Wall clock time and date at job start Tue Mar 31 2020 05:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.34777 * 120.00015 * 84.99707 * 12 2 1 14 14 O 1.21279 * 120.00228 * 359.97438 * 13 12 2 15 15 C 1.50709 * 119.99692 * 180.02562 * 13 12 2 16 16 H 1.08997 * 110.85414 * 59.30485 * 15 13 12 17 17 C 1.54630 * 110.96693 * 295.50791 * 15 13 12 18 18 C 1.51340 * 104.16633 * 217.11101 * 17 15 13 19 19 O 1.21281 * 124.93325 * 196.23000 * 18 17 15 20 20 N 1.34425 * 110.13174 * 16.20451 * 18 17 15 21 21 C 1.46499 * 124.35114 * 180.45839 * 20 18 17 22 22 C 1.52998 * 109.47076 * 239.97827 * 21 20 18 23 23 C 1.53004 * 109.47107 * 359.97438 * 21 20 18 24 24 C 1.53000 * 109.46963 * 119.97952 * 21 20 18 25 25 C 1.46770 * 111.29506 * 0.43761 * 20 18 17 26 26 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 28 28 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 0.97005 * 119.99880 * 265.00058 * 12 2 1 31 31 H 1.08996 * 110.49111 * 335.76806 * 17 15 13 32 32 H 1.09004 * 110.48109 * 98.40888 * 17 15 13 33 33 H 1.08998 * 109.46912 * 59.99935 * 22 21 20 34 34 H 1.08997 * 109.47253 * 180.02562 * 22 21 20 35 35 H 1.09004 * 109.47018 * 300.00291 * 22 21 20 36 36 H 1.08999 * 109.46658 * 60.00473 * 23 21 20 37 37 H 1.08997 * 109.46674 * 179.97438 * 23 21 20 38 38 H 1.08993 * 109.46892 * 299.99837 * 23 21 20 39 39 H 1.08998 * 109.47499 * 59.99893 * 24 21 20 40 40 H 1.09005 * 109.47337 * 179.97438 * 24 21 20 41 41 H 1.09000 * 109.47052 * 299.99767 * 24 21 20 42 42 H 1.09000 * 110.24418 * 223.98005 * 25 20 18 43 43 H 1.09000 * 110.24085 * 101.98754 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0180 -2.3571 14 8 1.8581 1.1586 -2.4117 15 6 2.6488 -0.7286 -3.5878 16 1 1.9979 -1.5638 -3.8462 17 6 4.1082 -1.2026 -3.3966 18 6 4.7445 -0.9997 -4.7547 19 8 5.7903 -1.4984 -5.1132 20 7 3.9818 -0.1870 -5.5062 21 6 4.3011 0.2098 -6.8798 22 6 4.4373 1.7319 -6.9524 23 6 5.6188 -0.4410 -7.3055 24 6 3.1806 -0.2472 -7.8161 25 6 2.7879 0.2514 -4.7738 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 0.7089 1.1611 3.4845 30 1 2.2490 -1.6317 -1.1527 31 1 4.6115 -0.5946 -2.6450 32 1 4.1335 -2.2557 -3.1162 33 1 5.2355 2.0574 -6.2853 34 1 4.6744 2.0272 -7.9745 35 1 3.4986 2.1956 -6.6491 36 1 5.5216 -1.5255 -7.2538 37 1 5.8560 -0.1462 -8.3276 38 1 6.4169 -0.1154 -6.6384 39 1 2.2419 0.2165 -7.5129 40 1 3.4179 0.0484 -8.8381 41 1 3.0835 -1.3316 -7.7644 42 1 1.9090 0.1936 -5.4159 43 1 2.9224 1.2695 -4.4082 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330401858.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:28 Heat of formation + Delta-G solvation = -79.808412 kcal Electronic energy + Delta-G solvation = -22976.466919 eV Core-core repulsion = 19635.338957 eV Total energy + Delta-G solvation = -3341.127962 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.95221 -38.89608 -36.77191 -35.61582 -34.77161 -32.47512 -30.72250 -28.70476 -27.97355 -27.53275 -27.10988 -25.30350 -23.47870 -21.52316 -20.73101 -19.41989 -18.64852 -17.54915 -16.61030 -16.29634 -15.42768 -15.36592 -15.12068 -14.53999 -14.26011 -14.08156 -13.92597 -13.72504 -13.51718 -13.01541 -12.81158 -12.46040 -12.39306 -12.21924 -12.13309 -11.82422 -11.79830 -11.46427 -11.42833 -11.14497 -11.12338 -11.08673 -10.97295 -10.77632 -10.37166 -10.27068 -9.53292 -9.11921 -9.08729 -8.69175 -8.59292 -8.00516 -6.16088 -4.25732 2.59937 2.84580 3.19717 3.24016 3.29434 3.30645 3.87544 4.29615 4.35939 4.42048 4.71559 4.72187 4.84420 4.95009 5.01823 5.16495 5.32289 5.35691 5.46630 5.49694 5.54192 5.58778 5.64588 5.65769 5.75707 5.81841 5.88420 5.98050 6.12225 6.20418 6.60156 6.76844 6.90265 7.08994 7.11417 7.36896 7.48810 7.64260 7.85464 8.10055 8.19098 8.56832 8.71626 9.00792 9.41880 10.89801 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031458 B = 0.003662 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.858162 B = 7644.443220 C = 8140.672186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.049 0.951 4 C -0.536 4.536 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.286 1.286 10 H -0.276 1.276 11 H -0.276 1.276 12 N -0.703 5.703 13 C 0.513 3.487 14 O -0.550 6.550 15 C -0.125 4.125 16 H 0.111 0.889 17 C -0.145 4.145 18 C 0.522 3.478 19 O -0.533 6.533 20 N -0.610 5.610 21 C 0.173 3.827 22 C -0.158 4.158 23 C -0.140 4.140 24 C -0.158 4.158 25 C 0.118 3.882 26 H 0.027 0.973 27 H 0.090 0.910 28 H 0.015 0.985 29 H 0.265 0.735 30 H 0.390 0.610 31 H 0.111 0.889 32 H 0.108 0.892 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.055 0.945 38 H 0.069 0.931 39 H 0.061 0.939 40 H 0.068 0.932 41 H 0.059 0.941 42 H 0.080 0.920 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.468 -2.903 -17.602 18.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.067 0.933 4 C -0.574 4.574 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.211 1.211 10 H -0.201 1.201 11 H -0.201 1.201 12 N -0.350 5.350 13 C 0.296 3.704 14 O -0.429 6.429 15 C -0.147 4.147 16 H 0.129 0.871 17 C -0.186 4.186 18 C 0.310 3.690 19 O -0.410 6.410 20 N -0.345 5.345 21 C 0.089 3.911 22 C -0.217 4.217 23 C -0.197 4.197 24 C -0.216 4.216 25 C -0.005 4.005 26 H 0.046 0.954 27 H 0.109 0.891 28 H 0.034 0.966 29 H 0.075 0.925 30 H 0.223 0.777 31 H 0.129 0.871 32 H 0.126 0.874 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.099 0.901 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.726 -2.158 -17.722 18.237 hybrid contribution 0.192 -0.891 0.976 1.335 sum 3.918 -3.049 -16.746 17.467 Atomic orbital electron populations 1.22082 0.98386 0.99158 1.00957 1.18773 0.91072 0.94001 0.79905 0.93283 1.21174 1.32645 1.13318 0.90300 0.92052 1.24884 0.94752 0.94923 0.99076 1.69889 1.35741 1.22382 1.24058 0.86503 0.79217 0.79594 0.81768 1.21130 1.20133 1.20132 1.46519 1.64452 1.13638 1.10380 1.19890 0.78837 0.87297 0.84381 1.90669 1.51453 1.15913 1.84908 1.22281 0.97397 0.99751 0.95253 0.87108 1.22375 0.94533 1.04920 0.96742 1.20813 0.83795 0.77614 0.86764 1.90708 1.22605 1.51419 1.76280 1.48476 1.24235 1.48210 1.13559 1.20456 0.95916 0.94767 0.79933 1.22197 1.02762 0.94331 1.02368 1.22092 0.95484 1.01715 1.00410 1.22188 0.98372 1.01880 0.99124 1.21934 0.87593 0.99291 0.91718 0.95430 0.89108 0.96634 0.92475 0.77744 0.87122 0.87357 0.92054 0.91417 0.91913 0.91334 0.92582 0.91226 0.92031 0.91348 0.92152 0.90125 0.88957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 9.26 37.16 0.34 -3.18 16 2 C 0.26 6.42 2.56 -69.09 -0.18 6.25 16 3 H 0.05 1.39 7.58 -51.93 -0.39 0.99 16 4 C -0.54 -13.75 8.73 -34.44 -0.30 -14.05 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.38 11.32 55.43 0.63 -23.75 16 8 Si 0.90 20.27 29.54 -169.99 -5.02 15.25 16 9 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 12 N -0.70 -13.47 5.06 -54.93 -0.28 -13.75 16 13 C 0.51 9.14 7.03 -10.98 -0.08 9.06 16 14 O -0.55 -11.97 15.19 5.56 0.08 -11.88 16 15 C -0.12 -1.59 3.54 -90.14 -0.32 -1.91 16 16 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 17 C -0.15 -1.82 6.40 -26.71 -0.17 -1.99 16 18 C 0.52 7.24 7.84 -10.83 -0.08 7.16 16 19 O -0.53 -8.73 13.99 5.56 0.08 -8.65 16 20 N -0.61 -7.37 2.76 -157.55 -0.43 -7.80 16 21 C 0.17 1.79 1.20 -131.82 -0.16 1.63 16 22 C -0.16 -1.48 8.54 37.16 0.32 -1.16 16 23 C -0.14 -1.53 7.00 37.16 0.26 -1.27 16 24 C -0.16 -1.33 8.49 37.16 0.32 -1.01 16 25 C 0.12 1.43 5.93 -3.12 -0.02 1.41 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 28 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.39 6.41 8.54 -40.82 -0.35 6.06 16 31 H 0.11 1.51 7.89 -51.93 -0.41 1.10 16 32 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.58 7.90 -51.93 -0.41 0.17 16 36 H 0.07 0.85 7.08 -51.93 -0.37 0.48 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.90 7.06 -51.93 -0.37 0.53 16 39 H 0.06 0.50 7.21 -51.93 -0.37 0.12 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.08 0.84 7.12 -51.93 -0.37 0.47 16 43 H 0.09 1.30 7.01 -51.93 -0.36 0.94 16 LS Contribution 343.80 15.07 5.18 5.18 Total: -1.00 -30.52 343.80 -6.99 -37.51 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -7.07 Total: 5.29 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -0.16 Total: 2.61 kcal Atomic # 7 Polarization: -45.22 SS G_CDS: -0.08 Total: -45.31 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: 0.16 Total: -20.53 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.52 -6.99 -37.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330401858.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.294 kcal (2) G-P(sol) polarization free energy of solvation -30.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds