Wall clock time and date at job start Tue Mar 31 2020 06:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.47478 * 2 1 4 4 C 1.37099 * 119.99820 * 87.28564 * 3 2 1 5 5 H 1.08001 * 119.99764 * 166.33067 * 4 3 2 6 6 C 1.38952 * 120.00010 * 346.60275 * 4 3 2 7 7 N 1.31409 * 119.99902 * 2.14304 * 6 4 3 8 8 Si 1.86803 * 119.99744 * 182.14301 * 6 4 3 9 9 H 1.48495 * 109.47086 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46976 * 120.00092 * 8 6 4 11 11 H 1.48498 * 109.46988 * 239.99763 * 8 6 4 12 12 C 1.34776 * 120.00096 * 267.29220 * 3 2 1 13 13 O 1.21298 * 119.99764 * 5.65806 * 12 3 2 14 14 C 1.50692 * 120.00169 * 185.66287 * 12 3 2 15 15 H 1.09000 * 109.47236 * 319.14416 * 14 12 3 16 16 C 1.53000 * 109.47341 * 79.14178 * 14 12 3 17 17 N 1.46495 * 109.47662 * 199.14134 * 14 12 3 18 18 C 1.34774 * 120.00417 * 154.99314 * 17 14 12 19 19 O 1.21279 * 120.00193 * 0.02562 * 18 17 14 20 20 C 1.50704 * 120.00051 * 179.97438 * 18 17 14 21 21 C 1.54258 * 110.03771 * 297.91497 * 20 18 17 22 22 C 1.54963 * 104.16486 * 217.13659 * 21 20 18 23 23 C 1.54898 * 102.77416 * 37.88342 * 22 21 20 24 24 C 1.53878 * 110.03243 * 180.69305 * 20 18 17 25 25 H 1.09004 * 109.47052 * 307.51155 * 1 2 3 26 26 H 1.09003 * 109.46955 * 67.50726 * 1 2 3 27 27 H 1.09000 * 109.47051 * 187.51030 * 1 2 3 28 28 H 1.08995 * 109.47045 * 240.00039 * 2 1 3 29 29 H 1.09004 * 109.47294 * 119.99847 * 2 1 3 30 30 H 0.97000 * 119.99393 * 180.02562 * 7 6 4 31 31 H 1.08999 * 109.47097 * 305.36954 * 16 14 12 32 32 H 1.08998 * 109.47269 * 65.36394 * 16 14 12 33 33 H 1.08999 * 109.47566 * 185.37157 * 16 14 12 34 34 H 0.96999 * 119.99835 * 335.00580 * 17 14 12 35 35 H 1.09008 * 110.01144 * 59.30964 * 20 18 17 36 36 H 1.09001 * 110.48548 * 335.78268 * 21 20 18 37 37 H 1.09006 * 110.48676 * 98.42003 * 21 20 18 38 38 H 1.09003 * 110.71578 * 279.57430 * 22 21 20 39 39 H 1.08992 * 110.92767 * 156.29261 * 22 21 20 40 40 H 1.09002 * 110.48399 * 203.40883 * 23 22 21 41 41 H 1.09004 * 110.59268 * 80.81984 * 23 22 21 42 42 H 1.09002 * 110.03121 * 238.57581 * 24 20 18 43 43 H 1.09006 * 110.02714 * 0.02562 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1939 2.0462 1.1860 5 1 2.7539 2.9694 1.2097 6 6 1.6562 1.5295 2.3584 7 7 1.0156 0.3823 2.3377 8 14 1.8439 2.4657 3.9640 9 1 2.5999 3.7203 3.7200 10 1 0.5006 2.7950 4.5049 11 1 2.5796 1.6262 4.9433 12 6 2.2951 1.9982 -1.1659 13 8 2.0435 1.4485 -2.2175 14 6 2.9170 3.3708 -1.1630 15 1 2.4557 3.9771 -0.3835 16 6 4.4183 3.2499 -0.8935 17 7 2.7045 4.0061 -2.4658 18 6 2.6997 5.3500 -2.5675 19 8 2.8718 6.0335 -1.5805 20 6 2.4816 6.0034 -3.9079 21 6 3.6142 5.6098 -4.8783 22 6 3.8699 6.8958 -5.7043 23 6 3.7028 8.0186 -4.6504 24 6 2.5374 7.5344 -3.7632 25 1 -0.3633 0.6258 0.8152 26 1 -0.3633 0.3932 -0.9495 27 1 -0.3633 -1.0188 0.1343 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 0.6399 0.0218 3.1561 31 1 4.5780 2.6929 0.0297 32 1 4.8950 2.7252 -1.7215 33 1 4.8514 4.2455 -0.7966 34 1 2.5670 3.4595 -3.2552 35 1 1.5174 5.7020 -4.3173 36 1 4.5099 5.3277 -4.3249 37 1 3.2939 4.7954 -5.5282 38 1 3.1298 6.9978 -6.4980 39 1 4.8790 6.8997 -6.1162 40 1 3.4475 8.9613 -5.1345 41 1 4.6122 8.1282 -4.0595 42 1 1.6007 7.9760 -4.1033 43 1 2.7227 7.8046 -2.7236 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330404446.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:05 Heat of formation + Delta-G solvation = -76.036455 kcal Electronic energy + Delta-G solvation = -23263.597432 eV Core-core repulsion = 19922.633035 eV Total energy + Delta-G solvation = -3340.964398 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.03490 -38.72382 -36.95806 -35.36275 -34.20528 -31.62737 -30.97433 -29.49697 -28.71426 -28.38016 -24.98177 -23.99457 -22.23757 -20.99013 -20.57769 -19.41979 -19.13742 -17.69132 -16.96224 -15.92816 -15.70744 -15.09842 -14.80927 -14.48171 -14.23199 -14.15786 -13.62558 -13.43727 -13.10114 -12.91570 -12.49637 -12.22685 -11.88611 -11.60306 -11.43685 -11.39460 -11.29727 -11.17974 -11.11560 -11.08576 -10.91070 -10.81896 -10.63540 -10.52294 -10.47890 -10.15333 -9.90510 -9.40496 -8.94310 -8.72113 -8.34484 -7.83926 -6.31022 -3.99909 2.98049 3.06839 3.18888 3.22984 3.49708 3.80675 4.03326 4.46007 4.56909 4.73589 4.79819 5.01069 5.23420 5.34275 5.39812 5.48264 5.58207 5.61011 5.79073 5.79231 5.84658 5.87332 5.92624 6.02170 6.13666 6.23912 6.28581 6.37878 6.43203 6.57231 6.66019 6.79505 6.89498 6.92319 7.05859 7.28814 7.47787 7.73306 7.81168 7.98667 8.38306 8.62672 8.98049 9.42836 9.80266 10.55871 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023513 B = 0.004516 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.554359 B = 6198.959348 C = 6902.439407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.133 3.867 3 N -0.431 5.431 4 C -0.331 4.331 5 H 0.103 0.897 6 C 0.033 3.967 7 N -0.865 5.865 8 Si 0.926 3.074 9 H -0.267 1.267 10 H -0.280 1.280 11 H -0.280 1.280 12 C 0.446 3.554 13 O -0.612 6.612 14 C 0.136 3.864 15 H 0.106 0.894 16 C -0.150 4.150 17 N -0.706 5.706 18 C 0.516 3.484 19 O -0.547 6.547 20 C -0.113 4.113 21 C -0.115 4.115 22 C -0.123 4.123 23 C -0.124 4.124 24 C -0.119 4.119 25 H 0.079 0.921 26 H 0.016 0.984 27 H 0.034 0.966 28 H 0.032 0.968 29 H 0.110 0.890 30 H 0.266 0.734 31 H 0.077 0.923 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.406 0.594 35 H 0.096 0.904 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.901 8.325 -9.469 13.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.011 3.989 3 N -0.148 5.148 4 C -0.458 4.458 5 H 0.120 0.880 6 C -0.170 4.170 7 N -0.504 5.504 8 Si 0.752 3.248 9 H -0.191 1.191 10 H -0.205 1.205 11 H -0.206 1.206 12 C 0.233 3.767 13 O -0.500 6.500 14 C 0.029 3.971 15 H 0.124 0.876 16 C -0.209 4.209 17 N -0.357 5.357 18 C 0.302 3.698 19 O -0.425 6.425 20 C -0.134 4.134 21 C -0.153 4.153 22 C -0.161 4.161 23 C -0.161 4.161 24 C -0.157 4.157 25 H 0.098 0.902 26 H 0.035 0.965 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.128 0.872 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.242 0.758 35 H 0.114 0.886 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.784 8.358 -9.060 12.894 hybrid contribution -0.166 0.007 0.584 0.607 sum 3.619 8.365 -8.475 12.446 Atomic orbital electron populations 1.21948 0.96895 1.00162 0.99651 1.21470 0.94486 0.82432 1.00558 1.43820 1.54475 1.11973 1.04510 1.19877 1.34020 1.07364 0.84569 0.87958 1.25302 0.95513 0.96355 0.99851 1.70220 1.34857 1.17445 1.27895 0.85861 0.78305 0.79521 0.81106 1.19116 1.20530 1.20579 1.19893 0.84929 0.87571 0.84291 1.90497 1.60512 1.67724 1.31293 1.20635 0.96612 0.93957 0.85932 0.87603 1.21991 0.94323 1.02009 1.02577 1.45871 1.72217 1.06193 1.11458 1.20500 0.76196 0.82196 0.90881 1.90641 1.50044 1.62989 1.38804 1.21928 1.01035 0.97035 0.93441 1.22367 0.97796 0.98168 0.96980 1.22507 1.01435 0.94524 0.97603 1.22360 0.98839 0.97982 0.96932 1.22159 0.98500 0.92469 1.02543 0.90182 0.96483 0.94663 0.94915 0.87185 0.92242 0.90389 0.92835 0.92305 0.75819 0.88552 0.91051 0.90808 0.91391 0.91504 0.91758 0.91588 0.91664 0.89101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 9.34 37.16 0.35 -2.67 16 2 C 0.13 3.25 5.36 -4.04 -0.02 3.22 16 3 N -0.43 -10.71 2.63 -114.81 -0.30 -11.01 16 4 C -0.33 -8.16 8.68 -14.93 -0.13 -8.29 16 5 H 0.10 2.44 5.51 -52.49 -0.29 2.15 16 6 C 0.03 0.81 5.30 -17.47 -0.09 0.72 16 7 N -0.86 -21.29 7.40 55.50 0.41 -20.88 16 8 Si 0.93 19.26 29.55 -169.99 -5.02 14.24 16 9 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 10 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 11 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 12 C 0.45 10.61 6.87 -10.99 -0.08 10.53 16 13 O -0.61 -15.52 15.51 5.54 0.09 -15.43 16 14 C 0.14 2.80 2.13 -69.09 -0.15 2.66 16 15 H 0.11 2.38 6.22 -51.93 -0.32 2.06 16 16 C -0.15 -2.76 9.22 37.16 0.34 -2.42 16 17 N -0.71 -12.64 4.98 -54.94 -0.27 -12.91 16 18 C 0.52 8.77 6.97 -10.98 -0.08 8.69 16 19 O -0.55 -11.03 14.87 5.56 0.08 -10.95 16 20 C -0.11 -1.43 3.29 -90.65 -0.30 -1.73 16 21 C -0.12 -1.23 6.30 -25.04 -0.16 -1.39 16 22 C -0.12 -1.11 6.91 -24.69 -0.17 -1.28 16 23 C -0.12 -1.22 6.83 -25.07 -0.17 -1.39 16 24 C -0.12 -1.42 6.40 -25.61 -0.16 -1.58 16 25 H 0.08 2.02 6.24 -51.93 -0.32 1.70 16 26 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.03 0.80 7.42 -51.93 -0.39 0.41 16 29 H 0.11 2.78 5.92 -51.93 -0.31 2.47 16 30 H 0.27 6.25 8.31 -40.82 -0.34 5.91 16 31 H 0.08 1.47 7.19 -51.93 -0.37 1.10 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.41 6.92 7.72 -40.82 -0.32 6.60 16 35 H 0.10 1.11 8.14 -51.92 -0.42 0.69 16 36 H 0.07 0.83 7.85 -51.93 -0.41 0.43 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.09 1.30 6.39 -51.93 -0.33 0.97 16 LS Contribution 338.18 15.07 5.10 5.10 Total: -1.00 -28.17 338.18 -7.58 -35.75 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -6.84 Total: 11.03 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: -0.82 Total: 5.07 kcal Atomic # 7 Polarization: -44.64 SS G_CDS: -0.16 Total: -44.80 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: 0.17 Total: -26.38 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.02 Total: 14.24 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.17 -7.58 -35.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330404446.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.288 kcal (2) G-P(sol) polarization free energy of solvation -28.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds