Wall clock time and date at job start Tue Mar 31 2020 06:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.47388 * 2 1 4 4 C 1.37092 * 119.99688 * 263.60330 * 3 2 1 5 5 H 1.08000 * 119.99509 * 195.50163 * 4 3 2 6 6 C 1.38950 * 120.00460 * 15.49981 * 4 3 2 7 7 N 1.31408 * 119.99785 * 11.65556 * 6 4 3 8 8 Si 1.86799 * 120.00030 * 191.65752 * 6 4 3 9 9 H 1.48497 * 109.47400 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47187 * 119.99868 * 8 6 4 11 11 H 1.48500 * 109.46814 * 239.99937 * 8 6 4 12 12 C 1.34780 * 119.99870 * 83.60295 * 3 2 1 13 13 O 1.21291 * 119.99878 * 5.36888 * 12 3 2 14 14 C 1.50698 * 119.99554 * 185.37383 * 12 3 2 15 15 H 1.08998 * 109.47461 * 48.30077 * 14 12 3 16 16 C 1.53002 * 109.47068 * 288.29925 * 14 12 3 17 17 N 1.46507 * 109.46988 * 168.30424 * 14 12 3 18 18 C 1.34770 * 119.99891 * 204.99888 * 17 14 12 19 19 O 1.21285 * 120.00012 * 359.97438 * 18 17 14 20 20 C 1.50701 * 119.99907 * 179.97438 * 18 17 14 21 21 C 1.55236 * 110.58298 * 294.87576 * 20 18 17 22 22 C 1.54889 * 102.58814 * 203.33895 * 21 20 18 23 23 C 1.54268 * 104.31382 * 37.92807 * 22 21 20 24 24 C 1.53874 * 106.60134 * 336.32627 * 23 22 21 25 25 H 1.09001 * 109.47064 * 53.00449 * 1 2 3 26 26 H 1.08993 * 109.47151 * 173.00535 * 1 2 3 27 27 H 1.09003 * 109.46811 * 293.00523 * 1 2 3 28 28 H 1.09001 * 109.46794 * 239.99280 * 2 1 3 29 29 H 1.09008 * 109.46850 * 119.99985 * 2 1 3 30 30 H 0.96999 * 119.99845 * 180.02562 * 7 6 4 31 31 H 1.08999 * 109.47352 * 56.20163 * 16 14 12 32 32 H 1.09001 * 109.47502 * 176.20451 * 16 14 12 33 33 H 1.09003 * 109.47128 * 296.20518 * 16 14 12 34 34 H 0.97000 * 119.99904 * 24.99191 * 17 14 12 35 35 H 1.08997 * 110.43327 * 57.45915 * 20 18 17 36 36 H 1.08994 * 110.89887 * 85.04789 * 21 20 18 37 37 H 1.09006 * 110.76021 * 321.56716 * 21 20 18 38 38 H 1.09003 * 110.48588 * 279.19195 * 22 21 20 39 39 H 1.08996 * 110.48724 * 156.66867 * 22 21 20 40 40 H 1.09008 * 110.03184 * 95.60852 * 23 22 21 41 41 H 1.09000 * 110.03889 * 216.99136 * 23 22 21 42 42 H 1.08997 * 110.03631 * 119.28160 * 24 23 22 43 43 H 1.08996 * 110.03497 * 240.66957 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3716 1.9832 -1.1799 5 1 2.9579 2.8902 -1.1689 6 6 1.9755 1.4267 -2.3899 7 7 1.0800 0.4651 -2.4088 8 14 2.7159 2.0452 -3.9894 9 1 3.6929 3.1248 -3.6978 10 1 3.4054 0.9264 -4.6810 11 1 1.6375 2.5765 -4.8611 12 6 2.1205 2.0598 1.1600 13 8 1.9016 1.4982 2.2125 14 6 2.5064 3.5165 1.1491 15 1 1.9005 4.0475 0.4149 16 6 3.9857 3.6495 0.7817 17 7 2.2796 4.0917 2.4774 18 6 2.0606 5.4148 2.6102 19 8 2.0517 6.1294 1.6303 20 6 1.8267 6.0064 3.9764 21 6 0.5059 5.4651 4.5867 22 6 0.1312 6.5655 5.6103 23 6 0.5232 7.8845 4.9130 24 6 1.6013 7.5291 3.8741 25 1 -0.3633 0.6184 -0.8208 26 1 -0.3633 -1.0199 -0.1251 27 1 -0.3633 0.4016 0.9460 28 1 1.8933 -0.5140 -0.8899 29 1 1.8934 -0.5139 0.8901 30 1 0.8037 0.0763 -3.2535 31 1 4.1674 3.1619 -0.1761 32 1 4.2483 4.7048 0.7078 33 1 4.5952 3.1764 1.5516 34 1 2.2870 3.5202 3.2611 35 1 2.6679 5.7887 4.6344 36 1 0.6714 4.5115 5.0879 37 1 -0.2639 5.3718 3.8207 38 1 0.6987 6.4382 6.5322 39 1 -0.9389 6.5464 5.8163 40 1 -0.3455 8.3170 4.4165 41 1 0.9244 8.5879 5.6427 42 1 1.2557 7.7889 2.8735 43 1 2.5261 8.0601 4.0991 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330404445.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:03 Heat of formation + Delta-G solvation = -77.440864 kcal Electronic energy + Delta-G solvation = -23264.688645 eV Core-core repulsion = 19923.663347 eV Total energy + Delta-G solvation = -3341.025297 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.97153 -38.71612 -36.99242 -35.29564 -34.21161 -31.64334 -31.07467 -29.47036 -28.71216 -28.31108 -25.09230 -23.86893 -22.33221 -21.01437 -20.38106 -19.48134 -19.11090 -17.77201 -16.91458 -15.88375 -15.65422 -15.24130 -14.74883 -14.56182 -14.24380 -13.90279 -13.68313 -13.38762 -13.20777 -12.89740 -12.51186 -12.07599 -12.04088 -11.86426 -11.39265 -11.37663 -11.30643 -11.17091 -11.15606 -11.11515 -10.82631 -10.76775 -10.65398 -10.45482 -10.38145 -10.15291 -9.78894 -9.39204 -8.99296 -8.72926 -8.34445 -7.81812 -6.38943 -4.00619 2.98456 3.06212 3.18421 3.21583 3.51703 3.80034 4.03275 4.48566 4.57919 4.73454 4.81090 5.00336 5.25016 5.33009 5.43899 5.48257 5.55426 5.60557 5.79578 5.82803 5.86878 5.89571 5.94734 6.03620 6.15546 6.25766 6.33090 6.37586 6.45947 6.54452 6.68235 6.75296 6.83705 6.91526 7.02316 7.31686 7.41925 7.69702 7.76365 7.99952 8.36716 8.63971 8.97927 9.42489 9.81060 10.55611 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022521 B = 0.004541 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.969970 B = 6165.073094 C = 6788.779547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.135 3.865 3 N -0.429 5.429 4 C -0.341 4.341 5 H 0.109 0.891 6 C 0.036 3.964 7 N -0.861 5.861 8 Si 0.923 3.077 9 H -0.267 1.267 10 H -0.279 1.279 11 H -0.280 1.280 12 C 0.447 3.553 13 O -0.612 6.612 14 C 0.140 3.860 15 H 0.104 0.896 16 C -0.161 4.161 17 N -0.705 5.705 18 C 0.517 3.483 19 O -0.548 6.548 20 C -0.113 4.113 21 C -0.114 4.114 22 C -0.123 4.123 23 C -0.124 4.124 24 C -0.112 4.112 25 H 0.082 0.918 26 H 0.035 0.965 27 H 0.021 0.979 28 H 0.101 0.899 29 H 0.034 0.966 30 H 0.268 0.732 31 H 0.089 0.911 32 H 0.056 0.944 33 H 0.051 0.949 34 H 0.405 0.595 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.084 0.916 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.854 7.932 9.561 12.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.012 3.988 3 N -0.146 5.146 4 C -0.468 4.468 5 H 0.126 0.874 6 C -0.169 4.169 7 N -0.499 5.499 8 Si 0.749 3.251 9 H -0.191 1.191 10 H -0.205 1.205 11 H -0.206 1.206 12 C 0.235 3.765 13 O -0.500 6.500 14 C 0.032 3.968 15 H 0.122 0.878 16 C -0.220 4.220 17 N -0.357 5.357 18 C 0.303 3.697 19 O -0.426 6.426 20 C -0.134 4.134 21 C -0.152 4.152 22 C -0.161 4.161 23 C -0.162 4.162 24 C -0.150 4.150 25 H 0.101 0.899 26 H 0.054 0.946 27 H 0.040 0.960 28 H 0.119 0.881 29 H 0.053 0.947 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.242 0.758 35 H 0.115 0.885 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.103 0.897 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.641 7.992 9.162 12.175 hybrid contribution 0.290 -0.109 -0.601 0.676 sum 0.931 7.884 8.561 11.675 Atomic orbital electron populations 1.21921 0.96800 1.00246 1.00273 1.21260 0.94355 0.82817 1.00359 1.43746 1.54283 1.11387 1.05195 1.20066 1.32799 1.11120 0.82817 0.87352 1.25320 0.95295 0.96609 0.99690 1.70147 1.27481 1.25515 1.26805 0.85917 0.79053 0.78795 0.81319 1.19119 1.20515 1.20600 1.19943 0.84169 0.87957 0.84460 1.90490 1.58387 1.70009 1.31136 1.20547 0.97772 0.93586 0.84898 0.87772 1.22209 0.94573 1.01971 1.03210 1.45862 1.71595 1.07940 1.10272 1.20459 0.76040 0.82118 0.91088 1.90659 1.51611 1.60075 1.40253 1.22201 0.99918 0.96987 0.94311 1.22549 0.95735 0.98538 0.98404 1.22349 1.01099 0.94516 0.98087 1.22150 0.98773 0.97420 0.97844 1.22062 0.98926 0.93061 1.00930 0.89945 0.94574 0.95994 0.88106 0.94722 0.92136 0.89240 0.92462 0.92965 0.75825 0.88480 0.90632 0.90836 0.91519 0.91528 0.91789 0.91939 0.89705 0.91712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 9.48 37.16 0.35 -2.76 16 2 C 0.13 3.26 5.28 -4.04 -0.02 3.24 16 3 N -0.43 -10.60 2.64 -114.81 -0.30 -10.91 16 4 C -0.34 -8.33 8.51 -14.94 -0.13 -8.46 16 5 H 0.11 2.52 4.56 -52.49 -0.24 2.29 16 6 C 0.04 0.86 5.15 -17.47 -0.09 0.77 16 7 N -0.86 -21.25 8.12 55.50 0.45 -20.80 16 8 Si 0.92 19.01 29.57 -169.99 -5.03 13.99 16 9 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 10 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 11 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 12 C 0.45 10.61 6.95 -10.99 -0.08 10.53 16 13 O -0.61 -15.40 15.49 5.55 0.09 -15.32 16 14 C 0.14 2.89 2.16 -69.08 -0.15 2.74 16 15 H 0.10 2.36 7.17 -51.93 -0.37 1.99 16 16 C -0.16 -3.00 9.11 37.16 0.34 -2.67 16 17 N -0.70 -12.66 5.00 -54.93 -0.27 -12.94 16 18 C 0.52 8.82 7.10 -10.99 -0.08 8.74 16 19 O -0.55 -11.15 15.09 5.55 0.08 -11.07 16 20 C -0.11 -1.43 3.25 -89.92 -0.29 -1.73 16 21 C -0.11 -1.33 6.34 -24.55 -0.16 -1.48 16 22 C -0.12 -1.16 6.82 -25.07 -0.17 -1.33 16 23 C -0.12 -1.21 6.80 -25.61 -0.17 -1.38 16 24 C -0.11 -1.34 6.18 -25.61 -0.16 -1.49 16 25 H 0.08 2.07 6.46 -51.93 -0.34 1.73 16 26 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.10 2.52 5.90 -51.93 -0.31 2.21 16 29 H 0.03 0.83 7.55 -51.92 -0.39 0.44 16 30 H 0.27 6.28 8.31 -40.82 -0.34 5.95 16 31 H 0.09 1.73 5.41 -51.93 -0.28 1.45 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.41 6.91 7.72 -40.82 -0.31 6.60 16 35 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.97 8.06 -51.93 -0.42 0.55 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.08 1.21 6.85 -51.93 -0.36 0.85 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 337.90 15.07 5.09 5.09 Total: -1.00 -28.11 337.90 -7.49 -35.61 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -6.80 Total: 11.61 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -0.80 Total: 4.73 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: -0.13 Total: -44.64 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: 0.17 Total: -26.39 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.99 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.11 -7.49 -35.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330404445.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.835 kcal (2) G-P(sol) polarization free energy of solvation -28.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds