Wall clock time and date at job start Tue Mar 31 2020 06:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.47388 * 2 1 4 4 C 1.37092 * 119.99688 * 263.60330 * 3 2 1 5 5 H 1.08000 * 119.99509 * 195.50163 * 4 3 2 6 6 C 1.38950 * 120.00460 * 15.49981 * 4 3 2 7 7 N 1.31408 * 119.99785 * 11.65556 * 6 4 3 8 8 Si 1.86799 * 120.00030 * 191.65752 * 6 4 3 9 9 H 1.48497 * 109.47400 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47187 * 119.99868 * 8 6 4 11 11 H 1.48500 * 109.46814 * 239.99937 * 8 6 4 12 12 C 1.34780 * 119.99870 * 83.60295 * 3 2 1 13 13 O 1.21291 * 119.99878 * 5.36888 * 12 3 2 14 14 C 1.50698 * 119.99554 * 185.37383 * 12 3 2 15 15 H 1.08998 * 109.47461 * 48.30077 * 14 12 3 16 16 C 1.53002 * 109.47068 * 288.29925 * 14 12 3 17 17 N 1.46507 * 109.46988 * 168.30424 * 14 12 3 18 18 C 1.34770 * 119.99891 * 204.99888 * 17 14 12 19 19 O 1.21285 * 120.00012 * 359.97438 * 18 17 14 20 20 C 1.50701 * 119.99907 * 179.97438 * 18 17 14 21 21 C 1.55236 * 110.58298 * 294.87576 * 20 18 17 22 22 C 1.54889 * 102.58814 * 203.33895 * 21 20 18 23 23 C 1.54268 * 104.31382 * 37.92807 * 22 21 20 24 24 C 1.53874 * 106.60134 * 336.32627 * 23 22 21 25 25 H 1.09001 * 109.47064 * 53.00449 * 1 2 3 26 26 H 1.08993 * 109.47151 * 173.00535 * 1 2 3 27 27 H 1.09003 * 109.46811 * 293.00523 * 1 2 3 28 28 H 1.09001 * 109.46794 * 239.99280 * 2 1 3 29 29 H 1.09008 * 109.46850 * 119.99985 * 2 1 3 30 30 H 0.96999 * 119.99845 * 180.02562 * 7 6 4 31 31 H 1.08999 * 109.47352 * 56.20163 * 16 14 12 32 32 H 1.09001 * 109.47502 * 176.20451 * 16 14 12 33 33 H 1.09003 * 109.47128 * 296.20518 * 16 14 12 34 34 H 0.97000 * 119.99904 * 24.99191 * 17 14 12 35 35 H 1.08997 * 110.43327 * 57.45915 * 20 18 17 36 36 H 1.08994 * 110.89887 * 85.04789 * 21 20 18 37 37 H 1.09006 * 110.76021 * 321.56716 * 21 20 18 38 38 H 1.09003 * 110.48588 * 279.19195 * 22 21 20 39 39 H 1.08996 * 110.48724 * 156.66867 * 22 21 20 40 40 H 1.09008 * 110.03184 * 95.60852 * 23 22 21 41 41 H 1.09000 * 110.03889 * 216.99136 * 23 22 21 42 42 H 1.08997 * 110.03631 * 119.28160 * 24 23 22 43 43 H 1.08996 * 110.03497 * 240.66957 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3716 1.9832 -1.1799 5 1 2.9579 2.8902 -1.1689 6 6 1.9755 1.4267 -2.3899 7 7 1.0800 0.4651 -2.4088 8 14 2.7159 2.0452 -3.9894 9 1 3.6929 3.1248 -3.6978 10 1 3.4054 0.9264 -4.6810 11 1 1.6375 2.5765 -4.8611 12 6 2.1205 2.0598 1.1600 13 8 1.9016 1.4982 2.2125 14 6 2.5064 3.5165 1.1491 15 1 1.9005 4.0475 0.4149 16 6 3.9857 3.6495 0.7817 17 7 2.2796 4.0917 2.4774 18 6 2.0606 5.4148 2.6102 19 8 2.0517 6.1294 1.6303 20 6 1.8267 6.0064 3.9764 21 6 0.5059 5.4651 4.5867 22 6 0.1312 6.5655 5.6103 23 6 0.5232 7.8845 4.9130 24 6 1.6013 7.5291 3.8741 25 1 -0.3633 0.6184 -0.8208 26 1 -0.3633 -1.0199 -0.1251 27 1 -0.3633 0.4016 0.9460 28 1 1.8933 -0.5140 -0.8899 29 1 1.8934 -0.5139 0.8901 30 1 0.8037 0.0763 -3.2535 31 1 4.1674 3.1619 -0.1761 32 1 4.2483 4.7048 0.7078 33 1 4.5952 3.1764 1.5516 34 1 2.2870 3.5202 3.2611 35 1 2.6679 5.7887 4.6344 36 1 0.6714 4.5115 5.0879 37 1 -0.2639 5.3718 3.8207 38 1 0.6987 6.4382 6.5322 39 1 -0.9389 6.5464 5.8163 40 1 -0.3455 8.3170 4.4165 41 1 0.9244 8.5879 5.6427 42 1 1.2557 7.7889 2.8735 43 1 2.5261 8.0601 4.0991 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330404445.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:02 Heat of formation + Delta-G solvation = -93.576790 kcal Electronic energy + Delta-G solvation = -23265.388351 eV Core-core repulsion = 19923.663347 eV Total energy + Delta-G solvation = -3341.725004 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.43975 -40.38436 -38.09956 -37.13172 -35.86070 -33.51400 -32.69528 -31.04461 -29.68985 -29.45178 -26.95912 -25.53849 -23.90631 -22.42041 -21.31981 -21.02183 -20.67829 -19.31028 -18.49673 -17.45933 -16.99421 -16.67311 -16.28272 -16.05435 -15.92453 -15.42099 -15.23619 -14.67552 -14.48846 -14.34680 -14.27596 -13.83300 -13.63368 -13.19924 -13.12221 -12.90696 -12.84204 -12.51986 -12.49808 -12.19287 -12.05438 -12.04403 -11.97951 -11.94036 -11.69230 -11.67764 -11.26983 -10.90726 -10.77374 -10.44010 -10.05073 -9.73248 -8.24877 -5.92486 1.39176 1.49430 1.60338 1.62302 1.91394 2.11885 2.32474 2.99186 3.12821 3.53659 3.64424 3.82358 4.02663 4.22392 4.29689 4.31430 4.48510 4.53242 4.55284 4.60509 4.61571 4.77923 4.81372 4.85600 4.87308 4.92349 4.97270 5.07438 5.11855 5.12437 5.22064 5.28721 5.33873 5.42360 5.43795 5.50527 5.56522 5.78569 5.84205 6.45564 6.60189 7.08573 7.24314 7.53659 7.91337 8.70273 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022521 B = 0.004541 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.969970 B = 6165.073094 C = 6788.779547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.136 3.864 3 N -0.440 5.440 4 C -0.361 4.361 5 H 0.116 0.884 6 C -0.002 4.002 7 N -0.880 5.880 8 Si 0.986 3.014 9 H -0.261 1.261 10 H -0.275 1.275 11 H -0.283 1.283 12 C 0.439 3.561 13 O -0.631 6.631 14 C 0.148 3.852 15 H 0.080 0.920 16 C -0.150 4.150 17 N -0.703 5.703 18 C 0.514 3.486 19 O -0.584 6.584 20 C -0.107 4.107 21 C -0.116 4.116 22 C -0.116 4.116 23 C -0.120 4.120 24 C -0.113 4.113 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.012 0.988 28 H 0.093 0.907 29 H 0.031 0.969 30 H 0.271 0.729 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.411 0.589 35 H 0.125 0.875 36 H 0.083 0.917 37 H 0.050 0.950 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.060 0.940 41 H 0.084 0.916 42 H 0.054 0.946 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.480 8.792 10.619 13.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.013 3.987 3 N -0.156 5.156 4 C -0.488 4.488 5 H 0.134 0.866 6 C -0.204 4.204 7 N -0.518 5.518 8 Si 0.810 3.190 9 H -0.184 1.184 10 H -0.201 1.201 11 H -0.209 1.209 12 C 0.228 3.772 13 O -0.520 6.520 14 C 0.039 3.961 15 H 0.098 0.902 16 C -0.208 4.208 17 N -0.355 5.355 18 C 0.302 3.698 19 O -0.465 6.465 20 C -0.128 4.128 21 C -0.154 4.154 22 C -0.153 4.153 23 C -0.158 4.158 24 C -0.151 4.151 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.032 0.968 28 H 0.111 0.889 29 H 0.050 0.950 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.249 0.751 35 H 0.142 0.858 36 H 0.102 0.898 37 H 0.068 0.932 38 H 0.105 0.895 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.102 0.898 42 H 0.073 0.927 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.265 8.850 10.243 13.595 hybrid contribution 0.050 -0.410 -0.933 1.020 sum 1.315 8.440 9.310 12.635 Atomic orbital electron populations 1.21752 0.96105 1.01059 0.98815 1.21221 0.94861 0.82967 0.99678 1.43945 1.54342 1.11607 1.05732 1.20379 1.33557 1.11764 0.83051 0.86633 1.26086 0.95379 0.96727 1.02248 1.70227 1.27882 1.26077 1.27638 0.84959 0.78185 0.78420 0.77418 1.18446 1.20056 1.20902 1.20425 0.83781 0.89062 0.83970 1.90459 1.59177 1.70776 1.31608 1.20307 0.98589 0.91252 0.85952 0.90171 1.22097 0.93131 1.02493 1.03094 1.45859 1.71825 1.08500 1.09290 1.21295 0.74599 0.81332 0.92544 1.90641 1.53072 1.60735 1.42029 1.22305 1.01511 0.97244 0.91746 1.22574 0.94385 0.99973 0.98480 1.22346 1.02034 0.92991 0.97936 1.22144 0.97941 0.98113 0.97600 1.22075 1.00317 0.92537 1.00147 0.91914 0.92447 0.96841 0.88914 0.95027 0.91884 0.89976 0.91632 0.91828 0.75137 0.85751 0.89797 0.93159 0.89498 0.90666 0.92094 0.89753 0.92677 0.90424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.55 9.48 71.98 0.68 -4.87 16 2 C 0.14 6.62 5.28 86.38 0.46 7.08 16 3 N -0.44 -21.98 2.64 -635.53 -1.68 -23.66 16 4 C -0.36 -17.74 8.51 84.04 0.72 -17.03 16 5 H 0.12 5.41 4.56 -2.91 -0.01 5.39 16 6 C 0.00 -0.08 5.15 84.93 0.44 0.36 16 7 N -0.88 -43.46 8.12 21.66 0.18 -43.28 16 8 Si 0.99 38.63 29.57 68.60 2.03 40.66 16 9 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 10 H -0.28 -10.55 7.11 99.48 0.71 -9.84 16 11 H -0.28 -11.18 7.11 99.48 0.71 -10.47 16 12 C 0.44 21.05 6.95 87.66 0.61 21.66 16 13 O -0.63 -31.90 15.49 -3.06 -0.05 -31.95 16 14 C 0.15 6.16 2.16 44.24 0.10 6.26 16 15 H 0.08 3.75 7.17 -2.39 -0.02 3.73 16 16 C -0.15 -5.51 9.11 71.98 0.66 -4.85 16 17 N -0.70 -25.12 5.00 -446.09 -2.23 -27.35 16 18 C 0.51 17.43 7.10 87.66 0.62 18.05 16 19 O -0.58 -24.15 15.09 -3.04 -0.05 -24.20 16 20 C -0.11 -2.55 3.25 -10.34 -0.03 -2.59 16 21 C -0.12 -2.52 6.34 32.01 0.20 -2.31 16 22 C -0.12 -1.84 6.82 31.67 0.22 -1.63 16 23 C -0.12 -2.04 6.80 31.32 0.21 -1.83 16 24 C -0.11 -2.53 6.18 31.32 0.19 -2.34 16 25 H 0.06 3.18 6.46 -2.39 -0.02 3.16 16 26 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 27 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.09 4.68 5.90 -2.39 -0.01 4.66 16 29 H 0.03 1.53 7.55 -2.38 -0.02 1.52 16 30 H 0.27 12.65 8.31 -92.71 -0.77 11.88 16 31 H 0.08 3.14 5.41 -2.39 -0.01 3.13 16 32 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.41 13.78 7.72 -92.71 -0.72 13.06 16 35 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.05 1.31 8.06 -2.38 -0.02 1.29 16 38 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 41 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.05 1.58 6.85 -2.39 -0.02 1.56 16 43 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -60.40 337.90 3.56 -56.84 By element: Atomic # 1 Polarization: 36.69 SS G_CDS: 0.30 Total: 36.99 kcal Atomic # 6 Polarization: 10.89 SS G_CDS: 5.07 Total: 15.95 kcal Atomic # 7 Polarization: -90.56 SS G_CDS: -3.73 Total: -94.29 kcal Atomic # 8 Polarization: -56.05 SS G_CDS: -0.09 Total: -56.14 kcal Atomic # 14 Polarization: 38.63 SS G_CDS: 2.03 Total: 40.66 kcal Total: -60.40 3.56 -56.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330404445.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.737 kcal (2) G-P(sol) polarization free energy of solvation -60.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds