Wall clock time and date at job start Tue Mar 31 2020 05:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47302 * 2 1 4 4 C 1.50696 * 109.46883 * 120.00082 * 2 1 3 5 5 H 1.08006 * 120.00289 * 120.00554 * 4 2 1 6 6 C 1.37874 * 120.00383 * 299.99299 * 4 2 1 7 7 N 1.31515 * 120.00644 * 179.97438 * 6 4 2 8 8 Si 1.86808 * 119.99741 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.46908 * 89.99512 * 8 6 4 10 10 H 1.48495 * 109.46917 * 209.99685 * 8 6 4 11 11 H 1.48498 * 109.47000 * 329.99337 * 8 6 4 12 12 N 1.46501 * 109.47077 * 240.00033 * 2 1 3 13 13 C 1.34769 * 120.00130 * 84.99819 * 12 2 1 14 14 O 1.21287 * 119.99942 * 0.02562 * 13 12 2 15 15 C 1.50700 * 120.00155 * 179.97438 * 13 12 2 16 16 H 1.08996 * 110.85738 * 303.79344 * 15 13 12 17 17 C 1.54631 * 110.96667 * 67.62265 * 15 13 12 18 18 C 1.51284 * 104.19385 * 142.91721 * 17 15 13 19 19 O 1.21286 * 124.94229 * 163.74611 * 18 17 15 20 20 N 1.34621 * 110.15232 * 343.76674 * 18 17 15 21 21 C 1.46498 * 124.47196 * 179.53197 * 20 18 17 22 22 C 1.52995 * 109.47686 * 240.02825 * 21 20 18 23 23 C 1.52999 * 109.46793 * 0.03060 * 21 20 18 24 24 C 1.53003 * 109.46889 * 120.02538 * 21 20 18 25 25 C 1.46768 * 111.17925 * 359.56068 * 20 18 17 26 26 H 1.09001 * 109.47267 * 300.00074 * 1 2 3 27 27 H 1.09001 * 109.47316 * 60.00358 * 1 2 3 28 28 H 1.09008 * 109.47101 * 179.97438 * 1 2 3 29 29 H 0.96994 * 120.00426 * 179.97438 * 7 6 4 30 30 H 0.97000 * 119.99756 * 265.00196 * 12 2 1 31 31 H 1.09000 * 110.48694 * 261.59435 * 17 15 13 32 32 H 1.08995 * 110.48768 * 24.10699 * 17 15 13 33 33 H 1.08996 * 109.47137 * 59.99612 * 22 21 20 34 34 H 1.08999 * 109.47291 * 179.97438 * 22 21 20 35 35 H 1.09002 * 109.46903 * 300.00006 * 22 21 20 36 36 H 1.09004 * 109.47510 * 59.99848 * 23 21 20 37 37 H 1.08999 * 109.46992 * 179.97438 * 23 21 20 38 38 H 1.09002 * 109.47211 * 299.99089 * 23 21 20 39 39 H 1.09002 * 109.47109 * 60.00356 * 24 21 20 40 40 H 1.08999 * 109.47086 * 180.02562 * 24 21 20 41 41 H 1.09004 * 109.47183 * 300.00640 * 24 21 20 42 42 H 1.09002 * 110.24468 * 258.00978 * 25 20 18 43 43 H 1.09002 * 110.24463 * 136.09736 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 2.1372 -0.8596 3.5566 8 14 0.6249 1.2792 2.6541 9 1 -0.8027 0.8729 2.6997 10 1 0.9762 1.9951 3.9068 11 1 0.8474 2.1766 1.4921 12 7 2.0183 -0.6906 -1.1962 13 6 2.1470 -0.0183 -2.3571 14 8 1.8590 1.1586 -2.4115 15 6 2.6499 -0.7286 -3.5874 16 1 3.6209 -1.1872 -3.4011 17 6 1.6260 -1.7786 -4.0775 18 6 1.7118 -1.7044 -5.5861 19 8 1.2844 -2.5455 -6.3484 20 7 2.3319 -0.5696 -5.9602 21 6 2.5913 -0.1858 -7.3500 22 6 4.0985 -0.0327 -7.5640 23 6 2.0504 -1.2675 -8.2871 24 6 1.8958 1.1435 -7.6503 25 6 2.7155 0.2343 -4.7937 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.9033 -0.5280 4.4375 30 1 2.2490 -1.6318 -1.1526 31 1 1.9027 -2.7733 -3.7281 32 1 0.6230 -1.5211 -3.7374 33 1 4.5939 -0.9797 -7.3501 34 1 4.2914 0.2524 -8.5982 35 1 4.4838 0.7379 -6.8964 36 1 0.9766 -1.3766 -8.1347 37 1 2.2430 -0.9818 -9.3212 38 1 2.5459 -2.2145 -8.0733 39 1 2.2812 1.9141 -6.9826 40 1 2.0885 1.4288 -8.6845 41 1 0.8220 1.0344 -7.4977 42 1 2.0155 1.0585 -4.6569 43 1 3.7287 0.6170 -4.9161 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330401856.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:25 Heat of formation + Delta-G solvation = -71.644502 kcal Electronic energy + Delta-G solvation = -23050.690634 eV Core-core repulsion = 19709.916686 eV Total energy + Delta-G solvation = -3340.773948 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.02103 -39.07775 -36.83930 -35.74728 -34.96178 -32.48964 -30.97976 -29.49962 -28.04029 -27.57880 -27.18594 -25.25608 -23.62805 -21.58644 -20.83715 -19.60989 -18.71408 -17.66242 -16.68710 -16.49934 -15.77140 -15.46084 -15.20368 -14.70675 -14.25818 -14.17168 -14.01686 -13.78229 -13.56102 -13.15613 -13.05406 -12.79788 -12.45622 -12.32529 -12.26267 -12.24564 -11.86903 -11.76989 -11.62007 -11.50709 -11.25603 -11.18997 -11.15841 -10.85565 -10.23895 -9.80610 -9.57683 -9.29070 -9.21715 -8.81056 -8.74853 -8.26353 -6.25145 -4.28327 2.52347 2.77238 3.02633 3.20364 3.32522 3.35864 3.71804 4.25193 4.27597 4.32178 4.64797 4.67005 4.79449 4.86166 4.91565 5.09686 5.27290 5.31315 5.35088 5.42590 5.49371 5.51652 5.56274 5.60765 5.70878 5.72893 5.83498 5.89783 6.07028 6.15344 6.25403 6.31437 6.50077 6.54400 6.78935 7.04452 7.11441 7.19808 7.44875 8.05869 8.12224 8.43922 8.68911 8.80650 9.35153 10.86941 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.035269 B = 0.003701 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.717286 B = 7564.314399 C = 7777.584391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.236 3.764 3 H 0.050 0.950 4 C -0.537 4.537 5 H 0.081 0.919 6 C 0.079 3.921 7 N -0.891 5.891 8 Si 0.885 3.115 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.262 1.262 12 N -0.695 5.695 13 C 0.515 3.485 14 O -0.551 6.551 15 C -0.124 4.124 16 H 0.114 0.886 17 C -0.145 4.145 18 C 0.522 3.478 19 O -0.531 6.531 20 N -0.611 5.611 21 C 0.173 3.827 22 C -0.158 4.158 23 C -0.140 4.140 24 C -0.158 4.158 25 C 0.117 3.883 26 H 0.048 0.952 27 H 0.035 0.965 28 H 0.054 0.946 29 H 0.268 0.732 30 H 0.397 0.603 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.056 0.944 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.060 0.940 42 H 0.092 0.908 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.076 0.985 -20.228 20.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.133 3.867 3 H 0.067 0.933 4 C -0.575 4.575 5 H 0.099 0.901 6 C -0.125 4.125 7 N -0.528 5.528 8 Si 0.715 3.285 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.187 1.187 12 N -0.342 5.342 13 C 0.299 3.701 14 O -0.430 6.430 15 C -0.146 4.146 16 H 0.132 0.868 17 C -0.185 4.185 18 C 0.310 3.690 19 O -0.408 6.408 20 N -0.346 5.346 21 C 0.090 3.910 22 C -0.216 4.216 23 C -0.197 4.197 24 C -0.216 4.216 25 C -0.006 4.006 26 H 0.066 0.934 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.231 0.769 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.110 0.890 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.664 1.404 -20.510 20.625 hybrid contribution -0.401 0.352 0.494 0.727 sum 1.263 1.756 -20.016 20.132 Atomic orbital electron populations 1.22457 0.99227 1.00938 0.99359 1.19133 0.90181 0.94691 0.82710 0.93267 1.21025 1.33422 1.14503 0.88507 0.90142 1.24832 0.95458 0.96695 0.95524 1.69861 1.44818 1.40049 0.98082 0.86876 0.80561 0.83575 0.77474 1.20288 1.22135 1.18671 1.46174 1.64553 1.13915 1.09600 1.19937 0.78610 0.87232 0.84340 1.90667 1.51500 1.15918 1.84948 1.22256 1.01140 0.96959 0.94269 0.86792 1.22348 1.01638 1.01153 0.93369 1.20829 0.76589 0.80829 0.90715 1.90715 1.49195 1.42422 1.58489 1.48518 1.58527 1.21481 1.06025 1.20454 0.95209 0.95514 0.79825 1.22191 0.94648 1.02495 1.02277 1.22093 1.02726 0.97857 0.97063 1.22198 1.01143 0.96292 1.02013 1.21936 1.02345 0.94065 0.82296 0.93402 0.94564 0.92735 0.92228 0.76946 0.87186 0.87288 0.92097 0.91315 0.92014 0.91263 0.92521 0.91298 0.91929 0.91381 0.92100 0.88950 0.90031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.46 8.96 37.16 0.33 -3.13 16 2 C 0.24 5.35 2.15 -69.08 -0.15 5.20 16 3 H 0.05 1.23 6.64 -51.93 -0.34 0.89 16 4 C -0.54 -13.99 9.31 -34.44 -0.32 -14.31 16 5 H 0.08 2.20 7.98 -52.48 -0.42 1.78 16 6 C 0.08 2.15 5.45 -17.82 -0.10 2.06 16 7 N -0.89 -25.88 13.96 55.43 0.77 -25.11 16 8 Si 0.89 21.24 24.37 -169.99 -4.14 17.10 16 9 H -0.28 -6.43 6.87 56.52 0.39 -6.04 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.26 -6.21 6.53 56.52 0.37 -5.85 16 12 N -0.70 -12.57 5.07 -54.94 -0.28 -12.85 16 13 C 0.52 8.56 7.02 -10.99 -0.08 8.48 16 14 O -0.55 -11.11 15.17 5.55 0.08 -11.03 16 15 C -0.12 -1.48 3.54 -90.14 -0.32 -1.80 16 16 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 17 C -0.14 -1.66 6.41 -26.74 -0.17 -1.83 16 18 C 0.52 6.84 7.85 -10.77 -0.08 6.75 16 19 O -0.53 -8.33 14.02 5.55 0.08 -8.25 16 20 N -0.61 -6.95 2.77 -157.51 -0.44 -7.39 16 21 C 0.17 1.70 1.20 -131.82 -0.16 1.54 16 22 C -0.16 -1.27 8.49 37.16 0.32 -0.95 16 23 C -0.14 -1.47 7.00 37.16 0.26 -1.21 16 24 C -0.16 -1.39 8.54 37.16 0.32 -1.07 16 25 C 0.12 1.32 5.95 -3.12 -0.02 1.30 16 26 H 0.05 1.07 3.27 -51.93 -0.17 0.90 16 27 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.05 1.10 8.14 -51.92 -0.42 0.67 16 29 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 30 H 0.40 6.25 8.54 -40.82 -0.35 5.91 16 31 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.11 1.32 7.89 -51.93 -0.41 0.91 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.47 7.21 -51.93 -0.37 0.10 16 36 H 0.07 0.85 7.07 -51.93 -0.37 0.48 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.82 7.09 -51.93 -0.37 0.46 16 39 H 0.06 0.54 7.90 -51.93 -0.41 0.13 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.09 1.21 6.96 -51.93 -0.36 0.84 16 43 H 0.08 0.80 7.12 -51.93 -0.37 0.43 16 LS Contribution 336.99 15.07 5.08 5.08 Total: -1.00 -31.46 336.99 -5.94 -37.40 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -6.93 Total: 4.01 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -0.17 Total: 1.04 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: 0.06 Total: -45.35 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: 0.16 Total: -19.28 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.14 Total: 17.10 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.46 -5.94 -37.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330401856.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.243 kcal (2) G-P(sol) polarization free energy of solvation -31.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds