Wall clock time and date at job start Tue Mar 31 2020 05:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46492 * 109.47197 * 2 1 4 4 C 1.46500 * 119.99996 * 265.65874 * 3 2 1 5 5 C 1.50707 * 109.47120 * 89.99758 * 4 3 2 6 6 H 1.08003 * 119.99417 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00099 * 179.97438 * 5 4 3 8 8 N 1.31511 * 119.99827 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99945 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46797 * 359.97438 * 9 7 5 11 11 H 1.48491 * 109.47407 * 119.99991 * 9 7 5 12 12 H 1.48496 * 109.46808 * 240.00329 * 9 7 5 13 13 C 1.34770 * 120.00147 * 85.66187 * 3 2 1 14 14 O 1.21357 * 120.00268 * 185.05924 * 13 3 2 15 15 C 1.49453 * 120.00121 * 5.05792 * 13 3 2 16 16 O 1.21348 * 120.00059 * 274.49945 * 15 13 3 17 17 N 1.34780 * 119.99792 * 94.49661 * 15 13 3 18 18 C 1.46920 * 120.63124 * 354.66040 * 17 15 13 19 19 C 1.53624 * 108.54813 * 126.36717 * 18 17 15 20 20 C 1.53045 * 109.23866 * 54.85249 * 19 18 17 21 21 C 1.53037 * 109.53668 * 298.51307 * 20 19 18 22 22 H 1.09000 * 109.50382 * 301.41457 * 21 20 19 23 23 C 1.53002 * 109.49791 * 181.31744 * 21 20 19 24 24 C 1.46930 * 120.62731 * 174.93571 * 17 15 13 25 25 H 1.09004 * 109.47058 * 60.00413 * 1 2 3 26 26 H 1.08995 * 109.47338 * 300.00076 * 1 2 3 27 27 H 1.09002 * 109.46809 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46796 * 120.00325 * 2 1 3 29 29 H 1.09003 * 109.46905 * 239.99501 * 2 1 3 30 30 H 1.08996 * 109.47414 * 210.00004 * 4 3 2 31 31 H 1.08999 * 109.47043 * 330.00476 * 4 3 2 32 32 H 0.97009 * 119.99813 * 179.97438 * 8 7 5 33 33 H 1.09007 * 109.58521 * 246.20052 * 18 17 15 34 34 H 1.09001 * 109.59129 * 6.62176 * 18 17 15 35 35 H 1.09001 * 109.63037 * 294.86892 * 19 18 17 36 36 H 1.08996 * 109.46308 * 174.73662 * 19 18 17 37 37 H 1.09000 * 109.45496 * 178.49522 * 20 19 18 38 38 H 1.08992 * 109.45947 * 58.53365 * 20 19 18 39 39 H 1.09000 * 109.46963 * 300.16324 * 23 21 20 40 40 H 1.09004 * 109.46994 * 60.15802 * 23 21 20 41 41 H 1.08999 * 109.47589 * 180.16515 * 23 21 20 42 42 H 1.08991 * 109.58666 * 353.37489 * 24 17 15 43 43 H 1.09000 * 109.58382 * 113.65946 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.3531 2.0397 -1.2651 5 6 1.1321 2.7378 -1.8065 6 1 0.2001 2.6954 -1.2623 7 6 1.2050 3.4314 -2.9959 8 7 2.3400 3.4833 -3.6581 9 14 -0.3083 4.2972 -3.6665 10 1 -1.4498 4.0875 -2.7401 11 1 -0.0322 5.7509 -3.7916 12 1 -0.6460 3.7408 -5.0012 13 6 2.1597 2.0459 1.1638 14 8 2.4758 3.2176 1.1588 15 6 1.9273 1.3402 2.4605 16 8 0.8045 1.2569 2.9132 17 7 2.9647 0.7963 3.1271 18 6 4.3105 0.7860 2.5378 19 6 5.2876 1.4194 3.5399 20 6 5.1826 0.6860 4.8790 21 6 3.7634 0.8321 5.4326 22 1 3.5276 1.8892 5.5553 23 6 3.6683 0.1264 6.7869 24 6 2.7701 0.1969 4.4545 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 3.1443 2.7701 -1.0963 31 1 2.6939 1.2944 -1.9837 32 1 2.3913 3.9710 -4.4952 33 1 4.6106 -0.2411 2.3301 34 1 4.3088 1.3625 1.6127 35 1 5.0375 2.4710 3.6804 36 1 6.3050 1.3353 3.1578 37 1 5.8937 1.1154 5.5848 38 1 5.4086 -0.3702 4.7332 39 1 3.9056 -0.9302 6.6634 40 1 4.3753 0.5786 7.4825 41 1 2.6566 0.2282 7.1794 42 1 1.7517 0.3847 4.7944 43 1 2.9447 -0.8776 4.3993 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330433167.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:54 Heat of formation + Delta-G solvation = -102.075850 kcal Electronic energy + Delta-G solvation = -23533.643062 eV Core-core repulsion = 20191.549511 eV Total energy + Delta-G solvation = -3342.093551 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.04249 -40.03103 -38.64433 -37.25737 -34.97590 -34.79870 -32.85039 -31.70970 -29.79162 -28.06014 -27.09721 -25.51694 -24.45522 -23.36757 -23.02065 -20.96277 -19.70353 -18.98432 -18.60650 -17.93883 -17.67222 -16.65041 -16.20191 -15.90102 -15.70760 -15.55475 -15.29149 -14.85951 -14.65761 -14.44022 -14.27824 -14.09097 -13.89560 -13.55107 -13.36049 -13.12246 -12.98790 -12.93772 -12.74507 -12.63526 -12.46280 -12.18913 -12.06204 -11.89093 -11.80467 -11.68459 -11.64536 -11.32881 -10.64819 -10.55476 -9.86012 -9.70857 -8.25036 -6.36807 1.00594 1.17273 1.34732 1.37222 1.47032 1.54270 2.35150 2.44452 3.05134 3.16957 3.69070 3.84589 3.86426 3.97241 4.00276 4.24680 4.30760 4.36539 4.46979 4.49843 4.65190 4.74661 4.77266 4.78157 4.85117 4.89756 4.92229 4.97326 5.07692 5.13598 5.16858 5.25602 5.28846 5.36898 5.40652 5.48656 5.51487 5.72706 5.94795 6.02561 6.37081 6.65678 6.68485 6.93812 7.32662 8.82728 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028882 B = 0.004430 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.225963 B = 6319.487773 C = 6649.111073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.105 3.895 3 N -0.578 5.578 4 C 0.260 3.740 5 C -0.542 4.542 6 H 0.047 0.953 7 C 0.015 3.985 8 N -0.922 5.922 9 Si 0.959 3.041 10 H -0.275 1.275 11 H -0.280 1.280 12 H -0.266 1.266 13 C 0.501 3.499 14 O -0.566 6.566 15 C 0.523 3.477 16 O -0.546 6.546 17 N -0.588 5.588 18 C 0.098 3.902 19 C -0.133 4.133 20 C -0.106 4.106 21 C -0.107 4.107 22 H 0.051 0.949 23 C -0.137 4.137 24 C 0.111 3.889 25 H 0.047 0.953 26 H 0.039 0.961 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.102 0.898 30 H 0.009 0.991 31 H 0.042 0.958 32 H 0.268 0.732 33 H 0.112 0.888 34 H 0.056 0.944 35 H 0.044 0.956 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.053 0.947 42 H 0.075 0.925 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.867 -13.511 16.632 22.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.017 4.017 3 N -0.309 5.309 4 C 0.140 3.860 5 C -0.580 4.580 6 H 0.065 0.935 7 C -0.184 4.184 8 N -0.562 5.562 9 Si 0.784 3.216 10 H -0.199 1.199 11 H -0.206 1.206 12 H -0.191 1.191 13 C 0.284 3.716 14 O -0.445 6.445 15 C 0.305 3.695 16 O -0.424 6.424 17 N -0.321 5.321 18 C -0.023 4.023 19 C -0.171 4.171 20 C -0.144 4.144 21 C -0.126 4.126 22 H 0.069 0.931 23 C -0.195 4.195 24 C -0.010 4.010 25 H 0.067 0.933 26 H 0.058 0.942 27 H 0.113 0.887 28 H 0.104 0.896 29 H 0.121 0.879 30 H 0.027 0.973 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.130 0.870 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.118 0.882 37 H 0.099 0.901 38 H 0.107 0.893 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.072 0.928 42 H 0.094 0.906 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 6.529 -12.907 16.683 22.080 hybrid contribution -0.920 1.253 -0.807 1.751 sum 5.609 -11.654 15.876 20.477 Atomic orbital electron populations 1.22178 0.95612 1.03108 1.01523 1.21773 0.95277 0.80684 1.03935 1.48375 1.61509 1.14877 1.06176 1.18993 0.95276 0.92559 0.79196 1.21672 0.96806 1.33187 1.06342 0.93454 1.25699 0.99202 0.96617 0.96908 1.70014 1.26531 1.43041 1.16587 0.85489 0.79322 0.78297 0.78465 1.19943 1.20623 1.19067 1.20510 0.78289 0.87120 0.85727 1.90744 1.49465 1.17083 1.87163 1.20206 0.85542 0.78165 0.85547 1.90708 1.23500 1.59083 1.69089 1.48235 1.08468 1.56014 1.19397 1.22162 0.80396 1.03443 0.96337 1.22000 0.99753 0.99256 0.96142 1.21587 0.95506 1.01921 0.95353 1.21521 0.95666 0.99726 0.95730 0.93054 1.21713 1.02261 1.01200 0.94341 1.22023 1.00767 0.98445 0.79722 0.93349 0.94208 0.88695 0.89649 0.87924 0.97330 0.93978 0.92280 0.87020 0.92510 0.93712 0.88194 0.90082 0.89298 0.90722 0.91328 0.92751 0.90641 0.87931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.68 10.21 71.98 0.74 -4.95 16 2 C 0.11 3.51 5.99 86.38 0.52 4.03 16 3 N -0.58 -25.40 2.46 -827.73 -2.04 -27.44 16 4 C 0.26 13.73 5.16 85.64 0.44 14.17 16 5 C -0.54 -31.48 9.15 25.60 0.23 -31.25 16 6 H 0.05 2.83 7.41 -2.91 -0.02 2.81 16 7 C 0.02 0.88 5.46 84.66 0.46 1.34 16 8 N -0.92 -54.64 13.29 21.45 0.28 -54.35 16 9 Si 0.96 45.67 29.54 68.60 2.03 47.70 16 10 H -0.27 -13.08 7.11 99.48 0.71 -12.37 16 11 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 12 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 13 C 0.50 23.02 5.42 87.27 0.47 23.49 16 14 O -0.57 -31.13 16.73 -3.27 -0.05 -31.19 16 15 C 0.52 19.97 5.68 87.27 0.50 20.47 16 16 O -0.55 -23.16 15.42 -3.24 -0.05 -23.21 16 17 N -0.59 -16.26 2.97 -819.64 -2.43 -18.70 16 18 C 0.10 2.27 6.38 86.51 0.55 2.82 16 19 C -0.13 -2.49 6.10 30.82 0.19 -2.31 16 20 C -0.11 -1.42 5.16 30.62 0.16 -1.26 16 21 C -0.11 -1.78 2.87 -10.72 -0.03 -1.82 16 22 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 23 C -0.14 -1.56 9.20 71.98 0.66 -0.90 16 24 C 0.11 2.29 5.70 86.36 0.49 2.79 16 25 H 0.05 1.90 7.49 -2.39 -0.02 1.88 16 26 H 0.04 1.52 7.00 -2.39 -0.02 1.51 16 27 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 28 H 0.09 2.37 6.95 -2.39 -0.02 2.35 16 29 H 0.10 3.04 7.84 -2.39 -0.02 3.02 16 30 H 0.01 0.51 7.50 -2.39 -0.02 0.50 16 31 H 0.04 2.17 7.86 -2.39 -0.02 2.15 16 32 H 0.27 14.87 8.31 -92.70 -0.77 14.10 16 33 H 0.11 1.80 8.14 -2.38 -0.02 1.78 16 34 H 0.06 1.70 6.31 -2.39 -0.02 1.69 16 35 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 41 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.08 1.86 7.04 -2.39 -0.02 1.85 16 43 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -75.89 347.48 4.09 -71.80 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: 0.98 Total: 8.76 kcal Atomic # 6 Polarization: 21.25 SS G_CDS: 5.38 Total: 26.63 kcal Atomic # 7 Polarization: -96.31 SS G_CDS: -4.19 Total: -100.49 kcal Atomic # 8 Polarization: -54.29 SS G_CDS: -0.10 Total: -54.40 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -75.89 4.09 -71.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330433167.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.275 kcal (2) G-P(sol) polarization free energy of solvation -75.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds