Wall clock time and date at job start Tue Mar 31 2020 05:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.46878 * 2 1 4 4 N 1.46499 * 109.47080 * 239.99265 * 2 1 3 5 5 C 1.34775 * 119.99299 * 85.00358 * 4 2 1 6 6 O 1.21276 * 120.00699 * 359.97438 * 5 4 2 7 7 C 1.50709 * 119.99599 * 179.97438 * 5 4 2 8 8 C 1.55238 * 110.58096 * 294.87565 * 7 5 4 9 9 C 1.54894 * 102.58338 * 203.33573 * 8 7 5 10 10 C 1.54266 * 104.31305 * 37.93170 * 9 8 7 11 11 C 1.53869 * 106.60031 * 336.32486 * 10 9 8 12 12 C 1.50705 * 109.46744 * 119.99575 * 2 1 3 13 13 O 1.21283 * 119.99988 * 120.00720 * 12 2 1 14 14 N 1.34773 * 120.00202 * 299.99745 * 12 2 1 15 15 C 1.46494 * 120.00120 * 180.02562 * 14 12 2 16 16 C 1.53008 * 109.47226 * 180.02562 * 15 14 12 17 17 C 1.50699 * 109.46955 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00148 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99908 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00200 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99693 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.47299 * 90.00281 * 21 19 17 23 23 H 1.48504 * 109.46757 * 209.99767 * 21 19 17 24 24 H 1.48495 * 109.47168 * 329.99696 * 21 19 17 25 25 H 1.08993 * 109.47204 * 60.00734 * 1 2 3 26 26 H 1.09006 * 109.47290 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47261 * 300.00416 * 1 2 3 28 28 H 0.96998 * 120.00025 * 264.99975 * 4 2 1 29 29 H 1.09006 * 110.43428 * 57.45967 * 7 5 4 30 30 H 1.08996 * 110.89448 * 85.05138 * 8 7 5 31 31 H 1.08993 * 110.76342 * 321.56803 * 8 7 5 32 32 H 1.09002 * 110.48891 * 279.18596 * 9 8 7 33 33 H 1.08998 * 110.48494 * 156.67683 * 9 8 7 34 34 H 1.09001 * 110.03084 * 95.60669 * 10 9 8 35 35 H 1.08996 * 110.03108 * 216.98559 * 10 9 8 36 36 H 1.08999 * 110.04012 * 119.28327 * 11 10 9 37 37 H 1.09006 * 110.02998 * 240.67078 * 11 10 9 38 38 H 0.97008 * 120.00056 * 0.02562 * 14 12 2 39 39 H 1.09006 * 109.46929 * 299.99948 * 15 14 12 40 40 H 1.09004 * 109.47213 * 60.00092 * 15 14 12 41 41 H 1.08996 * 109.46775 * 299.99833 * 16 15 14 42 42 H 1.08995 * 109.46971 * 59.99899 * 16 15 14 43 43 H 0.96999 * 120.00140 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6908 -1.1961 5 6 2.1470 -0.0184 -2.3570 6 8 1.8582 1.1582 -2.4117 7 6 2.6499 -0.7288 -3.5874 8 6 4.1205 -1.1856 -3.3910 9 6 4.6330 -1.3088 -4.8475 10 6 3.9719 -0.1265 -5.5856 11 6 2.7111 0.2423 -4.7844 12 6 2.0323 -0.7104 1.2306 13 8 2.7296 -1.6964 1.1194 14 7 1.7067 -0.2498 2.4546 15 6 2.1954 -0.9400 3.6508 16 6 1.6848 -0.2191 4.9001 17 6 2.1870 -0.9295 6.1305 18 1 2.8079 -1.8076 6.0315 19 6 1.8538 -0.4584 7.3828 20 7 2.2917 -1.0786 8.4566 21 14 0.7793 1.0600 7.5540 22 1 -0.6483 0.6537 7.5996 23 1 1.1304 1.7761 8.8067 24 1 1.0017 1.9574 6.3919 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 2.2490 -1.6319 -1.1524 29 1 2.0135 -1.5825 -3.8208 30 1 4.1637 -2.1493 -2.8835 31 1 4.6889 -0.4337 -2.8437 32 1 4.3169 -2.2561 -5.2843 33 1 5.7188 -1.2189 -4.8787 34 1 4.6551 0.7223 -5.6183 35 1 3.6983 -0.4243 -6.5978 36 1 2.7822 1.2700 -4.4282 37 1 1.8247 0.1239 -5.4078 38 1 1.1487 0.5387 2.5436 39 1 1.8324 -1.9678 3.6510 40 1 3.2854 -0.9396 3.6507 41 1 2.0474 0.8088 4.9000 42 1 0.5948 -0.2198 4.9000 43 1 2.0570 -0.7474 9.3376 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330401991.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:32 Heat of formation + Delta-G solvation = -127.231005 kcal Electronic energy + Delta-G solvation = -21905.297232 eV Core-core repulsion = 18562.112872 eV Total energy + Delta-G solvation = -3343.184360 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.59907 -40.51716 -38.12859 -36.79460 -36.03037 -34.85168 -32.75456 -31.48247 -29.76838 -29.49722 -27.12357 -25.35937 -23.11135 -22.57111 -21.46556 -21.27035 -20.71905 -19.04178 -18.93460 -17.74200 -17.36829 -16.84824 -16.55953 -16.31392 -16.15959 -15.82497 -15.33998 -15.14654 -14.78549 -14.52279 -14.41406 -14.28457 -13.66411 -13.41422 -13.31237 -13.04510 -12.94449 -12.67027 -12.22864 -12.18559 -12.17251 -12.06270 -11.98509 -11.76999 -11.70550 -11.51893 -11.29285 -10.98802 -10.83934 -10.79003 -10.26700 -10.10536 -8.30228 -6.37421 1.39457 1.41920 1.45117 1.52873 1.55003 1.81369 2.36597 2.39990 3.05107 3.47417 3.55493 3.63871 3.81278 3.98258 4.07085 4.23683 4.33342 4.42201 4.47406 4.52150 4.58493 4.60900 4.64588 4.74594 4.76653 4.79364 4.95866 5.08343 5.10400 5.15203 5.20154 5.26070 5.29242 5.38140 5.40254 5.41391 5.48775 5.62376 6.21329 6.44289 6.47646 6.70604 7.11136 7.14879 7.27272 8.86407 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.037779 B = 0.002757 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.971633 B =10153.982640 C =10582.570810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.130 3.870 3 H 0.113 0.887 4 N -0.708 5.708 5 C 0.522 3.478 6 O -0.576 6.576 7 C -0.110 4.110 8 C -0.115 4.115 9 C -0.120 4.120 10 C -0.123 4.123 11 C -0.112 4.112 12 C 0.508 3.492 13 O -0.576 6.576 14 N -0.709 5.709 15 C 0.145 3.855 16 C -0.015 4.015 17 C -0.538 4.538 18 H 0.030 0.970 19 C 0.004 3.996 20 N -0.950 5.950 21 Si 0.957 3.043 22 H -0.264 1.264 23 H -0.289 1.289 24 H -0.237 1.237 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.090 0.910 28 H 0.414 0.586 29 H 0.124 0.876 30 H 0.084 0.916 31 H 0.055 0.945 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.415 0.585 39 H 0.050 0.950 40 H 0.045 0.955 41 H 0.036 0.964 42 H 0.038 0.962 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.700 3.018 -28.349 28.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.021 3.979 3 H 0.131 0.869 4 N -0.361 5.361 5 C 0.311 3.689 6 O -0.456 6.456 7 C -0.131 4.131 8 C -0.153 4.153 9 C -0.157 4.157 10 C -0.160 4.160 11 C -0.150 4.150 12 C 0.294 3.706 13 O -0.456 6.456 14 N -0.360 5.360 15 C 0.022 3.978 16 C -0.052 4.052 17 C -0.577 4.577 18 H 0.048 0.952 19 C -0.193 4.193 20 N -0.590 5.590 21 Si 0.780 3.220 22 H -0.189 1.189 23 H -0.215 1.215 24 H -0.160 1.160 25 H 0.092 0.908 26 H 0.085 0.915 27 H 0.108 0.892 28 H 0.252 0.748 29 H 0.142 0.858 30 H 0.103 0.897 31 H 0.073 0.927 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.077 0.923 37 H 0.094 0.906 38 H 0.252 0.748 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.054 0.946 42 H 0.056 0.944 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.407 3.150 -28.261 28.537 hybrid contribution -0.213 0.202 1.092 1.131 sum -2.620 3.352 -27.169 27.500 Atomic orbital electron populations 1.22102 0.90942 1.03617 1.04418 1.20758 0.97000 0.97515 0.82640 0.86918 1.45833 1.66938 1.15069 1.08270 1.21102 0.76016 0.86818 0.85001 1.90662 1.51773 1.17572 1.85558 1.22309 0.99077 0.99993 0.91679 1.22570 0.92530 1.01624 0.98593 1.22358 1.00594 0.99150 0.93600 1.22149 0.96022 0.98378 0.99500 1.22067 0.99285 0.98836 0.94851 1.20970 0.79809 0.84404 0.85460 1.90672 1.39694 1.28116 1.87138 1.45998 1.52801 1.32171 1.05042 1.21074 0.97843 0.95720 0.83201 1.19669 0.97390 0.96623 0.91553 1.21249 1.32251 1.12935 0.91222 0.95176 1.26074 0.97338 1.00822 0.95113 1.70071 1.47422 1.42766 0.98785 0.85560 0.78873 0.78991 0.78590 1.18922 1.21462 1.15963 0.90834 0.91472 0.89150 0.74833 0.85795 0.89730 0.92650 0.89858 0.90911 0.92083 0.90204 0.92257 0.90590 0.74814 0.93196 0.93654 0.94591 0.94399 0.92359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 9.38 71.98 0.68 -2.05 16 2 C 0.13 2.91 2.98 44.25 0.13 3.05 16 3 H 0.11 2.59 7.58 -2.39 -0.02 2.57 16 4 N -0.71 -15.17 4.94 -446.10 -2.20 -17.37 16 5 C 0.52 11.50 7.10 87.66 0.62 12.13 16 6 O -0.58 -16.50 15.09 -3.02 -0.05 -16.55 16 7 C -0.11 -1.70 3.25 -10.34 -0.03 -1.73 16 8 C -0.12 -1.66 6.34 32.01 0.20 -1.46 16 9 C -0.12 -1.31 6.82 31.67 0.22 -1.10 16 10 C -0.12 -1.46 6.80 31.32 0.21 -1.25 16 11 C -0.11 -1.75 6.18 31.32 0.19 -1.56 16 12 C 0.51 14.69 7.22 87.66 0.63 15.32 16 13 O -0.58 -20.75 15.84 -3.04 -0.05 -20.80 16 14 N -0.71 -20.61 5.45 -463.04 -2.52 -23.14 16 15 C 0.15 5.61 5.61 86.38 0.48 6.10 16 16 C -0.01 -0.63 4.16 29.85 0.12 -0.50 16 17 C -0.54 -30.09 9.66 25.60 0.25 -29.85 16 18 H 0.03 1.89 7.99 -2.91 -0.02 1.87 16 19 C 0.00 0.21 5.47 84.66 0.46 0.67 16 20 N -0.95 -58.71 13.96 21.45 0.30 -58.41 16 21 Si 0.96 41.71 27.47 68.60 1.88 43.60 16 22 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 23 H -0.29 -12.61 7.11 99.48 0.71 -11.91 16 24 H -0.24 -9.14 6.54 99.48 0.65 -8.48 16 25 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 27 H 0.09 1.33 7.56 -2.39 -0.02 1.31 16 28 H 0.41 8.37 7.79 -92.71 -0.72 7.65 16 29 H 0.12 1.37 8.14 -2.38 -0.02 1.35 16 30 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.05 0.99 8.06 -2.39 -0.02 0.97 16 32 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.06 1.23 6.85 -2.39 -0.02 1.22 16 37 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 38 H 0.41 9.40 7.89 -92.70 -0.73 8.67 16 39 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 40 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 41 H 0.04 1.46 7.20 -2.39 -0.02 1.45 16 42 H 0.04 1.50 7.57 -2.39 -0.02 1.48 16 43 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -72.10 350.84 1.03 -71.07 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: -0.50 Total: 23.82 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: 4.17 Total: -2.22 kcal Atomic # 7 Polarization: -94.49 SS G_CDS: -4.43 Total: -98.92 kcal Atomic # 8 Polarization: -37.25 SS G_CDS: -0.09 Total: -37.35 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 1.88 Total: 43.60 kcal Total: -72.10 1.03 -71.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330401991.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.166 kcal (2) G-P(sol) polarization free energy of solvation -72.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds