Wall clock time and date at job start Tue Mar 31 2020 05:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47194 * 2 1 4 4 C 1.46502 * 119.99588 * 265.23277 * 3 2 1 5 5 C 1.50697 * 109.47431 * 269.99691 * 4 3 2 6 6 H 1.08008 * 119.99481 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00351 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00354 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00135 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47319 * 89.99719 * 9 7 5 11 11 H 1.48500 * 109.47313 * 209.99932 * 9 7 5 12 12 H 1.48501 * 109.47228 * 329.99901 * 9 7 5 13 13 C 1.34776 * 120.00443 * 85.22766 * 3 2 1 14 14 O 1.21346 * 120.00248 * 185.19269 * 13 3 2 15 15 C 1.49450 * 119.99448 * 5.19899 * 13 3 2 16 16 O 1.21351 * 119.99706 * 274.90169 * 15 13 3 17 17 N 1.34780 * 120.00304 * 95.18974 * 15 13 3 18 18 C 1.46920 * 120.62757 * 4.56916 * 17 15 13 19 19 C 1.52768 * 109.00897 * 233.58695 * 18 17 15 20 20 C 1.53030 * 109.38084 * 305.59268 * 19 18 17 21 21 C 1.53040 * 109.54263 * 61.24125 * 20 19 18 22 22 H 1.09004 * 109.49854 * 58.58187 * 21 20 19 23 23 C 1.52998 * 109.50180 * 178.68186 * 21 20 19 24 24 C 1.46917 * 120.62782 * 184.85656 * 17 15 13 25 25 H 1.09007 * 109.47296 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47233 * 300.00418 * 1 2 3 27 27 H 1.09005 * 109.47385 * 60.00381 * 1 2 3 28 28 H 1.09001 * 109.47233 * 239.99582 * 2 1 3 29 29 H 1.09005 * 109.47385 * 119.99619 * 2 1 3 30 30 H 1.08997 * 109.47384 * 29.99916 * 4 3 2 31 31 H 1.09003 * 109.46949 * 149.99989 * 4 3 2 32 32 H 0.96995 * 120.00841 * 180.02562 * 8 7 5 33 33 H 1.08996 * 109.59149 * 353.42324 * 18 17 15 34 34 H 1.08997 * 109.58533 * 113.84856 * 18 17 15 35 35 H 1.09000 * 109.56200 * 185.55441 * 19 18 17 36 36 H 1.08998 * 109.35525 * 65.50405 * 19 18 17 37 37 H 1.08998 * 109.46593 * 301.21284 * 20 19 18 38 38 H 1.09001 * 109.46081 * 181.25871 * 20 19 18 39 39 H 1.08996 * 109.47291 * 179.83538 * 23 21 20 40 40 H 1.08998 * 109.46993 * 299.83788 * 23 21 20 41 41 H 1.09003 * 109.47287 * 59.83525 * 23 21 20 42 42 H 1.09000 * 109.58510 * 246.15052 * 24 17 15 43 43 H 1.08998 * 109.59680 * 6.43522 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3619 2.0366 -1.2644 5 6 3.8146 1.7894 -1.5799 6 1 4.4212 1.2024 -0.9061 7 6 4.3693 2.3126 -2.7286 8 7 3.6308 3.0278 -3.5488 9 14 6.1698 2.0056 -3.1199 10 1 6.2971 0.7622 -3.9218 11 1 6.7105 3.1515 -3.8944 12 1 6.9334 1.8589 -1.8547 13 6 2.1514 2.0490 1.1631 14 8 2.4651 3.2212 1.1573 15 6 1.9127 1.3457 2.4600 16 8 0.7865 1.2546 2.9025 17 7 2.9490 0.8176 3.1410 18 6 4.3284 1.0110 2.6734 19 6 5.0064 -0.3520 2.5463 20 6 4.8922 -1.1019 3.8754 21 6 3.4161 -1.3244 4.2124 22 1 2.9413 -1.8907 3.4111 23 6 3.3035 -2.1029 5.5247 24 6 2.7203 0.0323 4.3614 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.7423 1.6308 -2.0641 31 1 2.1864 3.1089 -1.1773 32 1 4.0209 3.3955 -4.3571 33 1 4.3190 1.5048 1.7017 34 1 4.8751 1.6225 3.3911 35 1 6.0582 -0.2145 2.2954 36 1 4.5167 -0.9274 1.7607 37 1 5.3605 -0.5146 4.6653 38 1 5.3951 -2.0655 3.7931 39 1 2.2520 -2.2586 5.7658 40 1 3.7986 -3.0681 5.4183 41 1 3.7797 -1.5366 6.3252 42 1 3.1333 0.5624 5.2197 43 1 1.6502 -0.1173 4.5047 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330433166.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:52 Heat of formation + Delta-G solvation = -82.429636 kcal Electronic energy + Delta-G solvation = -23866.530564 eV Core-core repulsion = 20525.288937 eV Total energy + Delta-G solvation = -3341.241627 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.57710 -38.59171 -37.29755 -35.48874 -33.84324 -32.84053 -31.91287 -30.16633 -27.97591 -26.94251 -25.83559 -23.83190 -23.04952 -22.34961 -21.46667 -19.97379 -18.31377 -17.33310 -16.51314 -16.46430 -15.97688 -15.26735 -14.75444 -14.68200 -14.39888 -14.22928 -14.10552 -13.55832 -13.37032 -13.08238 -12.87607 -12.72300 -12.45737 -12.17700 -12.11235 -11.88880 -11.74421 -11.30157 -11.19594 -11.07297 -10.97522 -10.90195 -10.72070 -10.64681 -10.53633 -10.49753 -10.20968 -9.74006 -8.87573 -8.65060 -8.51270 -7.85058 -6.12101 -4.18226 2.51060 2.64711 3.24566 3.26834 3.32110 3.34260 3.88069 4.36295 4.51672 4.63164 4.68327 4.78973 4.94943 5.19564 5.22661 5.28725 5.36023 5.37355 5.44188 5.55968 5.60018 5.64323 5.69720 5.80365 5.84809 5.87235 5.95005 6.01322 6.06071 6.08753 6.23892 6.28411 6.48036 6.59115 6.90612 7.28497 7.31590 7.39128 7.82253 8.06562 8.12276 8.16057 8.62939 8.86927 9.46918 10.96140 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017185 B = 0.005978 C = 0.005056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.949126 B = 4682.633601 C = 5536.679118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.107 3.893 3 N -0.576 5.576 4 C 0.243 3.757 5 C -0.531 4.531 6 H 0.059 0.941 7 C 0.064 3.936 8 N -0.891 5.891 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.273 1.273 13 C 0.508 3.492 14 O -0.518 6.518 15 C 0.519 3.481 16 O -0.526 6.526 17 N -0.599 5.599 18 C 0.103 3.897 19 C -0.135 4.135 20 C -0.114 4.114 21 C -0.107 4.107 22 H 0.076 0.924 23 C -0.143 4.143 24 C 0.115 3.885 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.089 0.911 29 H 0.059 0.941 30 H 0.038 0.962 31 H 0.047 0.953 32 H 0.265 0.735 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.068 0.932 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.017 -11.478 13.760 17.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.017 4.017 3 N -0.309 5.309 4 C 0.125 3.875 5 C -0.569 4.569 6 H 0.077 0.923 7 C -0.139 4.139 8 N -0.529 5.529 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 C 0.289 3.711 14 O -0.394 6.394 15 C 0.303 3.697 16 O -0.401 6.401 17 N -0.334 5.334 18 C -0.020 4.020 19 C -0.173 4.173 20 C -0.151 4.151 21 C -0.127 4.127 22 H 0.094 0.906 23 C -0.201 4.201 24 C -0.007 4.007 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.108 0.892 29 H 0.077 0.923 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.115 0.885 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.571 -10.763 13.776 17.491 hybrid contribution 1.054 -0.168 -0.350 1.123 sum 1.624 -10.931 13.426 17.389 Atomic orbital electron populations 1.22266 0.96042 1.01748 1.03116 1.21475 0.94229 0.83423 1.02590 1.48312 1.61694 1.13311 1.07600 1.19444 0.95898 0.94550 0.77627 1.21359 0.95094 1.33709 1.06781 0.92288 1.24924 0.98219 0.94766 0.95983 1.69926 1.36215 1.34257 1.12540 0.86496 0.84680 0.77801 0.78438 1.20591 1.21052 1.19806 1.19825 0.79241 0.87530 0.84478 1.90779 1.47155 1.15182 1.86286 1.20867 0.84804 0.77839 0.86188 1.90702 1.22372 1.57634 1.69396 1.48101 1.06865 1.51965 1.26484 1.21785 0.80867 0.97614 1.01698 1.21842 1.01410 0.96055 0.98002 1.21600 0.95608 1.00540 0.97390 1.21520 0.96514 0.95905 0.98722 0.90585 1.21752 1.01976 0.99901 0.96502 1.21696 1.02187 0.90656 0.86147 0.92134 0.91773 0.92036 0.89238 0.92278 0.94402 0.93451 0.92558 0.88509 0.90969 0.90245 0.91027 0.91759 0.91593 0.92408 0.92304 0.92507 0.91422 0.88971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.72 10.21 37.15 0.38 -2.34 16 2 C 0.11 1.84 5.94 -4.04 -0.02 1.81 16 3 N -0.58 -12.40 2.47 -175.57 -0.43 -12.83 16 4 C 0.24 6.20 5.18 -5.19 -0.03 6.18 16 5 C -0.53 -14.22 9.38 -34.44 -0.32 -14.54 16 6 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -25.67 13.29 55.43 0.74 -24.93 16 9 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 12 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 13 C 0.51 11.27 5.43 -11.59 -0.06 11.20 16 14 O -0.52 -13.38 16.62 5.50 0.09 -13.29 16 15 C 0.52 9.88 5.68 -11.58 -0.07 9.82 16 16 O -0.53 -10.69 15.34 5.50 0.08 -10.61 16 17 N -0.60 -9.14 2.98 -173.54 -0.52 -9.66 16 18 C 0.10 1.48 6.33 -3.93 -0.02 1.45 16 19 C -0.13 -1.56 6.06 -26.83 -0.16 -1.72 16 20 C -0.11 -1.05 5.17 -26.70 -0.14 -1.19 16 21 C -0.11 -1.03 2.87 -90.50 -0.26 -1.29 16 22 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 23 C -0.14 -1.07 9.20 37.16 0.34 -0.73 16 24 C 0.12 1.38 5.71 -3.71 -0.02 1.36 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.06 1.11 6.92 -51.93 -0.36 0.75 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.09 1.50 8.04 -51.93 -0.42 1.08 16 29 H 0.06 0.93 6.97 -51.93 -0.36 0.57 16 30 H 0.04 0.98 8.07 -51.93 -0.42 0.56 16 31 H 0.05 1.37 7.36 -51.93 -0.38 0.99 16 32 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 33 H 0.10 1.73 6.29 -51.93 -0.33 1.40 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.09 1.19 7.04 -51.93 -0.37 0.82 16 LS Contribution 348.68 15.07 5.25 5.25 Total: -1.00 -31.68 348.68 -7.54 -39.22 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -7.25 Total: -0.62 kcal Atomic # 6 Polarization: 12.14 SS G_CDS: -0.49 Total: 11.66 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: -0.21 Total: -47.42 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: 0.18 Total: -23.90 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.68 -7.54 -39.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330433166.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.210 kcal (2) G-P(sol) polarization free energy of solvation -31.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds