Wall clock time and date at job start Tue Mar 31 2020 05:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47194 * 2 1 4 4 C 1.46502 * 119.99588 * 265.23277 * 3 2 1 5 5 C 1.50697 * 109.47431 * 269.99691 * 4 3 2 6 6 H 1.08008 * 119.99481 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00351 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00354 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00135 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47319 * 89.99719 * 9 7 5 11 11 H 1.48500 * 109.47313 * 209.99932 * 9 7 5 12 12 H 1.48501 * 109.47228 * 329.99901 * 9 7 5 13 13 C 1.34776 * 120.00443 * 85.22766 * 3 2 1 14 14 O 1.21346 * 120.00248 * 185.19269 * 13 3 2 15 15 C 1.49450 * 119.99448 * 5.19899 * 13 3 2 16 16 O 1.21351 * 119.99706 * 274.90169 * 15 13 3 17 17 N 1.34780 * 120.00304 * 95.18974 * 15 13 3 18 18 C 1.46920 * 120.62757 * 4.56916 * 17 15 13 19 19 C 1.52768 * 109.00897 * 233.58695 * 18 17 15 20 20 C 1.53030 * 109.38084 * 305.59268 * 19 18 17 21 21 C 1.53040 * 109.54263 * 61.24125 * 20 19 18 22 22 H 1.09004 * 109.49854 * 58.58187 * 21 20 19 23 23 C 1.52998 * 109.50180 * 178.68186 * 21 20 19 24 24 C 1.46917 * 120.62782 * 184.85656 * 17 15 13 25 25 H 1.09007 * 109.47296 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47233 * 300.00418 * 1 2 3 27 27 H 1.09005 * 109.47385 * 60.00381 * 1 2 3 28 28 H 1.09001 * 109.47233 * 239.99582 * 2 1 3 29 29 H 1.09005 * 109.47385 * 119.99619 * 2 1 3 30 30 H 1.08997 * 109.47384 * 29.99916 * 4 3 2 31 31 H 1.09003 * 109.46949 * 149.99989 * 4 3 2 32 32 H 0.96995 * 120.00841 * 180.02562 * 8 7 5 33 33 H 1.08996 * 109.59149 * 353.42324 * 18 17 15 34 34 H 1.08997 * 109.58533 * 113.84856 * 18 17 15 35 35 H 1.09000 * 109.56200 * 185.55441 * 19 18 17 36 36 H 1.08998 * 109.35525 * 65.50405 * 19 18 17 37 37 H 1.08998 * 109.46593 * 301.21284 * 20 19 18 38 38 H 1.09001 * 109.46081 * 181.25871 * 20 19 18 39 39 H 1.08996 * 109.47291 * 179.83538 * 23 21 20 40 40 H 1.08998 * 109.46993 * 299.83788 * 23 21 20 41 41 H 1.09003 * 109.47287 * 59.83525 * 23 21 20 42 42 H 1.09000 * 109.58510 * 246.15052 * 24 17 15 43 43 H 1.08998 * 109.59680 * 6.43522 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3619 2.0366 -1.2644 5 6 3.8146 1.7894 -1.5799 6 1 4.4212 1.2024 -0.9061 7 6 4.3693 2.3126 -2.7286 8 7 3.6308 3.0278 -3.5488 9 14 6.1698 2.0056 -3.1199 10 1 6.2971 0.7622 -3.9218 11 1 6.7105 3.1515 -3.8944 12 1 6.9334 1.8589 -1.8547 13 6 2.1514 2.0490 1.1631 14 8 2.4651 3.2212 1.1573 15 6 1.9127 1.3457 2.4600 16 8 0.7865 1.2546 2.9025 17 7 2.9490 0.8176 3.1410 18 6 4.3284 1.0110 2.6734 19 6 5.0064 -0.3520 2.5463 20 6 4.8922 -1.1019 3.8754 21 6 3.4161 -1.3244 4.2124 22 1 2.9413 -1.8907 3.4111 23 6 3.3035 -2.1029 5.5247 24 6 2.7203 0.0323 4.3614 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.7423 1.6308 -2.0641 31 1 2.1864 3.1089 -1.1773 32 1 4.0209 3.3955 -4.3571 33 1 4.3190 1.5048 1.7017 34 1 4.8751 1.6225 3.3911 35 1 6.0582 -0.2145 2.2954 36 1 4.5167 -0.9274 1.7607 37 1 5.3605 -0.5146 4.6653 38 1 5.3951 -2.0655 3.7931 39 1 2.2520 -2.2586 5.7658 40 1 3.7986 -3.0681 5.4183 41 1 3.7797 -1.5366 6.3252 42 1 3.1333 0.5624 5.2197 43 1 1.6502 -0.1173 4.5047 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330433166.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:52 Heat of formation + Delta-G solvation = -102.220912 kcal Electronic energy + Delta-G solvation = -23867.388778 eV Core-core repulsion = 20525.288937 eV Total energy + Delta-G solvation = -3342.099841 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.06207 -40.03791 -38.65682 -37.26405 -34.93425 -34.84463 -32.89556 -31.79746 -29.71738 -28.06465 -27.06545 -25.50666 -24.61761 -23.33717 -22.95028 -20.94000 -19.77702 -18.94047 -18.48319 -18.03851 -17.61370 -16.64483 -16.15100 -16.00370 -15.86987 -15.46755 -15.28748 -14.85409 -14.76186 -14.43528 -14.30039 -14.08810 -13.79572 -13.53109 -13.36171 -13.16299 -12.98713 -12.88944 -12.70545 -12.59668 -12.42850 -12.19145 -12.04354 -11.96343 -11.82106 -11.74382 -11.61741 -11.30657 -10.63621 -10.57089 -9.87077 -9.69266 -8.22388 -6.37433 0.98780 1.08917 1.41205 1.43553 1.53783 1.63062 2.30989 2.45653 3.07170 3.14898 3.70017 3.85995 3.87528 3.95287 3.99440 4.23932 4.25685 4.37399 4.45420 4.51258 4.67202 4.74033 4.77061 4.80208 4.83536 4.86360 4.93691 4.95311 5.09392 5.15529 5.18468 5.23577 5.27263 5.31805 5.40511 5.46307 5.53322 5.73236 5.93822 6.00497 6.35638 6.64154 6.68290 6.91991 7.33229 8.86081 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017185 B = 0.005978 C = 0.005056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.949126 B = 4682.633601 C = 5536.679118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.103 3.897 3 N -0.576 5.576 4 C 0.258 3.742 5 C -0.540 4.540 6 H 0.064 0.936 7 C 0.010 3.990 8 N -0.929 5.929 9 Si 0.969 3.031 10 H -0.265 1.265 11 H -0.286 1.286 12 H -0.264 1.264 13 C 0.502 3.498 14 O -0.568 6.568 15 C 0.525 3.475 16 O -0.544 6.544 17 N -0.586 5.586 18 C 0.099 3.901 19 C -0.130 4.130 20 C -0.107 4.107 21 C -0.101 4.101 22 H 0.067 0.933 23 C -0.138 4.138 24 C 0.110 3.890 25 H 0.097 0.903 26 H 0.047 0.953 27 H 0.050 0.950 28 H 0.096 0.904 29 H 0.077 0.923 30 H 0.030 0.970 31 H 0.002 0.998 32 H 0.267 0.733 33 H 0.056 0.944 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.059 0.941 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.057 0.943 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.087 0.913 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.780 -14.234 15.431 21.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.019 4.019 3 N -0.308 5.308 4 C 0.138 3.862 5 C -0.579 4.579 6 H 0.082 0.918 7 C -0.189 4.189 8 N -0.568 5.568 9 Si 0.793 3.207 10 H -0.190 1.190 11 H -0.211 1.211 12 H -0.188 1.188 13 C 0.284 3.716 14 O -0.448 6.448 15 C 0.307 3.693 16 O -0.421 6.421 17 N -0.320 5.320 18 C -0.023 4.023 19 C -0.168 4.168 20 C -0.145 4.145 21 C -0.121 4.121 22 H 0.086 0.914 23 C -0.196 4.196 24 C -0.010 4.010 25 H 0.116 0.884 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.115 0.885 29 H 0.096 0.904 30 H 0.048 0.952 31 H 0.020 0.980 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.104 0.896 39 H 0.076 0.924 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.105 0.895 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.341 -13.588 15.481 20.731 hybrid contribution 0.480 0.702 -0.845 1.199 sum 2.821 -12.886 14.636 19.703 Atomic orbital electron populations 1.22194 0.94583 1.03763 1.01745 1.21743 0.95368 0.81018 1.03777 1.48308 1.61282 1.14833 1.06364 1.18973 0.95797 0.92230 0.79232 1.21608 0.95574 1.33728 1.06970 0.91760 1.25862 1.03023 0.94273 0.95735 1.70061 1.38390 1.35267 1.13096 0.85389 0.78749 0.78024 0.78549 1.18971 1.21133 1.18802 1.20492 0.78086 0.87163 0.85823 1.90730 1.49391 1.17391 1.87245 1.20151 0.85504 0.78383 0.85249 1.90694 1.23063 1.58837 1.69515 1.48178 1.06287 1.50762 1.26752 1.21898 0.80663 0.99673 1.00107 1.21829 1.01459 0.94129 0.99354 1.21592 0.95464 1.01349 0.96070 1.21494 0.96393 0.94275 0.99893 0.91411 1.21715 1.02416 1.00210 0.95236 1.22037 1.02359 0.91794 0.84844 0.88384 0.93435 0.93035 0.88546 0.90421 0.95164 0.98019 0.92375 0.92542 0.89131 0.89027 0.92171 0.90394 0.89609 0.92351 0.91034 0.91509 0.89469 0.89851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.08 10.21 71.98 0.73 -4.34 16 2 C 0.10 3.53 5.94 86.38 0.51 4.04 16 3 N -0.58 -25.72 2.47 -827.74 -2.04 -27.77 16 4 C 0.26 13.83 5.18 85.63 0.44 14.27 16 5 C -0.54 -29.66 9.38 25.60 0.24 -29.42 16 6 H 0.06 3.38 7.81 -2.91 -0.02 3.36 16 7 C 0.01 0.58 5.46 84.65 0.46 1.04 16 8 N -0.93 -54.91 13.29 21.44 0.28 -54.62 16 9 Si 0.97 42.65 29.54 68.60 2.03 44.68 16 10 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 11 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 12 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 13 C 0.50 23.20 5.43 87.27 0.47 23.67 16 14 O -0.57 -31.14 16.62 -3.23 -0.05 -31.19 16 15 C 0.52 20.18 5.68 87.27 0.50 20.67 16 16 O -0.54 -22.24 15.34 -3.25 -0.05 -22.29 16 17 N -0.59 -17.36 2.98 -821.33 -2.45 -19.81 16 18 C 0.10 2.74 6.33 86.22 0.55 3.29 16 19 C -0.13 -2.68 6.06 30.53 0.19 -2.50 16 20 C -0.11 -1.57 5.17 30.62 0.16 -1.41 16 21 C -0.10 -1.61 2.87 -10.71 -0.03 -1.64 16 22 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 23 C -0.14 -1.53 9.20 71.98 0.66 -0.86 16 24 C 0.11 2.38 5.71 86.37 0.49 2.88 16 25 H 0.10 2.28 8.14 -2.38 -0.02 2.26 16 26 H 0.05 1.63 6.92 -2.39 -0.02 1.62 16 27 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 28 H 0.10 3.17 8.04 -2.39 -0.02 3.15 16 29 H 0.08 2.37 6.97 -2.38 -0.02 2.35 16 30 H 0.03 1.64 8.07 -2.39 -0.02 1.62 16 31 H 0.00 0.10 7.36 -2.39 -0.02 0.09 16 32 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 33 H 0.06 2.06 6.29 -2.39 -0.02 2.04 16 34 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.08 2.00 7.04 -2.39 -0.02 1.98 16 Total: -1.00 -71.87 348.68 4.07 -67.80 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: 0.97 Total: 13.51 kcal Atomic # 6 Polarization: 24.31 SS G_CDS: 5.38 Total: 29.69 kcal Atomic # 7 Polarization: -97.99 SS G_CDS: -4.20 Total: -102.20 kcal Atomic # 8 Polarization: -53.38 SS G_CDS: -0.10 Total: -53.49 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -71.87 4.07 -67.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330433166.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.422 kcal (2) G-P(sol) polarization free energy of solvation -71.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds