.16 -1.25 16 26 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 28 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.39 6.84 7.96 -40.82 -0.32 6.51 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.87 7.56 -51.93 -0.39 0.48 16 34 H 0.41 5.47 7.79 -40.82 -0.32 5.15 16 35 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.81 8.06 -51.93 -0.42 0.39 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.08 1.00 6.85 -51.93 -0.36 0.64 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 349.63 15.07 5.27 5.27 Total: -1.00 -30.65 349.63 -7.80 -38.44 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -7.10 Total: 9.71 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -1.19 Total: 0.72 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: 0.08 Total: -48.40 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: 0.17 Total: -21.19 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.65 -7.80 -38.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330390643.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.684 kcal (2) G-P(sol) polarization free energy of solvation -30.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds