Wall clock time and date at job start Tue Mar 31 2020 05:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47248 * 2 1 4 4 C 1.50698 * 109.47212 * 240.00187 * 2 1 3 5 5 H 1.07997 * 119.99960 * 240.00180 * 4 2 1 6 6 C 1.37872 * 120.00200 * 59.99706 * 4 2 1 7 7 N 1.31514 * 119.99862 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00344 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47147 * 89.99856 * 8 6 4 10 10 H 1.48497 * 109.47522 * 210.00353 * 8 6 4 11 11 H 1.48498 * 109.46862 * 330.00192 * 8 6 4 12 12 N 1.46499 * 109.47476 * 119.99714 * 2 1 3 13 13 C 1.34777 * 120.00190 * 275.00683 * 12 2 1 14 14 O 1.21275 * 119.99799 * 359.97438 * 13 12 2 15 15 C 1.50698 * 119.99674 * 179.97438 * 13 12 2 16 16 H 1.08999 * 110.88979 * 62.35244 * 15 13 12 17 17 C 1.54631 * 110.97163 * 298.53985 * 15 13 12 18 18 C 1.51281 * 104.31067 * 266.75032 * 17 15 13 19 19 O 1.21284 * 124.93855 * 163.71942 * 18 17 15 20 20 N 1.34418 * 110.11952 * 343.67722 * 18 17 15 21 21 C 1.46493 * 124.35106 * 179.57371 * 20 18 17 22 22 C 1.53004 * 109.47433 * 0.02562 * 21 20 18 23 23 C 1.52998 * 109.47508 * 120.02478 * 21 20 18 24 24 C 1.53002 * 109.47228 * 240.02445 * 21 20 18 25 25 C 1.46765 * 111.29577 * 359.59413 * 20 18 17 26 26 H 1.08999 * 109.46797 * 299.99867 * 1 2 3 27 27 H 1.09002 * 109.47113 * 59.99846 * 1 2 3 28 28 H 1.08997 * 109.47195 * 180.02562 * 1 2 3 29 29 H 0.97007 * 119.99794 * 180.02562 * 7 6 4 30 30 H 0.97005 * 119.99972 * 94.99403 * 12 2 1 31 31 H 1.09002 * 110.48855 * 148.00293 * 17 15 13 32 32 H 1.08998 * 110.48570 * 25.49354 * 17 15 13 33 33 H 1.09003 * 109.46733 * 59.99707 * 22 21 20 34 34 H 1.08990 * 109.47559 * 179.97438 * 22 21 20 35 35 H 1.09001 * 109.46972 * 300.00219 * 22 21 20 36 36 H 1.09003 * 109.46991 * 59.99962 * 23 21 20 37 37 H 1.08997 * 109.47814 * 179.97438 * 23 21 20 38 38 H 1.09003 * 109.46907 * 300.00445 * 23 21 20 39 39 H 1.09001 * 109.46916 * 59.99941 * 24 21 20 40 40 H 1.09000 * 109.47281 * 179.97438 * 24 21 20 41 41 H 1.08999 * 109.47067 * 300.00466 * 24 21 20 42 42 H 1.09001 * 110.23936 * 136.01576 * 25 20 18 43 43 H 1.08998 * 110.24401 * 257.92122 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6033 8 14 2.3213 -1.1203 -4.0080 9 1 1.3428 -2.1617 -4.4119 10 1 2.4866 -0.1413 -5.1123 11 1 3.6293 -1.7582 -3.7122 12 7 2.0184 -0.6905 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8589 1.1586 2.4115 15 6 2.6489 -0.7288 3.5877 16 1 3.6645 -1.0952 3.4378 17 6 1.6983 -1.8809 3.9879 18 6 0.7554 -1.2559 4.9923 19 8 -0.3043 -1.7323 5.3400 20 7 1.2633 -0.0962 5.4439 21 6 0.6013 0.7713 6.4213 22 6 -0.7347 0.1493 6.8328 23 6 1.4938 0.9244 7.6544 24 6 0.3531 2.1461 5.7974 25 6 2.5662 0.1895 4.8315 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 0.7088 1.1614 -3.4844 30 1 2.2490 -1.6318 1.1527 31 1 2.2585 -2.6959 4.4462 32 1 1.1469 -2.2397 3.1188 33 1 -0.5579 -0.8301 7.2772 34 1 -1.2271 0.7945 7.5603 35 1 -1.3706 0.0402 5.9543 36 1 2.4456 1.3675 7.3613 37 1 1.0014 1.5702 8.3815 38 1 1.6706 -0.0551 8.0989 39 1 -0.2828 2.0370 4.9189 40 1 -0.1399 2.7914 6.5245 41 1 1.3049 2.5892 5.5042 42 1 2.6205 1.2360 4.5315 43 1 3.3702 -0.0445 5.5292 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330401854.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:23 Heat of formation + Delta-G solvation = -78.433425 kcal Electronic energy + Delta-G solvation = -23460.520270 eV Core-core repulsion = 20119.451932 eV Total energy + Delta-G solvation = -3341.068338 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.92501 -38.75091 -36.65205 -35.52827 -34.72610 -32.45722 -30.63098 -28.67589 -27.87979 -27.38777 -26.99598 -25.28020 -23.47094 -21.48139 -20.74726 -19.34824 -18.54564 -17.58751 -16.58046 -16.15585 -15.40565 -15.32212 -14.97783 -14.43449 -14.26736 -14.03428 -13.78201 -13.61493 -13.44353 -13.00889 -12.66316 -12.41730 -12.23686 -12.08959 -12.00746 -11.71758 -11.59305 -11.58165 -11.38598 -11.15112 -11.09277 -10.99480 -10.95250 -10.73684 -10.34685 -10.25613 -9.32569 -9.10173 -9.05707 -8.60181 -8.57816 -7.96768 -6.14527 -4.24173 2.69048 3.00212 3.22648 3.24620 3.30058 3.31750 3.91916 4.33328 4.35529 4.42391 4.81237 4.84711 4.89556 5.00050 5.15881 5.19832 5.39637 5.44858 5.49621 5.54093 5.61857 5.70700 5.73121 5.78155 5.84611 5.87287 5.91640 6.03753 6.32596 6.34644 6.72333 6.80632 6.95236 7.12857 7.23696 7.40919 7.52005 7.66329 7.88201 8.12418 8.29867 8.60302 8.74077 9.04952 9.43440 10.91384 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031546 B = 0.004017 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.382737 B = 6968.270609 C = 7084.416781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.265 3.735 3 H 0.049 0.951 4 C -0.535 4.535 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.705 5.705 13 C 0.508 3.492 14 O -0.547 6.547 15 C -0.127 4.127 16 H 0.120 0.880 17 C -0.148 4.148 18 C 0.521 3.479 19 O -0.532 6.532 20 N -0.603 5.603 21 C 0.174 3.826 22 C -0.140 4.140 23 C -0.155 4.155 24 C -0.156 4.156 25 C 0.115 3.885 26 H 0.013 0.987 27 H 0.090 0.910 28 H 0.026 0.974 29 H 0.264 0.736 30 H 0.389 0.611 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.098 0.902 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.769 -2.306 17.196 17.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.164 3.836 3 H 0.066 0.934 4 C -0.573 4.573 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.352 5.352 13 C 0.292 3.708 14 O -0.426 6.426 15 C -0.149 4.149 16 H 0.138 0.862 17 C -0.189 4.189 18 C 0.308 3.692 19 O -0.410 6.410 20 N -0.338 5.338 21 C 0.091 3.909 22 C -0.197 4.197 23 C -0.213 4.213 24 C -0.214 4.214 25 C -0.008 4.008 26 H 0.032 0.968 27 H 0.108 0.892 28 H 0.045 0.955 29 H 0.074 0.926 30 H 0.221 0.779 31 H 0.128 0.872 32 H 0.125 0.875 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.116 0.884 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.869 -1.515 17.288 17.589 hybrid contribution 0.548 -0.887 -1.029 1.464 sum 3.417 -2.402 16.259 16.787 Atomic orbital electron populations 1.22069 0.98432 0.99145 1.00848 1.18754 0.91010 0.93943 0.79921 0.93350 1.21205 1.32552 1.13247 0.90306 0.92045 1.24888 0.94791 0.94918 0.99080 1.69906 1.35821 1.22395 1.23911 0.86444 0.79161 0.79281 0.82190 1.20534 1.21073 1.19839 1.46502 1.64723 1.13565 1.10440 1.20006 0.78908 0.87451 0.84473 1.90653 1.51062 1.15985 1.84853 1.22429 1.01670 0.96254 0.94586 0.86219 1.22396 0.97878 0.98105 1.00501 1.20754 0.85996 0.80900 0.81502 1.90707 1.22494 1.66344 1.61435 1.48319 1.20735 1.21888 1.42818 1.20439 0.92873 0.90209 0.87396 1.22089 0.94997 1.00568 1.02054 1.22175 0.99917 1.02135 0.97067 1.22160 1.02716 0.95227 1.01341 1.22004 0.84600 1.01941 0.92231 0.96777 0.89153 0.95472 0.92555 0.77854 0.87193 0.87456 0.91442 0.92630 0.91206 0.92190 0.91415 0.92347 0.91723 0.91737 0.91898 0.88360 0.90844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 9.26 37.16 0.34 -3.32 16 2 C 0.27 6.62 2.56 -69.08 -0.18 6.44 16 3 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 4 C -0.53 -13.90 8.73 -34.44 -0.30 -14.20 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.70 11.32 55.43 0.63 -24.08 16 8 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 12 N -0.70 -13.94 4.79 -54.93 -0.26 -14.20 16 13 C 0.51 9.36 7.13 -10.99 -0.08 9.28 16 14 O -0.55 -12.20 15.18 5.56 0.08 -12.12 16 15 C -0.13 -1.60 3.56 -89.95 -0.32 -1.92 16 16 H 0.12 1.13 8.14 -51.93 -0.42 0.70 16 17 C -0.15 -1.82 6.38 -26.74 -0.17 -1.99 16 18 C 0.52 7.90 7.84 -10.86 -0.09 7.81 16 19 O -0.53 -9.58 13.99 5.55 0.08 -9.51 16 20 N -0.60 -8.08 2.76 -157.36 -0.43 -8.51 16 21 C 0.17 2.11 1.20 -131.82 -0.16 1.95 16 22 C -0.14 -1.79 7.00 37.16 0.26 -1.53 16 23 C -0.15 -1.43 8.54 37.16 0.32 -1.11 16 24 C -0.16 -1.92 8.49 37.16 0.32 -1.61 16 25 C 0.12 1.38 5.99 -2.93 -0.02 1.36 16 26 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 28 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.39 6.58 8.36 -40.82 -0.34 6.23 16 31 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.11 1.43 7.51 -51.93 -0.39 1.04 16 33 H 0.07 0.92 7.06 -51.93 -0.37 0.56 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 1.08 7.08 -51.93 -0.37 0.71 16 36 H 0.06 0.51 7.90 -51.93 -0.41 0.10 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.77 7.21 -51.93 -0.37 0.40 16 42 H 0.10 1.34 5.94 -51.93 -0.31 1.03 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 343.04 15.07 5.17 5.17 Total: -1.00 -31.89 343.04 -6.96 -38.85 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -7.04 Total: 6.20 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: -0.17 Total: 2.83 kcal Atomic # 7 Polarization: -46.73 SS G_CDS: -0.07 Total: -46.80 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: 0.16 Total: -21.63 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.89 -6.96 -38.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330401854.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.586 kcal (2) G-P(sol) polarization free energy of solvation -31.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds