Wall clock time and date at job start Tue Mar 31 2020 05:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47077 * 2 1 4 4 N 1.46492 * 109.47213 * 120.00217 * 2 1 3 5 5 C 1.34771 * 120.00121 * 275.00112 * 4 2 1 6 6 O 1.21284 * 120.00285 * 359.97438 * 5 4 2 7 7 C 1.50701 * 120.00123 * 180.02562 * 5 4 2 8 8 C 1.54272 * 110.02855 * 297.90244 * 7 5 4 9 9 C 1.54970 * 104.15737 * 217.13569 * 8 7 5 10 10 C 1.54888 * 102.77641 * 37.89139 * 9 8 7 11 11 C 1.53880 * 110.03400 * 180.69073 * 7 5 4 12 12 C 1.50703 * 109.46771 * 240.00448 * 2 1 3 13 13 O 1.21283 * 119.99488 * 239.99768 * 12 2 1 14 14 N 1.34777 * 120.00290 * 60.00208 * 12 2 1 15 15 C 1.46498 * 119.99828 * 180.27728 * 14 12 2 16 16 C 1.52996 * 109.47059 * 179.72339 * 15 14 12 17 17 C 1.50697 * 109.47491 * 179.97438 * 16 15 14 18 18 H 1.08002 * 119.99965 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00490 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99545 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00173 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47199 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47080 * 119.99932 * 21 19 17 24 24 H 1.48498 * 109.47127 * 239.99826 * 21 19 17 25 25 H 1.08998 * 109.46818 * 300.00015 * 1 2 3 26 26 H 1.09008 * 109.47076 * 59.99403 * 1 2 3 27 27 H 1.08992 * 109.47503 * 179.97438 * 1 2 3 28 28 H 0.97006 * 119.99994 * 94.99867 * 4 2 1 29 29 H 1.08998 * 110.02165 * 59.29700 * 7 5 4 30 30 H 1.08993 * 110.48509 * 335.78069 * 8 7 5 31 31 H 1.08998 * 110.48227 * 98.43516 * 8 7 5 32 32 H 1.08995 * 110.72100 * 279.57303 * 9 8 7 33 33 H 1.08997 * 110.92022 * 156.29649 * 9 8 7 34 34 H 1.09004 * 110.48427 * 203.40055 * 10 9 8 35 35 H 1.09002 * 110.59871 * 80.81946 * 10 9 8 36 36 H 1.09007 * 110.02705 * 238.56855 * 11 7 5 37 37 H 1.09005 * 110.02973 * 359.97438 * 11 7 5 38 38 H 0.97001 * 119.99727 * 359.97438 * 14 12 2 39 39 H 1.09004 * 109.46963 * 299.72135 * 15 14 12 40 40 H 1.08994 * 109.47567 * 59.72287 * 15 14 12 41 41 H 1.09004 * 109.47066 * 299.99732 * 16 15 14 42 42 H 1.09000 * 109.47665 * 59.99541 * 16 15 14 43 43 H 0.97004 * 119.99855 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1471 -0.0184 2.3570 6 8 1.8590 1.1585 2.4115 7 6 2.6500 -0.7287 3.5873 8 6 1.6793 -1.8629 3.9765 9 6 1.6764 -1.8442 5.5261 10 6 1.7424 -0.3311 5.8505 11 6 2.6904 0.2447 4.7785 12 6 2.0323 -0.7103 -1.2306 13 8 2.7295 -1.6964 -1.1193 14 7 1.7067 -0.2498 -2.4546 15 6 2.1900 -0.9439 -3.6508 16 6 1.6754 -0.2259 -4.9000 17 6 2.1730 -0.9394 -6.1305 18 1 2.7945 -1.8171 -6.0315 19 6 1.8349 -0.4719 -7.3827 20 7 1.0777 0.5966 -7.5033 21 14 2.4524 -1.3561 -8.9079 22 1 3.2791 -2.5216 -8.5039 23 1 1.2946 -1.8256 -9.7107 24 1 3.2737 -0.4243 -9.7218 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5140 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 2.2490 -1.6318 1.1525 29 1 3.6445 -1.1350 3.4033 30 1 0.6804 -1.6592 3.5908 31 1 2.0443 -2.8210 3.6065 32 1 2.5508 -2.3623 5.9196 33 1 0.7596 -2.2838 5.9188 34 1 2.1529 -0.1724 6.8478 35 1 0.7544 0.1220 5.7693 36 1 3.7045 0.3100 5.1729 37 1 2.3467 1.2310 4.4665 38 1 1.1488 0.5387 -2.5436 39 1 3.2800 -0.9444 -3.6551 40 1 1.8262 -1.9714 -3.6466 41 1 0.5854 -0.2253 -4.8957 42 1 2.0392 0.8017 -4.9043 43 1 0.8395 0.9254 -8.3843 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330401992.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:35 Heat of formation + Delta-G solvation = -107.816110 kcal Electronic energy + Delta-G solvation = -21867.443591 eV Core-core repulsion = 18525.101124 eV Total energy + Delta-G solvation = -3342.342467 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.58445 -39.34035 -37.31901 -35.25850 -34.80232 -32.97383 -31.43785 -29.63650 -28.99798 -28.75925 -25.34907 -24.10525 -22.08724 -21.09337 -20.92400 -20.11950 -19.74339 -17.94841 -16.83674 -16.57437 -16.03412 -15.77597 -15.43336 -15.04604 -14.85845 -14.55206 -14.26450 -13.74758 -13.63173 -13.49591 -13.16576 -12.63360 -12.40596 -12.34154 -11.96384 -11.69929 -11.60719 -11.41823 -11.38446 -11.25289 -11.08863 -11.08166 -10.78793 -10.66961 -10.40750 -9.90560 -9.90406 -9.57521 -9.34089 -9.14212 -8.64688 -8.42867 -6.13189 -4.16295 2.48482 2.78990 2.87795 3.25828 3.33577 3.38117 3.63151 4.17144 4.28634 4.38140 4.44651 4.77711 4.91048 5.00598 5.06529 5.09151 5.14325 5.19458 5.24040 5.31486 5.36200 5.50223 5.53507 5.62344 5.66819 5.79707 5.85331 5.99741 6.01695 6.07156 6.21128 6.26555 6.32106 6.65106 6.77156 7.39036 7.45801 7.55795 7.82126 7.85921 8.09506 8.21683 8.44980 8.89726 9.48867 10.98380 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.049691 B = 0.002532 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.344962 B =11057.464263 C =11280.712314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.122 3.878 3 H 0.112 0.888 4 N -0.709 5.709 5 C 0.522 3.478 6 O -0.542 6.542 7 C -0.113 4.113 8 C -0.116 4.116 9 C -0.124 4.124 10 C -0.124 4.124 11 C -0.119 4.119 12 C 0.503 3.497 13 O -0.549 6.549 14 N -0.714 5.714 15 C 0.121 3.879 16 C 0.012 3.988 17 C -0.522 4.522 18 H 0.060 0.940 19 C 0.058 3.942 20 N -0.893 5.893 21 Si 0.897 3.103 22 H -0.271 1.271 23 H -0.283 1.283 24 H -0.283 1.283 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.063 0.937 28 H 0.410 0.590 29 H 0.100 0.900 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.090 0.910 38 H 0.400 0.600 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.023 0.977 42 H 0.023 0.977 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.648 -2.377 24.377 24.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.013 3.987 3 H 0.130 0.870 4 N -0.363 5.363 5 C 0.309 3.691 6 O -0.419 6.419 7 C -0.134 4.134 8 C -0.154 4.154 9 C -0.161 4.161 10 C -0.162 4.162 11 C -0.157 4.157 12 C 0.288 3.712 13 O -0.427 6.427 14 N -0.363 5.363 15 C -0.001 4.001 16 C -0.026 4.026 17 C -0.561 4.561 18 H 0.078 0.922 19 C -0.143 4.143 20 N -0.532 5.532 21 Si 0.725 3.275 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.209 1.209 25 H 0.090 0.910 26 H 0.094 0.906 27 H 0.082 0.918 28 H 0.247 0.753 29 H 0.118 0.882 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.109 0.891 38 H 0.234 0.766 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.042 0.958 42 H 0.041 0.959 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.421 -2.131 24.310 24.407 hybrid contribution 0.170 -0.464 -1.157 1.259 sum -0.251 -2.595 23.153 23.299 Atomic orbital electron populations 1.22119 0.92866 1.03119 1.03583 1.20810 0.95700 0.98159 0.84007 0.86990 1.45767 1.67163 1.14890 1.08431 1.20604 0.77045 0.87131 0.84363 1.90664 1.50410 1.16057 1.84774 1.21951 1.01017 0.97112 0.93335 1.22384 0.99147 0.97284 0.96575 1.22510 1.01970 0.96670 0.94977 1.22363 0.99954 0.95332 0.98533 1.22172 1.00098 1.00086 0.93346 1.20480 0.80787 0.84935 0.85044 1.90664 1.38628 1.26722 1.86734 1.46289 1.52421 1.31665 1.05973 1.21778 0.98701 0.96248 0.83335 1.19338 0.96997 0.96139 0.90108 1.21069 1.31986 1.12608 0.90396 0.92198 1.25004 0.94989 0.95029 0.99311 1.69964 1.36505 1.23006 1.23717 0.86450 0.78660 0.79713 0.82704 1.19596 1.20915 1.20908 0.91047 0.90630 0.91778 0.75321 0.88208 0.91046 0.90675 0.91236 0.91325 0.91560 0.91526 0.91443 0.89133 0.76573 0.92404 0.92370 0.95843 0.95852 0.92849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 9.38 37.16 0.35 -1.38 16 2 C 0.12 1.56 2.98 -69.08 -0.21 1.35 16 3 H 0.11 1.46 7.58 -51.93 -0.39 1.07 16 4 N -0.71 -8.40 4.89 -54.94 -0.27 -8.67 16 5 C 0.52 6.23 6.96 -10.99 -0.08 6.15 16 6 O -0.54 -8.12 14.87 5.55 0.08 -8.03 16 7 C -0.11 -1.00 3.30 -90.65 -0.30 -1.29 16 8 C -0.12 -0.85 6.30 -25.03 -0.16 -1.00 16 9 C -0.12 -0.79 6.91 -24.69 -0.17 -0.96 16 10 C -0.12 -0.89 6.83 -25.08 -0.17 -1.06 16 11 C -0.12 -1.03 6.40 -25.61 -0.16 -1.20 16 12 C 0.50 8.01 7.22 -10.98 -0.08 7.93 16 13 O -0.55 -10.36 15.84 5.55 0.09 -10.27 16 14 N -0.71 -11.82 5.45 -60.30 -0.33 -12.15 16 15 C 0.12 2.49 5.61 -4.04 -0.02 2.46 16 16 C 0.01 0.28 5.09 -27.89 -0.14 0.14 16 17 C -0.52 -14.24 9.11 -34.44 -0.31 -14.55 16 18 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -25.82 13.29 55.43 0.74 -25.08 16 21 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 22 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 25 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.07 0.75 7.56 -51.92 -0.39 0.36 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.41 4.59 7.78 -40.82 -0.32 4.28 16 29 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.57 7.85 -51.93 -0.41 0.16 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 37 H 0.09 0.98 6.39 -51.93 -0.33 0.65 16 38 H 0.40 5.75 7.89 -40.82 -0.32 5.43 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 353.68 15.07 5.33 5.33 Total: -1.00 -31.79 353.68 -8.13 -39.92 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -7.20 Total: 4.70 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -1.55 Total: -1.88 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: 0.14 Total: -45.89 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: 0.17 Total: -18.31 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.79 -8.13 -39.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330401992.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.896 kcal (2) G-P(sol) polarization free energy of solvation -31.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds