Wall clock time and date at job start Tue Mar 31 2020 05:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.46878 * 2 1 4 4 N 1.46499 * 109.47080 * 239.99265 * 2 1 3 5 5 C 1.34775 * 119.99299 * 85.00358 * 4 2 1 6 6 O 1.21276 * 120.00699 * 359.97438 * 5 4 2 7 7 C 1.50709 * 119.99599 * 179.97438 * 5 4 2 8 8 C 1.55238 * 110.58096 * 294.87565 * 7 5 4 9 9 C 1.54894 * 102.58338 * 203.33573 * 8 7 5 10 10 C 1.54266 * 104.31305 * 37.93170 * 9 8 7 11 11 C 1.53869 * 106.60031 * 336.32486 * 10 9 8 12 12 C 1.50705 * 109.46744 * 119.99575 * 2 1 3 13 13 O 1.21283 * 119.99988 * 120.00720 * 12 2 1 14 14 N 1.34773 * 120.00202 * 299.99745 * 12 2 1 15 15 C 1.46494 * 120.00120 * 180.02562 * 14 12 2 16 16 C 1.53008 * 109.47226 * 180.02562 * 15 14 12 17 17 C 1.50699 * 109.46955 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00148 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99908 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00200 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99693 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.47299 * 90.00281 * 21 19 17 23 23 H 1.48504 * 109.46757 * 209.99767 * 21 19 17 24 24 H 1.48495 * 109.47168 * 329.99696 * 21 19 17 25 25 H 1.08993 * 109.47204 * 60.00734 * 1 2 3 26 26 H 1.09006 * 109.47290 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47261 * 300.00416 * 1 2 3 28 28 H 0.96998 * 120.00025 * 264.99975 * 4 2 1 29 29 H 1.09006 * 110.43428 * 57.45967 * 7 5 4 30 30 H 1.08996 * 110.89448 * 85.05138 * 8 7 5 31 31 H 1.08993 * 110.76342 * 321.56803 * 8 7 5 32 32 H 1.09002 * 110.48891 * 279.18596 * 9 8 7 33 33 H 1.08998 * 110.48494 * 156.67683 * 9 8 7 34 34 H 1.09001 * 110.03084 * 95.60669 * 10 9 8 35 35 H 1.08996 * 110.03108 * 216.98559 * 10 9 8 36 36 H 1.08999 * 110.04012 * 119.28327 * 11 10 9 37 37 H 1.09006 * 110.02998 * 240.67078 * 11 10 9 38 38 H 0.97008 * 120.00056 * 0.02562 * 14 12 2 39 39 H 1.09006 * 109.46929 * 299.99948 * 15 14 12 40 40 H 1.09004 * 109.47213 * 60.00092 * 15 14 12 41 41 H 1.08996 * 109.46775 * 299.99833 * 16 15 14 42 42 H 1.08995 * 109.46971 * 59.99899 * 16 15 14 43 43 H 0.96999 * 120.00140 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6908 -1.1961 5 6 2.1470 -0.0184 -2.3570 6 8 1.8582 1.1582 -2.4117 7 6 2.6499 -0.7288 -3.5874 8 6 4.1205 -1.1856 -3.3910 9 6 4.6330 -1.3088 -4.8475 10 6 3.9719 -0.1265 -5.5856 11 6 2.7111 0.2423 -4.7844 12 6 2.0323 -0.7104 1.2306 13 8 2.7296 -1.6964 1.1194 14 7 1.7067 -0.2498 2.4546 15 6 2.1954 -0.9400 3.6508 16 6 1.6848 -0.2191 4.9001 17 6 2.1870 -0.9295 6.1305 18 1 2.8079 -1.8076 6.0315 19 6 1.8538 -0.4584 7.3828 20 7 2.2917 -1.0786 8.4566 21 14 0.7793 1.0600 7.5540 22 1 -0.6483 0.6537 7.5996 23 1 1.1304 1.7761 8.8067 24 1 1.0017 1.9574 6.3919 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 2.2490 -1.6319 -1.1524 29 1 2.0135 -1.5825 -3.8208 30 1 4.1637 -2.1493 -2.8835 31 1 4.6889 -0.4337 -2.8437 32 1 4.3169 -2.2561 -5.2843 33 1 5.7188 -1.2189 -4.8787 34 1 4.6551 0.7223 -5.6183 35 1 3.6983 -0.4243 -6.5978 36 1 2.7822 1.2700 -4.4282 37 1 1.8247 0.1239 -5.4078 38 1 1.1487 0.5387 2.5436 39 1 1.8324 -1.9678 3.6510 40 1 3.2854 -0.9396 3.6507 41 1 2.0474 0.8088 4.9000 42 1 0.5948 -0.2198 4.9000 43 1 2.0570 -0.7474 9.3376 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330401991.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:33 Heat of formation + Delta-G solvation = -104.175863 kcal Electronic energy + Delta-G solvation = -21904.297486 eV Core-core repulsion = 18562.112872 eV Total energy + Delta-G solvation = -3342.184614 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.59257 -39.39129 -37.39714 -35.36019 -34.88527 -32.93346 -31.52754 -30.01758 -29.07392 -28.83098 -25.54072 -24.14463 -22.10672 -20.91461 -20.77776 -20.19881 -19.84232 -18.03363 -17.03113 -16.66704 -16.23055 -15.97808 -15.43279 -15.19232 -14.80990 -14.31342 -14.16175 -13.92898 -13.67931 -13.64975 -13.27702 -12.67939 -12.58823 -12.49011 -12.24676 -11.76575 -11.58441 -11.54086 -11.46753 -11.41309 -11.25283 -11.09158 -10.72615 -10.45892 -10.35890 -10.00876 -9.95003 -9.68693 -9.39236 -9.23179 -8.72685 -8.62529 -6.14723 -4.15362 2.43288 2.71071 2.81956 3.22741 3.30873 3.31719 3.53535 4.16377 4.24571 4.34453 4.43645 4.69120 4.85591 4.92619 5.01333 5.03641 5.14614 5.18128 5.18227 5.24726 5.34187 5.42450 5.54388 5.60052 5.62677 5.77769 5.85183 5.93835 5.98368 6.00558 6.05249 6.12286 6.23371 6.48318 6.60035 7.05422 7.16885 7.34293 7.61535 7.71285 8.04825 8.32373 8.41243 8.89074 9.45127 10.98207 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.037779 B = 0.002757 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.971633 B =10153.982640 C =10582.570810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.122 3.878 3 H 0.112 0.888 4 N -0.710 5.710 5 C 0.523 3.477 6 O -0.543 6.543 7 C -0.113 4.113 8 C -0.115 4.115 9 C -0.124 4.124 10 C -0.125 4.125 11 C -0.112 4.112 12 C 0.504 3.496 13 O -0.544 6.544 14 N -0.718 5.718 15 C 0.130 3.870 16 C -0.022 4.022 17 C -0.524 4.524 18 H 0.076 0.924 19 C 0.069 3.931 20 N -0.898 5.898 21 Si 0.882 3.118 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.266 1.266 25 H 0.071 0.929 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.410 0.590 29 H 0.101 0.899 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.084 0.916 37 H 0.066 0.934 38 H 0.398 0.602 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.023 0.977 42 H 0.018 0.982 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.189 1.835 -26.408 26.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.013 3.987 3 H 0.130 0.870 4 N -0.363 5.363 5 C 0.310 3.690 6 O -0.420 6.420 7 C -0.135 4.135 8 C -0.153 4.153 9 C -0.161 4.161 10 C -0.163 4.163 11 C -0.150 4.150 12 C 0.289 3.711 13 O -0.422 6.422 14 N -0.368 5.368 15 C 0.008 3.992 16 C -0.060 4.060 17 C -0.562 4.562 18 H 0.094 0.906 19 C -0.133 4.133 20 N -0.536 5.536 21 Si 0.709 3.291 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.190 1.190 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.247 0.753 29 H 0.119 0.881 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.103 0.897 37 H 0.085 0.915 38 H 0.232 0.768 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.041 0.959 42 H 0.036 0.964 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.886 1.964 -26.283 26.371 hybrid contribution -0.764 0.659 0.490 1.121 sum -1.650 2.622 -25.792 25.978 Atomic orbital electron populations 1.22122 0.92876 1.03179 1.03534 1.20803 0.95683 0.98165 0.84034 0.86995 1.45782 1.67130 1.14924 1.08460 1.20578 0.76857 0.87171 0.84392 1.90677 1.50234 1.16077 1.85012 1.22229 0.98449 0.99567 0.93206 1.22564 0.93196 1.01895 0.97611 1.22354 1.00350 0.98624 0.94792 1.22151 0.96876 0.98319 0.98923 1.22073 0.97991 1.00310 0.94611 1.20471 0.80761 0.84952 0.84954 1.90681 1.38321 1.26523 1.86664 1.46279 1.52595 1.31839 1.06109 1.21567 0.99052 0.96291 0.82316 1.19802 0.96505 0.96648 0.93060 1.20896 1.32918 1.13826 0.88608 0.90624 1.25003 0.95646 0.96884 0.95748 1.69899 1.45325 1.40353 0.97986 0.86751 0.80985 0.83528 0.77807 1.20201 1.21236 1.19046 0.90988 0.91701 0.90757 0.75276 0.88107 0.90495 0.90828 0.91347 0.91326 0.91672 0.91734 0.89745 0.91516 0.76766 0.91759 0.91773 0.95918 0.96351 0.92503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.38 37.16 0.35 -1.26 16 2 C 0.12 1.47 2.98 -69.08 -0.21 1.26 16 3 H 0.11 1.38 7.58 -51.93 -0.39 0.98 16 4 N -0.71 -8.03 4.94 -54.93 -0.27 -8.30 16 5 C 0.52 6.02 7.10 -10.98 -0.08 5.94 16 6 O -0.54 -7.92 15.09 5.56 0.08 -7.84 16 7 C -0.11 -0.96 3.25 -89.92 -0.29 -1.25 16 8 C -0.11 -0.90 6.34 -24.55 -0.16 -1.06 16 9 C -0.12 -0.81 6.82 -25.07 -0.17 -0.98 16 10 C -0.13 -0.85 6.80 -25.62 -0.17 -1.03 16 11 C -0.11 -0.94 6.18 -25.62 -0.16 -1.10 16 12 C 0.50 7.62 7.22 -10.98 -0.08 7.54 16 13 O -0.54 -9.90 15.84 5.56 0.09 -9.82 16 14 N -0.72 -11.09 5.45 -60.29 -0.33 -11.42 16 15 C 0.13 2.53 5.61 -4.04 -0.02 2.51 16 16 C -0.02 -0.50 4.16 -27.88 -0.12 -0.61 16 17 C -0.52 -14.42 9.66 -34.44 -0.33 -14.75 16 18 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 19 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 20 N -0.90 -27.03 13.96 55.43 0.77 -26.26 16 21 Si 0.88 20.77 27.47 -169.99 -4.67 16.10 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.27 -5.90 6.54 56.52 0.37 -5.53 16 25 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.67 7.56 -51.93 -0.39 0.27 16 28 H 0.41 4.39 7.79 -40.82 -0.32 4.07 16 29 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.67 8.06 -51.93 -0.42 0.25 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 0.88 6.85 -51.93 -0.36 0.53 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.40 5.12 7.89 -40.82 -0.32 4.80 16 39 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 40 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.02 0.50 7.20 -51.93 -0.37 0.12 16 42 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 43 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 350.84 15.07 5.29 5.29 Total: -1.00 -32.52 350.84 -7.78 -40.29 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -7.20 Total: 4.88 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: -1.54 Total: -2.92 kcal Atomic # 7 Polarization: -46.15 SS G_CDS: 0.17 Total: -45.98 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: 0.17 Total: -17.66 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.67 Total: 16.10 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.52 -7.78 -40.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330401991.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.884 kcal (2) G-P(sol) polarization free energy of solvation -32.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds