Wall clock time and date at job start Tue Mar 31 2020 05:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47302 * 2 1 4 4 C 1.50696 * 109.46883 * 120.00082 * 2 1 3 5 5 H 1.08006 * 120.00289 * 120.00554 * 4 2 1 6 6 C 1.37874 * 120.00383 * 299.99299 * 4 2 1 7 7 N 1.31515 * 120.00644 * 179.97438 * 6 4 2 8 8 Si 1.86808 * 119.99741 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.46908 * 89.99512 * 8 6 4 10 10 H 1.48495 * 109.46917 * 209.99685 * 8 6 4 11 11 H 1.48498 * 109.47000 * 329.99337 * 8 6 4 12 12 N 1.46501 * 109.47077 * 240.00033 * 2 1 3 13 13 C 1.34769 * 120.00130 * 84.99819 * 12 2 1 14 14 O 1.21287 * 119.99942 * 0.02562 * 13 12 2 15 15 C 1.50700 * 120.00155 * 179.97438 * 13 12 2 16 16 H 1.08996 * 110.85738 * 303.79344 * 15 13 12 17 17 C 1.54631 * 110.96667 * 67.62265 * 15 13 12 18 18 C 1.51284 * 104.19385 * 142.91721 * 17 15 13 19 19 O 1.21286 * 124.94229 * 163.74611 * 18 17 15 20 20 N 1.34621 * 110.15232 * 343.76674 * 18 17 15 21 21 C 1.46498 * 124.47196 * 179.53197 * 20 18 17 22 22 C 1.52995 * 109.47686 * 240.02825 * 21 20 18 23 23 C 1.52999 * 109.46793 * 0.03060 * 21 20 18 24 24 C 1.53003 * 109.46889 * 120.02538 * 21 20 18 25 25 C 1.46768 * 111.17925 * 359.56068 * 20 18 17 26 26 H 1.09001 * 109.47267 * 300.00074 * 1 2 3 27 27 H 1.09001 * 109.47316 * 60.00358 * 1 2 3 28 28 H 1.09008 * 109.47101 * 179.97438 * 1 2 3 29 29 H 0.96994 * 120.00426 * 179.97438 * 7 6 4 30 30 H 0.97000 * 119.99756 * 265.00196 * 12 2 1 31 31 H 1.09000 * 110.48694 * 261.59435 * 17 15 13 32 32 H 1.08995 * 110.48768 * 24.10699 * 17 15 13 33 33 H 1.08996 * 109.47137 * 59.99612 * 22 21 20 34 34 H 1.08999 * 109.47291 * 179.97438 * 22 21 20 35 35 H 1.09002 * 109.46903 * 300.00006 * 22 21 20 36 36 H 1.09004 * 109.47510 * 59.99848 * 23 21 20 37 37 H 1.08999 * 109.46992 * 179.97438 * 23 21 20 38 38 H 1.09002 * 109.47211 * 299.99089 * 23 21 20 39 39 H 1.09002 * 109.47109 * 60.00356 * 24 21 20 40 40 H 1.08999 * 109.47086 * 180.02562 * 24 21 20 41 41 H 1.09004 * 109.47183 * 300.00640 * 24 21 20 42 42 H 1.09002 * 110.24468 * 258.00978 * 25 20 18 43 43 H 1.09002 * 110.24463 * 136.09736 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 2.1372 -0.8596 3.5566 8 14 0.6249 1.2792 2.6541 9 1 -0.8027 0.8729 2.6997 10 1 0.9762 1.9951 3.9068 11 1 0.8474 2.1766 1.4921 12 7 2.0183 -0.6906 -1.1962 13 6 2.1470 -0.0183 -2.3571 14 8 1.8590 1.1586 -2.4115 15 6 2.6499 -0.7286 -3.5874 16 1 3.6209 -1.1872 -3.4011 17 6 1.6260 -1.7786 -4.0775 18 6 1.7118 -1.7044 -5.5861 19 8 1.2844 -2.5455 -6.3484 20 7 2.3319 -0.5696 -5.9602 21 6 2.5913 -0.1858 -7.3500 22 6 4.0985 -0.0327 -7.5640 23 6 2.0504 -1.2675 -8.2871 24 6 1.8958 1.1435 -7.6503 25 6 2.7155 0.2343 -4.7937 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.9033 -0.5280 4.4375 30 1 2.2490 -1.6318 -1.1526 31 1 1.9027 -2.7733 -3.7281 32 1 0.6230 -1.5211 -3.7374 33 1 4.5939 -0.9797 -7.3501 34 1 4.2914 0.2524 -8.5982 35 1 4.4838 0.7379 -6.8964 36 1 0.9766 -1.3766 -8.1347 37 1 2.2430 -0.9818 -9.3212 38 1 2.5459 -2.2145 -8.0733 39 1 2.2812 1.9141 -6.9826 40 1 2.0885 1.4288 -8.6845 41 1 0.8220 1.0344 -7.4977 42 1 2.0155 1.0585 -4.6569 43 1 3.7287 0.6170 -4.9161 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330401856.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:25 Heat of formation + Delta-G solvation = -93.541370 kcal Electronic energy + Delta-G solvation = -23051.640153 eV Core-core repulsion = 19709.916686 eV Total energy + Delta-G solvation = -3341.723468 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.03662 -40.43014 -37.80363 -37.03262 -36.36229 -34.38972 -32.31535 -30.87291 -28.94693 -28.23451 -28.04991 -27.20451 -24.87794 -22.51735 -22.37373 -21.06187 -19.66663 -19.13055 -18.09347 -17.64968 -17.31135 -16.79006 -16.31136 -15.99274 -15.69302 -15.10172 -15.04577 -14.81138 -14.75067 -14.61258 -14.39054 -14.10813 -13.95681 -13.62803 -13.22628 -13.15761 -13.02167 -12.97383 -12.76354 -12.62858 -12.42350 -12.36280 -12.12561 -12.03191 -11.94567 -11.60096 -11.25249 -10.88431 -10.83112 -10.43813 -9.87336 -9.67425 -8.35993 -6.41748 1.29677 1.37810 1.46470 1.51505 1.68229 1.88478 2.27849 2.41139 3.00660 3.24827 3.36895 3.81347 3.81981 3.93789 3.94551 4.09229 4.23225 4.47856 4.48579 4.57232 4.60502 4.68877 4.71049 4.71879 4.75235 4.81333 4.85145 4.92601 4.93990 4.96803 5.02704 5.18355 5.30179 5.34875 5.36964 5.45438 5.65412 5.68734 6.10792 6.14709 6.60917 6.86463 7.13983 7.20991 7.42998 8.79144 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.035269 B = 0.003701 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.717286 B = 7564.314399 C = 7777.584391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.241 3.759 3 H 0.027 0.973 4 C -0.531 4.531 5 H 0.059 0.941 6 C 0.029 3.971 7 N -0.935 5.935 8 Si 0.938 3.062 9 H -0.263 1.263 10 H -0.295 1.295 11 H -0.259 1.259 12 N -0.695 5.695 13 C 0.518 3.482 14 O -0.585 6.585 15 C -0.109 4.109 16 H 0.144 0.856 17 C -0.139 4.139 18 C 0.516 3.484 19 O -0.562 6.562 20 N -0.606 5.606 21 C 0.164 3.836 22 C -0.153 4.153 23 C -0.133 4.133 24 C -0.155 4.155 25 C 0.120 3.880 26 H 0.039 0.961 27 H 0.047 0.953 28 H 0.064 0.936 29 H 0.269 0.731 30 H 0.409 0.591 31 H 0.130 0.870 32 H 0.103 0.897 33 H 0.054 0.946 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.045 0.955 37 H 0.080 0.920 38 H 0.051 0.949 39 H 0.064 0.936 40 H 0.089 0.911 41 H 0.045 0.955 42 H 0.076 0.924 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.417 1.605 -21.894 22.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.137 3.863 3 H 0.044 0.956 4 C -0.570 4.570 5 H 0.077 0.923 6 C -0.171 4.171 7 N -0.574 5.574 8 Si 0.765 3.235 9 H -0.189 1.189 10 H -0.222 1.222 11 H -0.184 1.184 12 N -0.344 5.344 13 C 0.304 3.696 14 O -0.466 6.466 15 C -0.131 4.131 16 H 0.162 0.838 17 C -0.180 4.180 18 C 0.305 3.695 19 O -0.442 6.442 20 N -0.339 5.339 21 C 0.081 3.919 22 C -0.210 4.210 23 C -0.190 4.190 24 C -0.213 4.213 25 C -0.003 4.003 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.245 0.755 31 H 0.148 0.852 32 H 0.121 0.879 33 H 0.074 0.926 34 H 0.106 0.894 35 H 0.087 0.913 36 H 0.064 0.936 37 H 0.098 0.902 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.107 0.893 41 H 0.064 0.936 42 H 0.094 0.906 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.016 2.023 -22.207 22.390 hybrid contribution -0.463 0.141 0.940 1.057 sum 1.553 2.164 -21.267 21.433 Atomic orbital electron populations 1.22358 0.97961 1.01703 0.99434 1.18767 0.91076 0.93338 0.83167 0.95557 1.21274 1.32228 1.13579 0.89881 0.92307 1.25550 0.96845 0.99278 0.95440 1.69973 1.46786 1.41928 0.98667 0.86022 0.79699 0.80502 0.77229 1.18851 1.22236 1.18406 1.45988 1.64931 1.14479 1.08958 1.20582 0.77326 0.86794 0.84851 1.90658 1.52721 1.17684 1.85558 1.22172 1.02286 0.96741 0.91878 0.83836 1.22347 1.01227 1.02041 0.92358 1.21056 0.76388 0.80933 0.91133 1.90707 1.50594 1.43614 1.59279 1.48630 1.57685 1.20806 1.06825 1.20710 0.96781 0.95639 0.78728 1.22153 0.92723 1.02468 1.03704 1.21999 1.00908 0.97430 0.98700 1.22174 0.99992 0.95649 1.03437 1.21913 1.03128 0.93328 0.81958 0.94285 0.93438 0.91653 0.92129 0.75502 0.85233 0.87877 0.92639 0.89438 0.91348 0.93635 0.90151 0.93019 0.91735 0.89256 0.93620 0.90573 0.87843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.45 8.96 71.98 0.65 -5.80 16 2 C 0.24 10.72 2.15 44.24 0.10 10.82 16 3 H 0.03 1.31 6.64 -2.39 -0.02 1.29 16 4 C -0.53 -27.70 9.31 25.60 0.24 -27.46 16 5 H 0.06 3.25 7.98 -2.91 -0.02 3.23 16 6 C 0.03 1.57 5.45 84.65 0.46 2.03 16 7 N -0.93 -54.88 13.96 21.45 0.30 -54.58 16 8 Si 0.94 43.51 24.37 68.60 1.67 45.18 16 9 H -0.26 -11.53 6.87 99.48 0.68 -10.85 16 10 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 11 H -0.26 -11.83 6.53 99.48 0.65 -11.18 16 12 N -0.70 -24.16 5.07 -446.11 -2.26 -26.42 16 13 C 0.52 16.34 7.02 87.66 0.62 16.95 16 14 O -0.59 -22.91 15.17 -3.05 -0.05 -22.95 16 15 C -0.11 -2.33 3.54 -10.48 -0.04 -2.36 16 16 H 0.14 2.31 8.14 -2.39 -0.02 2.29 16 17 C -0.14 -2.94 6.41 30.59 0.20 -2.74 16 18 C 0.52 12.89 7.85 87.87 0.69 13.58 16 19 O -0.56 -17.44 14.02 -3.05 -0.04 -17.48 16 20 N -0.61 -12.75 2.77 -770.72 -2.13 -14.88 16 21 C 0.16 2.90 1.20 3.60 0.00 2.90 16 22 C -0.15 -2.00 8.49 71.98 0.61 -1.39 16 23 C -0.13 -2.63 7.00 71.98 0.50 -2.13 16 24 C -0.15 -2.40 8.54 71.98 0.61 -1.78 16 25 C 0.12 2.45 5.95 86.83 0.52 2.97 16 26 H 0.04 1.67 3.27 -2.39 -0.01 1.66 16 27 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 29 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 30 H 0.41 12.22 8.54 -92.71 -0.79 11.43 16 31 H 0.13 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.10 2.34 7.89 -2.39 -0.02 2.32 16 33 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.07 0.82 7.21 -2.39 -0.02 0.80 16 36 H 0.04 1.11 7.07 -2.38 -0.02 1.09 16 37 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.05 1.20 7.09 -2.39 -0.02 1.18 16 39 H 0.06 0.98 7.90 -2.39 -0.02 0.96 16 40 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 42 H 0.08 1.87 6.96 -2.39 -0.02 1.86 16 43 H 0.10 1.70 7.12 -2.39 -0.02 1.68 16 Total: -1.00 -68.29 336.99 2.78 -65.51 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: 0.13 Total: 20.06 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: 5.16 Total: 5.57 kcal Atomic # 7 Polarization: -91.79 SS G_CDS: -4.09 Total: -95.89 kcal Atomic # 8 Polarization: -40.34 SS G_CDS: -0.09 Total: -40.43 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.67 Total: 45.18 kcal Total: -68.29 2.78 -65.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330401856.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.031 kcal (2) G-P(sol) polarization free energy of solvation -68.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds