Wall clock time and date at job start Tue Mar 31 2020 06:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.47478 * 2 1 4 4 C 1.37099 * 119.99820 * 87.28564 * 3 2 1 5 5 H 1.08001 * 119.99764 * 166.33067 * 4 3 2 6 6 C 1.38952 * 120.00010 * 346.60275 * 4 3 2 7 7 N 1.31409 * 119.99902 * 2.14304 * 6 4 3 8 8 Si 1.86803 * 119.99744 * 182.14301 * 6 4 3 9 9 H 1.48495 * 109.47086 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46976 * 120.00092 * 8 6 4 11 11 H 1.48498 * 109.46988 * 239.99763 * 8 6 4 12 12 C 1.34776 * 120.00096 * 267.29220 * 3 2 1 13 13 O 1.21298 * 119.99764 * 5.65806 * 12 3 2 14 14 C 1.50692 * 120.00169 * 185.66287 * 12 3 2 15 15 H 1.09000 * 109.47236 * 319.14416 * 14 12 3 16 16 C 1.53000 * 109.47341 * 79.14178 * 14 12 3 17 17 N 1.46495 * 109.47662 * 199.14134 * 14 12 3 18 18 C 1.34774 * 120.00417 * 154.99314 * 17 14 12 19 19 O 1.21279 * 120.00193 * 0.02562 * 18 17 14 20 20 C 1.50704 * 120.00051 * 179.97438 * 18 17 14 21 21 C 1.54258 * 110.03771 * 297.91497 * 20 18 17 22 22 C 1.54963 * 104.16486 * 217.13659 * 21 20 18 23 23 C 1.54898 * 102.77416 * 37.88342 * 22 21 20 24 24 C 1.53878 * 110.03243 * 180.69305 * 20 18 17 25 25 H 1.09004 * 109.47052 * 307.51155 * 1 2 3 26 26 H 1.09003 * 109.46955 * 67.50726 * 1 2 3 27 27 H 1.09000 * 109.47051 * 187.51030 * 1 2 3 28 28 H 1.08995 * 109.47045 * 240.00039 * 2 1 3 29 29 H 1.09004 * 109.47294 * 119.99847 * 2 1 3 30 30 H 0.97000 * 119.99393 * 180.02562 * 7 6 4 31 31 H 1.08999 * 109.47097 * 305.36954 * 16 14 12 32 32 H 1.08998 * 109.47269 * 65.36394 * 16 14 12 33 33 H 1.08999 * 109.47566 * 185.37157 * 16 14 12 34 34 H 0.96999 * 119.99835 * 335.00580 * 17 14 12 35 35 H 1.09008 * 110.01144 * 59.30964 * 20 18 17 36 36 H 1.09001 * 110.48548 * 335.78268 * 21 20 18 37 37 H 1.09006 * 110.48676 * 98.42003 * 21 20 18 38 38 H 1.09003 * 110.71578 * 279.57430 * 22 21 20 39 39 H 1.08992 * 110.92767 * 156.29261 * 22 21 20 40 40 H 1.09002 * 110.48399 * 203.40883 * 23 22 21 41 41 H 1.09004 * 110.59268 * 80.81984 * 23 22 21 42 42 H 1.09002 * 110.03121 * 238.57581 * 24 20 18 43 43 H 1.09006 * 110.02714 * 0.02562 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1939 2.0462 1.1860 5 1 2.7539 2.9694 1.2097 6 6 1.6562 1.5295 2.3584 7 7 1.0156 0.3823 2.3377 8 14 1.8439 2.4657 3.9640 9 1 2.5999 3.7203 3.7200 10 1 0.5006 2.7950 4.5049 11 1 2.5796 1.6262 4.9433 12 6 2.2951 1.9982 -1.1659 13 8 2.0435 1.4485 -2.2175 14 6 2.9170 3.3708 -1.1630 15 1 2.4557 3.9771 -0.3835 16 6 4.4183 3.2499 -0.8935 17 7 2.7045 4.0061 -2.4658 18 6 2.6997 5.3500 -2.5675 19 8 2.8718 6.0335 -1.5805 20 6 2.4816 6.0034 -3.9079 21 6 3.6142 5.6098 -4.8783 22 6 3.8699 6.8958 -5.7043 23 6 3.7028 8.0186 -4.6504 24 6 2.5374 7.5344 -3.7632 25 1 -0.3633 0.6258 0.8152 26 1 -0.3633 0.3932 -0.9495 27 1 -0.3633 -1.0188 0.1343 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 0.6399 0.0218 3.1561 31 1 4.5780 2.6929 0.0297 32 1 4.8950 2.7252 -1.7215 33 1 4.8514 4.2455 -0.7966 34 1 2.5670 3.4595 -3.2552 35 1 1.5174 5.7020 -4.3173 36 1 4.5099 5.3277 -4.3249 37 1 3.2939 4.7954 -5.5282 38 1 3.1298 6.9978 -6.4980 39 1 4.8790 6.8997 -6.1162 40 1 3.4475 8.9613 -5.1345 41 1 4.6122 8.1282 -4.0595 42 1 1.6007 7.9760 -4.1033 43 1 2.7227 7.8046 -2.7236 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330404446.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:04 Heat of formation + Delta-G solvation = -92.056972 kcal Electronic energy + Delta-G solvation = -23264.292134 eV Core-core repulsion = 19922.633035 eV Total energy + Delta-G solvation = -3341.659100 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.47204 -40.41017 -38.05743 -37.19734 -35.84814 -33.50094 -32.58503 -31.12405 -29.68542 -29.44513 -26.87775 -25.65736 -23.79452 -22.36873 -21.49407 -21.07037 -20.62595 -19.17822 -18.55535 -17.54670 -17.03551 -16.48325 -16.28773 -15.98141 -15.91744 -15.60414 -15.31344 -14.70906 -14.45925 -14.32150 -14.16476 -13.85979 -13.55444 -13.18493 -13.11444 -12.83302 -12.66491 -12.64025 -12.44756 -12.25879 -12.23786 -11.99344 -11.95794 -11.91583 -11.79985 -11.63707 -11.38360 -10.86954 -10.75513 -10.43864 -10.05257 -9.76762 -8.18561 -5.93096 1.38250 1.48123 1.58999 1.63114 1.89326 2.12385 2.31129 2.97516 3.12136 3.53640 3.69359 3.80732 4.04571 4.22888 4.26849 4.31479 4.49135 4.55859 4.56544 4.58974 4.69934 4.76103 4.83310 4.85695 4.87899 4.97495 5.01048 5.10143 5.11747 5.13476 5.26052 5.26703 5.32116 5.39729 5.48531 5.50010 5.56768 5.79438 5.86924 6.45686 6.59493 7.07464 7.23916 7.52826 7.89597 8.69105 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023513 B = 0.004516 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.554359 B = 6198.959348 C = 6902.439407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.134 3.866 3 N -0.442 5.442 4 C -0.351 4.351 5 H 0.106 0.894 6 C -0.002 4.002 7 N -0.880 5.880 8 Si 0.988 3.012 9 H -0.266 1.266 10 H -0.281 1.281 11 H -0.274 1.274 12 C 0.438 3.562 13 O -0.631 6.631 14 C 0.144 3.856 15 H 0.085 0.915 16 C -0.139 4.139 17 N -0.704 5.704 18 C 0.513 3.487 19 O -0.582 6.582 20 C -0.109 4.109 21 C -0.114 4.114 22 C -0.115 4.115 23 C -0.122 4.122 24 C -0.121 4.121 25 H 0.062 0.938 26 H 0.008 0.992 27 H 0.054 0.946 28 H 0.028 0.972 29 H 0.102 0.898 30 H 0.270 0.730 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.411 0.589 35 H 0.113 0.887 36 H 0.058 0.942 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.055 0.945 42 H 0.081 0.919 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.186 9.210 -10.433 14.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.012 3.988 3 N -0.158 5.158 4 C -0.478 4.478 5 H 0.123 0.877 6 C -0.204 4.204 7 N -0.519 5.519 8 Si 0.812 3.188 9 H -0.190 1.190 10 H -0.207 1.207 11 H -0.199 1.199 12 C 0.227 3.773 13 O -0.521 6.521 14 C 0.036 3.964 15 H 0.103 0.897 16 C -0.198 4.198 17 N -0.356 5.356 18 C 0.302 3.698 19 O -0.463 6.463 20 C -0.130 4.130 21 C -0.152 4.152 22 C -0.153 4.153 23 C -0.159 4.159 24 C -0.159 4.159 25 H 0.080 0.920 26 H 0.027 0.973 27 H 0.073 0.927 28 H 0.047 0.953 29 H 0.120 0.880 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.248 0.752 35 H 0.131 0.869 36 H 0.077 0.923 37 H 0.107 0.893 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.074 0.926 42 H 0.100 0.900 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.073 9.236 -10.042 14.239 hybrid contribution -0.289 -0.302 0.887 0.980 sum 3.784 8.935 -9.155 13.341 Atomic orbital electron populations 1.21785 0.96184 1.00928 0.98305 1.21420 0.95008 0.82595 0.99811 1.44008 1.54596 1.12146 1.05059 1.20100 1.34986 1.07830 0.84876 0.87672 1.26024 0.95005 0.97042 1.02292 1.70288 1.34767 1.18091 1.28753 0.84926 0.77988 0.78362 0.77499 1.19031 1.20656 1.19910 1.20400 0.84602 0.88565 0.83748 1.90467 1.61282 1.68579 1.31778 1.20402 0.97425 0.91725 0.86858 0.89741 1.21890 0.92803 1.02481 1.02598 1.45869 1.72472 1.06737 1.10512 1.21322 0.74812 0.81476 0.92216 1.90626 1.51526 1.63551 1.40552 1.22039 1.02698 0.97163 0.91099 1.22403 0.96348 0.99739 0.96739 1.22504 1.02785 0.92656 0.97329 1.22360 0.97461 0.99276 0.96806 1.22180 1.00313 0.91995 1.01364 0.91963 0.97292 0.92663 0.95343 0.88017 0.91912 0.91107 0.91771 0.91500 0.75182 0.86935 0.92337 0.89320 0.89685 0.90237 0.89852 0.92582 0.90048 0.92040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.34 9.34 71.98 0.67 -4.67 16 2 C 0.13 6.61 5.36 86.38 0.46 7.07 16 3 N -0.44 -22.19 2.63 -635.53 -1.67 -23.86 16 4 C -0.35 -17.44 8.68 84.04 0.73 -16.71 16 5 H 0.11 5.07 5.51 -2.91 -0.02 5.05 16 6 C 0.00 -0.08 5.30 84.93 0.45 0.37 16 7 N -0.88 -43.15 7.40 21.66 0.16 -42.99 16 8 Si 0.99 39.20 29.55 68.60 2.03 41.23 16 9 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 10 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 11 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 12 C 0.44 21.06 6.87 87.65 0.60 21.67 16 13 O -0.63 -32.14 15.51 -3.09 -0.05 -32.18 16 14 C 0.14 5.99 2.13 44.24 0.09 6.09 16 15 H 0.08 3.89 6.22 -2.39 -0.01 3.88 16 16 C -0.14 -5.08 9.22 71.98 0.66 -4.42 16 17 N -0.70 -25.10 4.98 -446.12 -2.22 -27.32 16 18 C 0.51 17.33 6.97 87.66 0.61 17.94 16 19 O -0.58 -23.85 14.87 -3.03 -0.05 -23.90 16 20 C -0.11 -2.60 3.29 -10.82 -0.04 -2.64 16 21 C -0.11 -2.20 6.30 31.69 0.20 -2.00 16 22 C -0.12 -1.72 6.91 31.91 0.22 -1.50 16 23 C -0.12 -2.13 6.83 31.67 0.22 -1.91 16 24 C -0.12 -2.71 6.40 31.32 0.20 -2.51 16 25 H 0.06 3.15 6.24 -2.38 -0.01 3.13 16 26 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 27 H 0.05 2.30 8.14 -2.39 -0.02 2.29 16 28 H 0.03 1.40 7.42 -2.39 -0.02 1.38 16 29 H 0.10 5.18 5.92 -2.39 -0.01 5.17 16 30 H 0.27 12.52 8.31 -92.71 -0.77 11.75 16 31 H 0.07 2.67 7.19 -2.39 -0.02 2.66 16 32 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.41 13.80 7.72 -92.71 -0.72 13.08 16 35 H 0.11 2.35 8.14 -2.38 -0.02 2.33 16 36 H 0.06 1.28 7.85 -2.39 -0.02 1.26 16 37 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 38 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.06 1.77 6.39 -2.38 -0.02 1.75 16 Total: -1.00 -60.16 338.18 3.59 -56.57 By element: Atomic # 1 Polarization: 35.38 SS G_CDS: 0.29 Total: 35.67 kcal Atomic # 6 Polarization: 11.70 SS G_CDS: 5.09 Total: 16.78 kcal Atomic # 7 Polarization: -90.44 SS G_CDS: -3.73 Total: -94.17 kcal Atomic # 8 Polarization: -55.99 SS G_CDS: -0.09 Total: -56.08 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 2.03 Total: 41.23 kcal Total: -60.16 3.59 -56.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330404446.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.484 kcal (2) G-P(sol) polarization free energy of solvation -60.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds