Wall clock time and date at job start Tue Mar 31 2020 05:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.47033 * 2 1 4 4 C 1.50704 * 109.46805 * 240.00623 * 2 1 3 5 5 H 1.08005 * 119.99571 * 239.99819 * 4 2 1 6 6 C 1.37875 * 120.00350 * 59.99448 * 4 2 1 7 7 N 1.31512 * 119.99874 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00104 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47392 * 89.99714 * 8 6 4 10 10 H 1.48494 * 109.47441 * 210.00547 * 8 6 4 11 11 H 1.48508 * 109.46992 * 330.00031 * 8 6 4 12 12 N 1.46494 * 109.47289 * 120.00218 * 2 1 3 13 13 C 1.34773 * 120.00120 * 275.00091 * 12 2 1 14 14 O 1.21283 * 119.99810 * 359.97438 * 13 12 2 15 15 C 1.50705 * 120.00202 * 180.02562 * 13 12 2 16 16 H 1.08992 * 109.47086 * 59.99193 * 15 13 12 17 17 C 1.53000 * 109.46744 * 299.99745 * 15 13 12 18 18 N 1.46499 * 109.47079 * 180.02562 * 15 13 12 19 19 C 1.34775 * 119.99299 * 204.99843 * 18 15 13 20 20 O 1.21276 * 120.00699 * 359.97438 * 19 18 15 21 21 C 1.50709 * 119.99599 * 179.97438 * 19 18 15 22 22 C 1.55238 * 110.58096 * 294.87565 * 21 19 18 23 23 C 1.54894 * 102.58338 * 203.33573 * 22 21 19 24 24 C 1.54266 * 104.31305 * 37.93170 * 23 22 21 25 25 C 1.53869 * 106.60031 * 336.32486 * 24 23 22 26 26 H 1.08997 * 109.46629 * 299.99557 * 1 2 3 27 27 H 1.08993 * 109.47088 * 59.99875 * 1 2 3 28 28 H 1.09000 * 109.47033 * 180.02562 * 1 2 3 29 29 H 0.97001 * 120.00194 * 179.97438 * 7 6 4 30 30 H 0.97008 * 119.99824 * 94.99982 * 12 2 1 31 31 H 1.08993 * 109.47204 * 180.02562 * 17 15 13 32 32 H 1.09006 * 109.47290 * 299.99957 * 17 15 13 33 33 H 1.09000 * 109.47261 * 59.99990 * 17 15 13 34 34 H 0.96998 * 120.00025 * 24.99460 * 18 15 13 35 35 H 1.09006 * 110.43428 * 57.45967 * 21 19 18 36 36 H 1.08996 * 110.89448 * 85.05138 * 22 21 19 37 37 H 1.08993 * 110.76342 * 321.56803 * 22 21 19 38 38 H 1.09002 * 110.48891 * 279.18596 * 23 22 21 39 39 H 1.08998 * 110.48494 * 156.67683 * 23 22 21 40 40 H 1.09001 * 110.03084 * 95.60669 * 24 23 22 41 41 H 1.08996 * 110.03108 * 216.98559 * 24 23 22 42 42 H 1.08999 * 110.04012 * 119.28327 * 25 24 23 43 43 H 1.09006 * 110.02998 * 240.67078 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3212 -1.1201 -4.0081 9 1 1.3426 -2.1615 -4.4120 10 1 2.4864 -0.1412 -5.1123 11 1 3.6292 -1.7581 -3.7124 12 7 2.0184 -0.6906 1.1961 13 6 2.1472 -0.0184 2.3571 14 8 1.8591 1.1585 2.4115 15 6 2.6501 -0.7287 3.5874 16 1 3.6493 -1.1205 3.3977 17 6 1.7065 -1.8829 3.9313 18 7 2.6987 0.2125 4.7090 19 6 3.5463 -0.0043 5.7342 20 8 4.2684 -0.9787 5.7285 21 6 3.5967 0.9641 6.8879 22 6 4.1144 2.3492 6.4153 23 6 4.6648 2.9682 7.7242 24 6 5.3153 1.7808 8.4636 25 6 4.6362 0.5066 7.9318 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 0.7093 1.1619 -3.4843 30 1 2.2491 -1.6319 1.1525 31 1 2.0699 -2.3964 4.8214 32 1 0.7071 -1.4911 4.1210 33 1 1.6699 -2.5833 3.0969 34 1 2.1209 0.9916 4.7138 35 1 2.6126 1.0612 7.3466 36 1 3.2999 2.9529 6.0153 37 1 4.9093 2.2338 5.6785 38 1 3.8532 3.3890 8.3180 39 1 5.4090 3.7327 7.5012 40 1 6.3842 1.7500 8.2527 41 1 5.1493 1.8732 9.5369 42 1 5.3755 -0.1427 7.4628 43 1 4.1405 -0.0204 8.7472 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330390643.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:00 Heat of formation + Delta-G solvation = -122.539229 kcal Electronic energy + Delta-G solvation = -22455.996878 eV Core-core repulsion = 19113.015969 eV Total energy + Delta-G solvation = -3342.980909 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.52947 -40.42997 -38.11921 -36.87844 -35.94868 -34.42557 -32.40941 -30.61225 -29.68414 -29.44908 -27.34392 -25.73938 -23.53241 -22.35623 -21.35416 -21.13184 -20.72360 -19.28427 -18.35163 -17.63340 -17.15045 -16.83370 -16.71118 -16.12555 -16.04588 -15.63558 -15.18292 -14.68654 -14.48872 -14.35494 -14.28196 -13.89974 -13.49554 -13.34477 -13.03220 -12.93430 -12.85237 -12.74394 -12.61213 -12.28822 -12.18700 -12.15399 -12.05521 -11.98007 -11.70199 -11.28195 -11.11710 -10.88690 -10.78873 -10.60808 -10.20207 -9.81314 -8.18926 -6.36148 1.44609 1.45426 1.53902 1.56099 1.67225 1.93613 2.37641 2.62543 3.11819 3.50473 3.61170 3.72993 3.84273 4.02028 4.11556 4.25450 4.47911 4.52554 4.59104 4.60996 4.64946 4.75242 4.78627 4.80227 4.92346 4.96423 5.08399 5.11042 5.13703 5.20767 5.26790 5.29609 5.40433 5.43790 5.49632 5.57076 5.66928 5.87500 6.08766 6.47640 6.70777 6.84101 7.16738 7.28391 7.44059 8.87180 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031170 B = 0.003203 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.094103 B = 8739.265706 C = 8916.845226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.271 3.729 3 H 0.001 0.999 4 C -0.549 4.549 5 H 0.073 0.927 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.971 3.029 9 H -0.270 1.270 10 H -0.287 1.287 11 H -0.266 1.266 12 N -0.697 5.697 13 C 0.500 3.500 14 O -0.587 6.587 15 C 0.131 3.869 16 H 0.107 0.893 17 C -0.148 4.148 18 N -0.707 5.707 19 C 0.521 3.479 20 O -0.577 6.577 21 C -0.109 4.109 22 C -0.117 4.117 23 C -0.118 4.118 24 C -0.122 4.122 25 C -0.112 4.112 26 H 0.016 0.984 27 H 0.066 0.934 28 H 0.041 0.959 29 H 0.266 0.734 30 H 0.406 0.594 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.413 0.587 35 H 0.125 0.875 36 H 0.082 0.918 37 H 0.053 0.947 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.081 0.919 42 H 0.058 0.942 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.780 -1.047 19.883 20.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.168 3.832 3 H 0.019 0.981 4 C -0.587 4.587 5 H 0.091 0.909 6 C -0.184 4.184 7 N -0.554 5.554 8 Si 0.795 3.205 9 H -0.196 1.196 10 H -0.213 1.213 11 H -0.190 1.190 12 N -0.346 5.346 13 C 0.285 3.715 14 O -0.469 6.469 15 C 0.022 3.978 16 H 0.125 0.875 17 C -0.206 4.206 18 N -0.359 5.359 19 C 0.309 3.691 20 O -0.457 6.457 21 C -0.130 4.130 22 C -0.155 4.155 23 C -0.156 4.156 24 C -0.159 4.159 25 C -0.150 4.150 26 H 0.035 0.965 27 H 0.085 0.915 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.241 0.759 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.105 0.895 34 H 0.250 0.750 35 H 0.142 0.858 36 H 0.101 0.899 37 H 0.071 0.929 38 H 0.102 0.898 39 H 0.091 0.909 40 H 0.079 0.921 41 H 0.100 0.900 42 H 0.077 0.923 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.999 -0.797 19.741 20.158 hybrid contribution 0.004 -0.236 -1.312 1.333 sum 4.003 -1.033 18.429 18.887 Atomic orbital electron populations 1.21890 0.97923 0.99628 0.99755 1.18381 0.91337 0.91917 0.81553 0.98114 1.21554 1.32689 1.13627 0.90864 0.90937 1.25759 0.94863 0.95550 1.02229 1.70039 1.36937 1.23788 1.24644 0.85365 0.78961 0.78078 0.78065 1.19580 1.21253 1.19000 1.46229 1.64549 1.14329 1.09450 1.21000 0.77828 0.87111 0.85530 1.90625 1.53034 1.17591 1.85612 1.20734 1.02146 0.90543 0.84407 0.87529 1.22053 0.98636 0.96273 1.03673 1.45840 1.42196 1.28224 1.19668 1.21152 0.77926 0.86271 0.83744 1.90650 1.43296 1.31828 1.79934 1.22311 1.03161 0.94253 0.93270 1.22575 1.00801 0.93540 0.98542 1.22354 1.00781 0.97502 0.94939 1.22146 0.99672 0.93399 1.00724 1.22066 0.97385 0.98378 0.97138 0.96532 0.91507 0.93962 0.92511 0.75858 0.90670 0.91624 0.89545 0.74978 0.85759 0.89921 0.92855 0.89750 0.90879 0.92061 0.90004 0.92319 0.90438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.52 9.26 71.98 0.67 -5.85 16 2 C 0.27 13.70 2.56 44.25 0.11 13.81 16 3 H 0.00 0.06 7.58 -2.39 -0.02 0.04 16 4 C -0.55 -28.61 8.73 25.60 0.22 -28.39 16 5 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 6 C 0.02 0.86 5.30 84.65 0.45 1.31 16 7 N -0.92 -51.73 11.32 21.45 0.24 -51.49 16 8 Si 0.97 41.59 29.54 68.60 2.03 43.62 16 9 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 10 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 12 N -0.70 -27.89 4.96 -446.09 -2.21 -30.10 16 13 C 0.50 19.03 7.19 87.66 0.63 19.66 16 14 O -0.59 -26.61 15.50 -3.04 -0.05 -26.66 16 15 C 0.13 3.84 2.99 44.25 0.13 3.97 16 16 H 0.11 3.23 7.58 -2.39 -0.02 3.21 16 17 C -0.15 -3.52 9.38 71.98 0.68 -2.85 16 18 N -0.71 -19.12 4.94 -446.10 -2.20 -21.32 16 19 C 0.52 13.75 7.10 87.66 0.62 14.37 16 20 O -0.58 -18.91 15.09 -3.02 -0.05 -18.96 16 21 C -0.11 -2.06 3.25 -10.34 -0.03 -2.09 16 22 C -0.12 -2.09 6.34 32.01 0.20 -1.89 16 23 C -0.12 -1.60 6.82 31.67 0.22 -1.38 16 24 C -0.12 -1.71 6.80 31.32 0.21 -1.50 16 25 C -0.11 -2.03 6.18 31.32 0.19 -1.83 16 26 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.07 3.61 6.07 -2.39 -0.01 3.59 16 28 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 30 H 0.41 13.73 7.96 -92.70 -0.74 12.99 16 31 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 33 H 0.09 1.84 7.56 -2.39 -0.02 1.82 16 34 H 0.41 10.77 7.79 -92.71 -0.72 10.05 16 35 H 0.12 1.77 8.14 -2.38 -0.02 1.75 16 36 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.05 1.17 8.06 -2.39 -0.02 1.15 16 38 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.06 1.38 6.85 -2.39 -0.02 1.37 16 43 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 Total: -1.00 -66.66 349.63 1.61 -65.04 By element: Atomic # 1 Polarization: 32.98 SS G_CDS: -0.45 Total: 32.53 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: 4.30 Total: 7.35 kcal Atomic # 7 Polarization: -98.74 SS G_CDS: -4.17 Total: -102.91 kcal Atomic # 8 Polarization: -45.53 SS G_CDS: -0.09 Total: -45.62 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Total: -66.66 1.61 -65.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330390643.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.497 kcal (2) G-P(sol) polarization free energy of solvation -66.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds