Wall clock time and date at job start Tue Mar 31 2020 05:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47077 * 2 1 4 4 N 1.46492 * 109.47213 * 120.00217 * 2 1 3 5 5 C 1.34771 * 120.00121 * 275.00112 * 4 2 1 6 6 O 1.21284 * 120.00285 * 359.97438 * 5 4 2 7 7 C 1.50701 * 120.00123 * 180.02562 * 5 4 2 8 8 C 1.54272 * 110.02855 * 297.90244 * 7 5 4 9 9 C 1.54970 * 104.15737 * 217.13569 * 8 7 5 10 10 C 1.54888 * 102.77641 * 37.89139 * 9 8 7 11 11 C 1.53880 * 110.03400 * 180.69073 * 7 5 4 12 12 C 1.50703 * 109.46771 * 240.00448 * 2 1 3 13 13 O 1.21283 * 119.99488 * 239.99768 * 12 2 1 14 14 N 1.34777 * 120.00290 * 60.00208 * 12 2 1 15 15 C 1.46498 * 119.99828 * 180.27728 * 14 12 2 16 16 C 1.52996 * 109.47059 * 179.72339 * 15 14 12 17 17 C 1.50697 * 109.47491 * 179.97438 * 16 15 14 18 18 H 1.08002 * 119.99965 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00490 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99545 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00173 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47199 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47080 * 119.99932 * 21 19 17 24 24 H 1.48498 * 109.47127 * 239.99826 * 21 19 17 25 25 H 1.08998 * 109.46818 * 300.00015 * 1 2 3 26 26 H 1.09008 * 109.47076 * 59.99403 * 1 2 3 27 27 H 1.08992 * 109.47503 * 179.97438 * 1 2 3 28 28 H 0.97006 * 119.99994 * 94.99867 * 4 2 1 29 29 H 1.08998 * 110.02165 * 59.29700 * 7 5 4 30 30 H 1.08993 * 110.48509 * 335.78069 * 8 7 5 31 31 H 1.08998 * 110.48227 * 98.43516 * 8 7 5 32 32 H 1.08995 * 110.72100 * 279.57303 * 9 8 7 33 33 H 1.08997 * 110.92022 * 156.29649 * 9 8 7 34 34 H 1.09004 * 110.48427 * 203.40055 * 10 9 8 35 35 H 1.09002 * 110.59871 * 80.81946 * 10 9 8 36 36 H 1.09007 * 110.02705 * 238.56855 * 11 7 5 37 37 H 1.09005 * 110.02973 * 359.97438 * 11 7 5 38 38 H 0.97001 * 119.99727 * 359.97438 * 14 12 2 39 39 H 1.09004 * 109.46963 * 299.72135 * 15 14 12 40 40 H 1.08994 * 109.47567 * 59.72287 * 15 14 12 41 41 H 1.09004 * 109.47066 * 299.99732 * 16 15 14 42 42 H 1.09000 * 109.47665 * 59.99541 * 16 15 14 43 43 H 0.97004 * 119.99855 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1471 -0.0184 2.3570 6 8 1.8590 1.1585 2.4115 7 6 2.6500 -0.7287 3.5873 8 6 1.6793 -1.8629 3.9765 9 6 1.6764 -1.8442 5.5261 10 6 1.7424 -0.3311 5.8505 11 6 2.6904 0.2447 4.7785 12 6 2.0323 -0.7103 -1.2306 13 8 2.7295 -1.6964 -1.1193 14 7 1.7067 -0.2498 -2.4546 15 6 2.1900 -0.9439 -3.6508 16 6 1.6754 -0.2259 -4.9000 17 6 2.1730 -0.9394 -6.1305 18 1 2.7945 -1.8171 -6.0315 19 6 1.8349 -0.4719 -7.3827 20 7 1.0777 0.5966 -7.5033 21 14 2.4524 -1.3561 -8.9079 22 1 3.2791 -2.5216 -8.5039 23 1 1.2946 -1.8256 -9.7107 24 1 3.2737 -0.4243 -9.7218 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5140 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 2.2490 -1.6318 1.1525 29 1 3.6445 -1.1350 3.4033 30 1 0.6804 -1.6592 3.5908 31 1 2.0443 -2.8210 3.6065 32 1 2.5508 -2.3623 5.9196 33 1 0.7596 -2.2838 5.9188 34 1 2.1529 -0.1724 6.8478 35 1 0.7544 0.1220 5.7693 36 1 3.7045 0.3100 5.1729 37 1 2.3467 1.2310 4.4665 38 1 1.1488 0.5387 -2.5436 39 1 3.2800 -0.9444 -3.6551 40 1 1.8262 -1.9714 -3.6466 41 1 0.5854 -0.2253 -4.8957 42 1 2.0392 0.8017 -4.9043 43 1 0.8395 0.9254 -8.3843 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330401992.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:34 Heat of formation + Delta-G solvation = -129.050296 kcal Electronic energy + Delta-G solvation = -21868.364374 eV Core-core repulsion = 18525.101124 eV Total energy + Delta-G solvation = -3343.263250 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.62561 -40.53774 -38.07372 -36.75150 -36.03683 -34.88567 -32.61379 -31.17464 -29.73576 -29.46983 -27.02404 -25.41415 -23.25795 -22.61775 -21.59254 -21.28718 -20.67490 -18.92892 -18.51886 -17.87801 -17.32726 -16.74403 -16.56305 -16.40097 -16.22096 -15.81232 -15.45993 -15.08836 -14.56702 -14.45470 -14.31167 -14.17783 -13.75423 -13.40510 -13.21272 -12.96378 -12.74748 -12.63566 -12.52832 -12.26421 -12.25709 -12.01220 -11.93094 -11.68814 -11.65045 -11.44904 -11.39967 -10.97196 -10.80972 -10.61845 -10.27033 -10.07697 -8.24744 -6.34970 1.40736 1.42030 1.45204 1.54384 1.56432 1.81613 2.35188 2.47539 3.10394 3.47470 3.56885 3.67493 3.80129 3.98936 4.05372 4.25552 4.45099 4.48254 4.48459 4.55172 4.56710 4.63774 4.69607 4.75311 4.81882 4.84665 4.99242 5.10416 5.11206 5.21724 5.23844 5.25172 5.27369 5.44442 5.46833 5.48397 5.57650 5.77835 6.15004 6.44633 6.48689 6.78692 7.09983 7.15110 7.34515 8.87198 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.049691 B = 0.002532 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.344962 B =11057.464263 C =11280.712314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.130 3.870 3 H 0.111 0.889 4 N -0.707 5.707 5 C 0.520 3.480 6 O -0.576 6.576 7 C -0.110 4.110 8 C -0.114 4.114 9 C -0.119 4.119 10 C -0.123 4.123 11 C -0.121 4.121 12 C 0.508 3.492 13 O -0.576 6.576 14 N -0.709 5.709 15 C 0.141 3.859 16 C 0.021 3.979 17 C -0.545 4.545 18 H 0.060 0.940 19 C 0.006 3.994 20 N -0.926 5.926 21 Si 0.965 3.035 22 H -0.265 1.265 23 H -0.277 1.277 24 H -0.278 1.278 25 H 0.073 0.927 26 H 0.085 0.915 27 H 0.067 0.933 28 H 0.415 0.585 29 H 0.115 0.885 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.057 0.943 36 H 0.079 0.921 37 H 0.064 0.936 38 H 0.412 0.588 39 H 0.048 0.952 40 H 0.052 0.948 41 H 0.011 0.989 42 H 0.008 0.992 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.392 -3.526 25.232 25.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.021 3.979 3 H 0.129 0.871 4 N -0.360 5.360 5 C 0.309 3.691 6 O -0.455 6.455 7 C -0.132 4.132 8 C -0.152 4.152 9 C -0.156 4.156 10 C -0.161 4.161 11 C -0.159 4.159 12 C 0.294 3.706 13 O -0.457 6.457 14 N -0.360 5.360 15 C 0.018 3.982 16 C -0.017 4.017 17 C -0.583 4.583 18 H 0.078 0.922 19 C -0.193 4.193 20 N -0.566 5.566 21 Si 0.789 3.211 22 H -0.189 1.189 23 H -0.203 1.203 24 H -0.204 1.204 25 H 0.092 0.908 26 H 0.104 0.896 27 H 0.086 0.914 28 H 0.252 0.748 29 H 0.133 0.867 30 H 0.081 0.919 31 H 0.107 0.893 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.248 0.752 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.029 0.971 42 H 0.026 0.974 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.173 -3.282 25.186 25.400 hybrid contribution 0.094 -0.075 -1.392 1.397 sum -0.080 -3.357 23.795 24.030 Atomic orbital electron populations 1.22087 0.91159 1.03581 1.04202 1.20726 0.96862 0.97499 0.82781 0.87094 1.45799 1.67011 1.15045 1.08130 1.21176 0.76205 0.86780 0.84961 1.90653 1.51937 1.17617 1.85314 1.22041 1.02004 0.97399 0.91707 1.22406 0.98214 0.97155 0.97429 1.22513 1.03029 0.95999 0.94083 1.22364 0.99129 0.95918 0.98688 1.22177 1.01094 0.98784 0.93819 1.20938 0.79853 0.84421 0.85382 1.90651 1.39796 1.28072 1.87141 1.46082 1.52710 1.31946 1.05278 1.21269 0.97848 0.95689 0.83416 1.19154 0.96019 0.95367 0.91149 1.21490 1.32089 1.12893 0.91829 0.92212 1.25873 0.95115 0.95763 1.02537 1.70064 1.37555 1.24332 1.24656 0.85400 0.78264 0.78668 0.78737 1.18888 1.20265 1.20382 0.90838 0.89607 0.91375 0.74786 0.86736 0.91947 0.89251 0.89976 0.90458 0.90259 0.92452 0.90266 0.91731 0.75195 0.93383 0.92938 0.97070 0.97400 0.92571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 9.38 71.98 0.68 -2.45 16 2 C 0.13 3.21 2.98 44.25 0.13 3.34 16 3 H 0.11 2.83 7.58 -2.39 -0.02 2.82 16 4 N -0.71 -16.09 4.89 -446.11 -2.18 -18.27 16 5 C 0.52 12.08 6.96 87.66 0.61 12.70 16 6 O -0.58 -17.27 14.87 -3.04 -0.05 -17.31 16 7 C -0.11 -1.80 3.30 -10.81 -0.04 -1.83 16 8 C -0.11 -1.44 6.30 31.70 0.20 -1.24 16 9 C -0.12 -1.23 6.91 31.91 0.22 -1.01 16 10 C -0.12 -1.58 6.83 31.67 0.22 -1.36 16 11 C -0.12 -1.98 6.40 31.32 0.20 -1.78 16 12 C 0.51 15.80 7.22 87.66 0.63 16.44 16 13 O -0.58 -21.38 15.84 -3.04 -0.05 -21.42 16 14 N -0.71 -23.17 5.45 -463.07 -2.52 -25.69 16 15 C 0.14 5.79 5.61 86.38 0.48 6.28 16 16 C 0.02 1.01 5.09 29.85 0.15 1.16 16 17 C -0.54 -29.83 9.11 25.60 0.23 -29.60 16 18 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 19 C 0.01 0.33 5.46 84.65 0.46 0.79 16 20 N -0.93 -53.78 13.29 21.45 0.28 -53.49 16 21 Si 0.96 43.12 29.54 68.60 2.03 45.14 16 22 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 23 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 24 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 25 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.09 1.59 7.56 -2.38 -0.02 1.57 16 27 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.41 8.80 7.78 -92.70 -0.72 8.08 16 29 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.06 0.91 7.85 -2.39 -0.02 0.89 16 31 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 35 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 37 H 0.06 1.42 6.39 -2.38 -0.02 1.40 16 38 H 0.41 11.60 7.89 -92.71 -0.73 10.87 16 39 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 40 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16 42 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 43 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -67.50 353.68 1.25 -66.25 By element: Atomic # 1 Polarization: 23.81 SS G_CDS: -0.45 Total: 23.36 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: 4.18 Total: 1.42 kcal Atomic # 7 Polarization: -93.03 SS G_CDS: -4.42 Total: -97.45 kcal Atomic # 8 Polarization: -38.64 SS G_CDS: -0.09 Total: -38.74 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal Total: -67.50 1.25 -66.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330401992.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.797 kcal (2) G-P(sol) polarization free energy of solvation -67.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds