Wall clock time and date at job start Tue Mar 31 2020 05:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46492 * 109.47197 * 2 1 4 4 C 1.46500 * 119.99996 * 265.65874 * 3 2 1 5 5 C 1.50707 * 109.47120 * 89.99758 * 4 3 2 6 6 H 1.08003 * 119.99417 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00099 * 179.97438 * 5 4 3 8 8 N 1.31511 * 119.99827 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99945 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46797 * 359.97438 * 9 7 5 11 11 H 1.48491 * 109.47407 * 119.99991 * 9 7 5 12 12 H 1.48496 * 109.46808 * 240.00329 * 9 7 5 13 13 C 1.34770 * 120.00147 * 85.66187 * 3 2 1 14 14 O 1.21357 * 120.00268 * 185.05924 * 13 3 2 15 15 C 1.49453 * 120.00121 * 5.05792 * 13 3 2 16 16 O 1.21348 * 120.00059 * 274.49945 * 15 13 3 17 17 N 1.34780 * 119.99792 * 94.49661 * 15 13 3 18 18 C 1.46920 * 120.63124 * 354.66040 * 17 15 13 19 19 C 1.53624 * 108.54813 * 126.36717 * 18 17 15 20 20 C 1.53045 * 109.23866 * 54.85249 * 19 18 17 21 21 C 1.53037 * 109.53668 * 298.51307 * 20 19 18 22 22 H 1.09000 * 109.50382 * 301.41457 * 21 20 19 23 23 C 1.53002 * 109.49791 * 181.31744 * 21 20 19 24 24 C 1.46930 * 120.62731 * 174.93571 * 17 15 13 25 25 H 1.09004 * 109.47058 * 60.00413 * 1 2 3 26 26 H 1.08995 * 109.47338 * 300.00076 * 1 2 3 27 27 H 1.09002 * 109.46809 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46796 * 120.00325 * 2 1 3 29 29 H 1.09003 * 109.46905 * 239.99501 * 2 1 3 30 30 H 1.08996 * 109.47414 * 210.00004 * 4 3 2 31 31 H 1.08999 * 109.47043 * 330.00476 * 4 3 2 32 32 H 0.97009 * 119.99813 * 179.97438 * 8 7 5 33 33 H 1.09007 * 109.58521 * 246.20052 * 18 17 15 34 34 H 1.09001 * 109.59129 * 6.62176 * 18 17 15 35 35 H 1.09001 * 109.63037 * 294.86892 * 19 18 17 36 36 H 1.08996 * 109.46308 * 174.73662 * 19 18 17 37 37 H 1.09000 * 109.45496 * 178.49522 * 20 19 18 38 38 H 1.08992 * 109.45947 * 58.53365 * 20 19 18 39 39 H 1.09000 * 109.46963 * 300.16324 * 23 21 20 40 40 H 1.09004 * 109.46994 * 60.15802 * 23 21 20 41 41 H 1.08999 * 109.47589 * 180.16515 * 23 21 20 42 42 H 1.08991 * 109.58666 * 353.37489 * 24 17 15 43 43 H 1.09000 * 109.58382 * 113.65946 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.3531 2.0397 -1.2651 5 6 1.1321 2.7378 -1.8065 6 1 0.2001 2.6954 -1.2623 7 6 1.2050 3.4314 -2.9959 8 7 2.3400 3.4833 -3.6581 9 14 -0.3083 4.2972 -3.6665 10 1 -1.4498 4.0875 -2.7401 11 1 -0.0322 5.7509 -3.7916 12 1 -0.6460 3.7408 -5.0012 13 6 2.1597 2.0459 1.1638 14 8 2.4758 3.2176 1.1588 15 6 1.9273 1.3402 2.4605 16 8 0.8045 1.2569 2.9132 17 7 2.9647 0.7963 3.1271 18 6 4.3105 0.7860 2.5378 19 6 5.2876 1.4194 3.5399 20 6 5.1826 0.6860 4.8790 21 6 3.7634 0.8321 5.4326 22 1 3.5276 1.8892 5.5553 23 6 3.6683 0.1264 6.7869 24 6 2.7701 0.1969 4.4545 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 3.1443 2.7701 -1.0963 31 1 2.6939 1.2944 -1.9837 32 1 2.3913 3.9710 -4.4952 33 1 4.6106 -0.2411 2.3301 34 1 4.3088 1.3625 1.6127 35 1 5.0375 2.4710 3.6804 36 1 6.3050 1.3353 3.1578 37 1 5.8937 1.1154 5.5848 38 1 5.4086 -0.3702 4.7332 39 1 3.9056 -0.9302 6.6634 40 1 4.3753 0.5786 7.4825 41 1 2.6566 0.2282 7.1794 42 1 1.7517 0.3847 4.7944 43 1 2.9447 -0.8776 4.3993 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330433167.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:54 Heat of formation + Delta-G solvation = -80.658735 kcal Electronic energy + Delta-G solvation = -23532.714346 eV Core-core repulsion = 20191.549511 eV Total energy + Delta-G solvation = -3341.164835 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.59259 -38.61912 -37.30790 -35.47925 -33.90626 -32.73770 -31.94630 -30.05450 -28.03747 -26.94791 -25.91752 -23.88031 -22.79519 -22.45260 -21.57361 -20.01865 -18.33409 -17.39035 -16.59866 -16.36053 -16.05552 -15.29526 -14.84845 -14.54631 -14.46455 -14.27650 -13.94252 -13.62110 -13.29513 -13.04442 -12.90215 -12.79348 -12.39411 -12.22825 -12.17345 -11.95355 -11.58883 -11.29486 -11.25413 -11.06964 -11.02504 -10.87000 -10.77256 -10.64782 -10.57200 -10.48409 -10.06834 -9.60765 -8.86011 -8.72014 -8.45431 -7.86057 -6.07076 -4.10655 2.52394 2.63492 3.15827 3.30600 3.38569 3.44868 3.89047 4.43070 4.47785 4.61049 4.61609 4.74352 4.84112 5.09097 5.23259 5.28330 5.30901 5.36418 5.39320 5.49532 5.53009 5.62577 5.68801 5.72863 5.79394 5.85552 5.89773 5.94942 5.97889 6.15839 6.21067 6.39423 6.45014 6.80671 6.91769 7.23973 7.27215 7.39685 7.89350 8.05925 8.14437 8.18568 8.64623 8.94671 9.54287 11.01347 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028882 B = 0.004430 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.225963 B = 6319.487773 C = 6649.111073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.110 3.890 3 N -0.579 5.579 4 C 0.245 3.755 5 C -0.524 4.524 6 H 0.062 0.938 7 C 0.062 3.938 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.507 3.493 14 O -0.513 6.513 15 C 0.518 3.482 16 O -0.519 6.519 17 N -0.602 5.602 18 C 0.106 3.894 19 C -0.136 4.136 20 C -0.113 4.113 21 C -0.109 4.109 22 H 0.076 0.924 23 C -0.144 4.144 24 C 0.116 3.884 25 H 0.074 0.926 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.083 0.917 30 H 0.045 0.955 31 H 0.039 0.961 32 H 0.263 0.737 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.092 0.908 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.258 -11.075 15.505 20.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.013 4.013 3 N -0.312 5.312 4 C 0.127 3.873 5 C -0.563 4.563 6 H 0.080 0.920 7 C -0.140 4.140 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.210 1.210 13 C 0.288 3.712 14 O -0.388 6.388 15 C 0.302 3.698 16 O -0.394 6.394 17 N -0.338 5.338 18 C -0.017 4.017 19 C -0.174 4.174 20 C -0.151 4.151 21 C -0.129 4.129 22 H 0.094 0.906 23 C -0.201 4.201 24 C -0.006 4.006 25 H 0.093 0.907 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.102 0.898 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.107 0.893 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.110 0.890 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.887 -10.410 15.531 19.602 hybrid contribution -0.800 0.525 -0.488 1.074 sum 5.087 -9.885 15.043 18.705 Atomic orbital electron populations 1.22256 0.95600 1.01283 1.04013 1.21458 0.95347 0.82918 1.01617 1.48388 1.61986 1.13355 1.07462 1.19449 0.97197 0.93173 0.77523 1.21479 0.96572 1.32289 1.05974 0.92009 1.24918 0.96327 0.96107 0.96667 1.69932 1.24897 1.42500 1.16146 0.86444 0.82973 0.79478 0.78607 1.19683 1.20855 1.20958 1.19824 0.79589 0.87489 0.84344 1.90793 1.47160 1.14705 1.86136 1.20919 0.84793 0.77544 0.86575 1.90720 1.22380 1.57451 1.68820 1.48140 1.08840 1.58055 1.18768 1.21894 0.81152 1.01603 0.97047 1.21995 0.99369 1.00762 0.95282 1.21590 0.96161 1.00728 0.96596 1.21534 0.95469 1.01017 0.94849 0.90577 1.21754 1.02056 1.00426 0.95900 1.21691 1.00857 0.96717 0.81370 0.90677 0.92048 0.92703 0.92541 0.89840 0.93726 0.94307 0.92756 0.90747 0.89345 0.90970 0.90388 0.91593 0.91692 0.92475 0.92331 0.92374 0.88955 0.91253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.02 10.21 37.16 0.38 -2.64 16 2 C 0.11 1.89 5.99 -4.05 -0.02 1.87 16 3 N -0.58 -12.39 2.46 -175.57 -0.43 -12.82 16 4 C 0.25 6.22 5.16 -5.19 -0.03 6.20 16 5 C -0.52 -14.77 9.15 -34.44 -0.31 -15.09 16 6 H 0.06 1.78 7.41 -52.48 -0.39 1.39 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.90 -26.14 13.29 55.43 0.74 -25.41 16 9 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 10 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 C 0.51 11.18 5.42 -11.59 -0.06 11.11 16 14 O -0.51 -13.26 16.73 5.49 0.09 -13.17 16 15 C 0.52 9.76 5.68 -11.58 -0.07 9.69 16 16 O -0.52 -10.82 15.42 5.50 0.08 -10.74 16 17 N -0.60 -8.63 2.97 -173.01 -0.51 -9.15 16 18 C 0.11 1.29 6.38 -3.49 -0.02 1.27 16 19 C -0.14 -1.38 6.10 -26.38 -0.16 -1.54 16 20 C -0.11 -0.95 5.16 -26.69 -0.14 -1.09 16 21 C -0.11 -1.03 2.87 -90.50 -0.26 -1.29 16 22 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 23 C -0.14 -1.04 9.20 37.16 0.34 -0.70 16 24 C 0.12 1.32 5.70 -3.71 -0.02 1.30 16 25 H 0.07 1.46 7.49 -51.93 -0.39 1.08 16 26 H 0.06 1.18 7.00 -51.93 -0.36 0.81 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.85 6.95 -51.93 -0.36 0.49 16 29 H 0.08 1.31 7.84 -51.93 -0.41 0.90 16 30 H 0.04 1.25 7.50 -51.93 -0.39 0.86 16 31 H 0.04 0.98 7.86 -51.93 -0.41 0.57 16 32 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.09 1.30 6.31 -51.93 -0.33 0.98 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.09 1.19 7.04 -51.93 -0.37 0.82 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 347.48 15.07 5.24 5.24 Total: -1.00 -33.16 347.48 -7.48 -40.63 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -7.19 Total: -2.31 kcal Atomic # 6 Polarization: 11.21 SS G_CDS: -0.47 Total: 10.74 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: -0.21 Total: -47.38 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: 0.18 Total: -23.91 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.16 -7.48 -40.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330433167.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.027 kcal (2) G-P(sol) polarization free energy of solvation -33.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds