Wall clock time and date at job start Tue Mar 31 2020 05:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47010 * 2 1 4 4 C 1.46498 * 120.00138 * 265.81567 * 3 2 1 5 5 C 1.50700 * 109.47022 * 270.00384 * 4 3 2 6 6 H 1.07995 * 120.00366 * 359.97438 * 5 4 3 7 7 C 1.37888 * 119.99867 * 179.97438 * 5 4 3 8 8 N 1.31505 * 119.99820 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99944 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.47095 * 89.99709 * 9 7 5 11 11 H 1.48497 * 109.47167 * 209.99907 * 9 7 5 12 12 H 1.48501 * 109.47041 * 330.00282 * 9 7 5 13 13 C 1.34778 * 119.99991 * 85.82126 * 3 2 1 14 14 O 1.21352 * 120.00105 * 185.03690 * 13 3 2 15 15 C 1.49453 * 119.99843 * 5.03709 * 13 3 2 16 16 O 1.21350 * 119.99817 * 274.46322 * 15 13 3 17 17 N 1.34778 * 120.00038 * 94.46733 * 15 13 3 18 18 C 1.46927 * 120.62993 * 354.66929 * 17 15 13 19 19 C 1.53621 * 108.54227 * 126.36958 * 18 17 15 20 20 C 1.53039 * 109.24269 * 54.85767 * 19 18 17 21 21 C 1.53002 * 109.44496 * 178.49718 * 20 19 18 22 22 C 1.53040 * 109.53733 * 298.50577 * 20 19 18 23 23 C 1.46931 * 120.62858 * 174.94601 * 17 15 13 24 24 H 1.09002 * 109.47497 * 299.99958 * 1 2 3 25 25 H 1.09004 * 109.47025 * 59.99759 * 1 2 3 26 26 H 1.08997 * 109.47465 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46923 * 239.99638 * 2 1 3 28 28 H 1.09004 * 109.47025 * 120.00241 * 2 1 3 29 29 H 1.08997 * 109.47125 * 30.00308 * 4 3 2 30 30 H 1.09000 * 109.47253 * 150.00530 * 4 3 2 31 31 H 0.97000 * 120.00064 * 180.02562 * 8 7 5 32 32 H 1.09003 * 109.58216 * 246.20062 * 18 17 15 33 33 H 1.09003 * 109.58519 * 6.62614 * 18 17 15 34 34 H 1.09000 * 109.63610 * 294.85801 * 19 18 17 35 35 H 1.09002 * 109.42999 * 174.72440 * 19 18 17 36 36 H 1.08997 * 109.46525 * 58.53303 * 20 19 18 37 37 H 1.09004 * 109.47013 * 180.02562 * 21 20 19 38 38 H 1.09000 * 109.47297 * 300.05307 * 21 20 19 39 39 H 1.09003 * 109.47687 * 60.06085 * 21 20 19 40 40 H 1.09000 * 109.50116 * 301.42250 * 22 20 19 41 41 H 1.08993 * 109.49955 * 181.31885 * 22 20 19 42 42 H 1.08989 * 109.58716 * 353.37198 * 23 17 15 43 43 H 1.09000 * 109.58387 * 113.65718 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3497 2.0410 -1.2653 5 6 3.7994 1.7948 -1.5955 6 1 4.4126 1.2062 -0.9294 7 6 4.3428 2.3211 -2.7483 8 7 5.6079 2.1067 -3.0362 9 14 3.2820 3.3387 -3.9010 10 1 3.3563 4.7691 -3.5089 11 1 3.7726 3.1811 -5.2937 12 1 1.8738 2.8749 -3.8166 13 6 2.1627 2.0449 1.1641 14 8 2.4791 3.2164 1.1594 15 6 1.9332 1.3380 2.4607 16 8 0.8115 1.2552 2.9163 17 7 2.9720 0.7926 3.1241 18 6 4.3163 0.7822 2.5312 19 6 5.2963 1.4138 3.5316 20 6 5.1943 0.6788 4.8700 21 6 6.1954 1.2799 5.8587 22 6 3.7766 0.8251 5.4275 23 6 2.7804 0.1919 4.4512 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.7225 1.6380 -2.0604 30 1 2.1752 3.1129 -1.1728 31 1 5.9904 2.4773 -3.8470 32 1 4.6151 -0.2449 2.3215 33 1 4.3125 1.3599 1.6068 34 1 5.0474 2.4654 3.6740 35 1 6.3125 1.3290 3.1464 36 1 5.4194 -0.3774 4.7225 37 1 6.1234 0.7564 6.8121 38 1 7.2052 1.1758 5.4619 39 1 5.9703 2.3361 6.0069 40 1 3.5419 1.8822 5.5521 41 1 3.7111 0.3213 6.3918 42 1 1.7630 0.3799 4.7939 43 1 2.9541 -0.8827 4.3943 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330423537.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:50 Heat of formation + Delta-G solvation = -77.936876 kcal Electronic energy + Delta-G solvation = -23687.294715 eV Core-core repulsion = 20346.247909 eV Total energy + Delta-G solvation = -3341.046806 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.59804 -38.64017 -37.37504 -35.60259 -33.96120 -32.76948 -31.21645 -30.42254 -28.70174 -27.88764 -24.96905 -23.38683 -23.07608 -22.84942 -21.23226 -19.97052 -18.35305 -17.46840 -16.94196 -16.46517 -16.13539 -14.91320 -14.75533 -14.70915 -14.36352 -14.29429 -13.95922 -13.62933 -13.45450 -13.19544 -13.05035 -12.72209 -12.43417 -12.34413 -11.99593 -11.93575 -11.87535 -11.54216 -11.33098 -11.13073 -11.02097 -10.87805 -10.67944 -10.54157 -10.48567 -10.46027 -10.23159 -9.62933 -8.96624 -8.68288 -8.66451 -7.92689 -6.17307 -4.17341 2.49585 2.57711 3.17669 3.25980 3.31961 3.34665 3.78900 4.33418 4.52300 4.66910 4.68600 4.75597 5.03322 5.16557 5.23206 5.27645 5.30715 5.42886 5.52156 5.55683 5.56714 5.70168 5.73832 5.75932 5.82891 5.92689 5.97681 6.03173 6.07862 6.09139 6.14210 6.35680 6.45134 6.53178 6.58158 6.83674 7.12641 7.28281 7.49554 7.94331 8.05216 8.32612 8.57711 8.83257 9.42409 10.95313 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017943 B = 0.005681 C = 0.004716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.089976 B = 4927.676947 C = 5936.397815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.106 3.894 3 N -0.574 5.574 4 C 0.213 3.787 5 C -0.534 4.534 6 H 0.077 0.923 7 C 0.077 3.923 8 N -0.894 5.894 9 Si 0.874 3.126 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.265 1.265 13 C 0.511 3.489 14 O -0.516 6.516 15 C 0.520 3.480 16 O -0.527 6.527 17 N -0.597 5.597 18 C 0.102 3.898 19 C -0.129 4.129 20 C -0.093 4.093 21 C -0.146 4.146 22 C -0.129 4.129 23 C 0.110 3.890 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.092 0.908 28 H 0.063 0.937 29 H 0.036 0.964 30 H 0.040 0.960 31 H 0.266 0.734 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.053 0.947 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.092 0.908 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.626 -6.984 13.749 15.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.018 4.018 3 N -0.307 5.307 4 C 0.093 3.907 5 C -0.572 4.572 6 H 0.095 0.905 7 C -0.127 4.127 8 N -0.531 5.531 9 Si 0.701 3.299 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.190 1.190 13 C 0.292 3.708 14 O -0.391 6.391 15 C 0.304 3.696 16 O -0.402 6.402 17 N -0.332 5.332 18 C -0.020 4.020 19 C -0.167 4.167 20 C -0.112 4.112 21 C -0.203 4.203 22 C -0.167 4.167 23 C -0.012 4.012 24 H 0.083 0.917 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.110 0.890 28 H 0.081 0.919 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.116 0.884 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.110 0.890 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.921 -6.353 13.814 15.483 hybrid contribution -0.290 0.498 -0.718 0.921 sum -3.211 -5.855 13.096 14.700 Atomic orbital electron populations 1.22268 0.95980 1.01937 1.02996 1.21512 0.94179 0.83004 1.03076 1.48014 1.62247 1.13539 1.06902 1.19813 0.97208 0.94129 0.79538 1.21247 0.93475 1.34579 1.07893 0.90541 1.24808 0.94868 0.95538 0.97442 1.69873 1.12247 1.45083 1.25946 0.86879 0.81146 0.81531 0.80372 1.19804 1.20978 1.18960 1.19878 0.78878 0.87546 0.84467 1.90776 1.46832 1.15256 1.86245 1.20719 0.84822 0.77689 0.86410 1.90707 1.22463 1.58161 1.68909 1.48147 1.09085 1.57272 1.18722 1.22007 0.80552 1.02100 0.97368 1.22042 0.99678 1.00470 0.94515 1.21147 0.94712 1.00166 0.95143 1.21816 0.98900 1.00980 0.98620 1.21991 0.94578 1.01953 0.98205 1.21639 1.00936 0.96896 0.81717 0.91722 0.92214 0.91901 0.88973 0.91871 0.94615 0.94182 0.92428 0.90621 0.88352 0.91065 0.90227 0.90948 0.92815 0.92497 0.92658 0.91355 0.90720 0.88987 0.91185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.57 10.21 37.16 0.38 -2.20 16 2 C 0.11 1.76 5.95 -4.04 -0.02 1.74 16 3 N -0.57 -11.97 2.46 -175.57 -0.43 -12.40 16 4 C 0.21 5.07 4.25 -5.19 -0.02 5.05 16 5 C -0.53 -14.46 9.94 -34.44 -0.34 -14.81 16 6 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 7 C 0.08 2.13 5.47 -17.82 -0.10 2.04 16 8 N -0.89 -26.29 13.96 55.43 0.77 -25.52 16 9 Si 0.87 20.91 27.47 -169.99 -4.67 16.24 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.26 -6.00 6.54 56.52 0.37 -5.63 16 13 C 0.51 11.06 5.42 -11.58 -0.06 10.99 16 14 O -0.52 -12.95 16.65 5.49 0.09 -12.86 16 15 C 0.52 9.71 5.67 -11.58 -0.07 9.65 16 16 O -0.53 -10.46 15.44 5.50 0.08 -10.38 16 17 N -0.60 -9.05 2.97 -173.01 -0.51 -9.56 16 18 C 0.10 1.50 6.38 -3.49 -0.02 1.47 16 19 C -0.13 -1.61 5.38 -26.39 -0.14 -1.75 16 20 C -0.09 -0.92 2.68 -90.58 -0.24 -1.16 16 21 C -0.15 -1.27 9.19 37.16 0.34 -0.93 16 22 C -0.13 -1.29 5.36 -26.61 -0.14 -1.44 16 23 C 0.11 1.30 6.42 -3.71 -0.02 1.28 16 24 H 0.06 1.06 7.02 -51.93 -0.36 0.70 16 25 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.09 1.49 8.04 -51.93 -0.42 1.07 16 28 H 0.06 0.97 6.95 -51.93 -0.36 0.61 16 29 H 0.04 0.81 7.13 -51.93 -0.37 0.44 16 30 H 0.04 1.02 6.79 -51.93 -0.35 0.67 16 31 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.10 1.82 6.31 -51.93 -0.33 1.49 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.09 1.16 7.04 -51.94 -0.37 0.80 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 345.37 15.07 5.20 5.20 Total: -1.00 -32.14 345.37 -7.15 -39.29 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -7.22 Total: 0.05 kcal Atomic # 6 Polarization: 10.41 SS G_CDS: -0.47 Total: 9.94 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: -0.17 Total: -47.49 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: 0.18 Total: -23.24 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.67 Total: 16.24 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.14 -7.15 -39.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330423537.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.650 kcal (2) G-P(sol) polarization free energy of solvation -32.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds