Wall clock time and date at job start Tue Mar 31 2020 05:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46731 * 2 1 4 4 C 1.50697 * 109.46977 * 240.00313 * 2 1 3 5 5 H 1.07999 * 119.99662 * 245.37276 * 4 2 1 6 6 C 1.37875 * 120.00120 * 65.37261 * 4 2 1 7 7 N 1.31515 * 119.99748 * 184.89036 * 6 4 2 8 8 Si 1.86794 * 120.00196 * 5.16703 * 6 4 2 9 9 H 1.48500 * 109.47373 * 269.72603 * 8 6 4 10 10 H 1.48505 * 109.47126 * 29.72474 * 8 6 4 11 11 H 1.48499 * 109.47207 * 149.72425 * 8 6 4 12 12 N 1.46495 * 109.47130 * 120.00222 * 2 1 3 13 13 C 1.34777 * 120.00120 * 274.99902 * 12 2 1 14 14 O 1.21291 * 119.99910 * 0.02562 * 13 12 2 15 15 C 1.50702 * 120.00409 * 180.02562 * 13 12 2 16 16 C 1.53002 * 109.47235 * 180.02562 * 15 13 12 17 17 C 1.50699 * 109.46899 * 180.02562 * 16 15 13 18 18 O 1.21277 * 120.00055 * 359.97438 * 17 16 15 19 19 N 1.34777 * 120.00073 * 179.97438 * 17 16 15 20 20 C 1.46495 * 120.00120 * 179.97438 * 19 17 16 21 21 C 1.54268 * 110.03237 * 272.90710 * 20 19 17 22 22 C 1.54967 * 104.15807 * 217.13846 * 21 20 19 23 23 C 1.54883 * 102.77868 * 37.88798 * 22 21 20 24 24 C 1.53875 * 110.03082 * 155.69059 * 20 19 17 25 25 H 1.09000 * 109.47026 * 294.97471 * 1 2 3 26 26 H 1.09000 * 109.47127 * 54.97478 * 1 2 3 27 27 H 1.08997 * 109.46920 * 174.97504 * 1 2 3 28 28 H 0.97000 * 120.00553 * 355.27176 * 7 6 4 29 29 H 0.96997 * 120.00507 * 94.99817 * 12 2 1 30 30 H 1.09002 * 109.46677 * 300.00341 * 15 13 12 31 31 H 1.09003 * 109.46788 * 60.00127 * 15 13 12 32 32 H 1.09002 * 109.46974 * 299.99665 * 16 15 13 33 33 H 1.08997 * 109.46784 * 60.00191 * 16 15 13 34 34 H 0.97003 * 119.99801 * 359.97438 * 19 17 16 35 35 H 1.08999 * 110.01654 * 34.30238 * 20 19 17 36 36 H 1.08998 * 110.48797 * 335.78631 * 21 20 19 37 37 H 1.09000 * 110.48239 * 98.42856 * 21 20 19 38 38 H 1.09008 * 110.71780 * 279.57262 * 22 21 20 39 39 H 1.09005 * 110.92126 * 156.30116 * 22 21 20 40 40 H 1.08998 * 110.48275 * 203.40446 * 23 22 21 41 41 H 1.09001 * 110.59607 * 80.82088 * 23 22 21 42 42 H 1.09002 * 110.02984 * 238.56654 * 24 20 19 43 43 H 1.08995 * 110.03722 * 0.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5798 -1.6363 -1.1338 6 6 1.7930 -0.1782 -2.4797 7 7 2.1461 -0.8447 -3.5570 8 14 0.9742 1.4929 -2.6418 9 1 -0.4987 1.3176 -2.7140 10 1 1.3161 2.3282 -1.4625 11 1 1.4542 2.1615 -3.8779 12 7 2.0183 -0.6906 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8582 1.1584 2.4117 15 6 2.6500 -0.7286 3.5874 16 6 2.7007 0.2543 4.7589 17 6 3.2042 -0.4558 5.9890 18 8 3.4934 -1.6323 5.9343 19 7 3.3330 0.2165 7.1500 20 6 3.8219 -0.4740 8.3459 21 6 2.6451 -1.1355 9.0924 22 6 2.9968 -0.9543 10.5907 23 6 3.6300 0.4587 10.6256 24 6 4.4483 0.5389 9.3203 25 1 -0.3633 0.4339 0.9316 26 1 -0.3633 0.5898 -0.8416 27 1 -0.3633 -1.0237 -0.0900 28 1 2.6359 -1.6778 -3.4732 29 1 2.2490 -1.6318 1.1526 30 1 1.9778 -1.5509 3.8324 31 1 3.6493 -1.1203 3.3978 32 1 3.3727 1.0769 4.5141 33 1 1.7012 0.6457 4.9483 34 1 3.1020 1.1576 7.1936 35 1 4.5581 -1.2278 8.0668 36 1 1.7099 -0.6279 8.8562 37 1 2.5800 -2.1939 8.8402 38 1 3.7160 -1.7080 10.9119 39 1 2.0994 -0.9910 11.2084 40 1 4.2829 0.5628 11.4922 41 1 2.8556 1.2257 10.6382 42 1 5.4881 0.2761 9.5147 43 1 4.3881 1.5443 8.9036 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330463925.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:21 Heat of formation + Delta-G solvation = -105.040191 kcal Electronic energy + Delta-G solvation = -21744.418894 eV Core-core repulsion = 18402.196800 eV Total energy + Delta-G solvation = -3342.222094 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.23007 -39.02980 -37.93510 -35.04418 -33.87061 -32.71148 -32.32355 -29.76983 -29.13165 -28.08348 -25.23649 -24.63729 -21.32571 -21.02948 -20.59566 -20.21026 -19.49976 -17.91629 -17.28069 -16.63174 -16.01581 -15.89137 -15.51063 -15.16481 -14.81324 -14.30977 -13.81680 -13.77713 -13.62001 -13.01823 -12.84498 -12.62839 -12.33972 -12.12849 -11.96301 -11.78987 -11.65340 -11.57494 -11.45744 -11.42984 -11.14677 -11.05093 -11.03553 -10.53753 -10.07580 -9.90978 -9.77058 -9.26421 -9.19680 -8.84530 -8.55182 -8.15281 -6.54250 -4.22352 2.54588 2.96232 3.26268 3.36417 3.45677 3.59670 4.02758 4.14597 4.23332 4.42160 4.48606 4.68671 4.98502 5.01961 5.08880 5.13467 5.15697 5.17356 5.22715 5.25484 5.39175 5.46900 5.50216 5.64874 5.73936 5.79469 5.84014 5.92152 5.92761 6.01861 6.33734 6.37134 6.45890 6.62912 6.90275 7.28156 7.30566 7.38852 7.66012 8.09685 8.23962 8.48835 8.71169 8.99028 9.48545 10.86281 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.047700 B = 0.002595 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.860425 B =10786.626539 C =10968.060411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.234 3.766 3 H 0.048 0.952 4 C -0.608 4.608 5 H 0.062 0.938 6 C 0.034 3.966 7 N -0.906 5.906 8 Si 1.052 2.948 9 H -0.281 1.281 10 H -0.274 1.274 11 H -0.288 1.288 12 N -0.702 5.702 13 C 0.501 3.499 14 O -0.563 6.563 15 C -0.126 4.126 16 C -0.123 4.123 17 C 0.514 3.486 18 O -0.541 6.541 19 N -0.730 5.730 20 C 0.139 3.861 21 C -0.135 4.135 22 C -0.125 4.125 23 C -0.124 4.124 24 C -0.132 4.132 25 H 0.033 0.967 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.268 0.732 29 H 0.394 0.606 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.401 0.599 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.169 2.304 27.400 27.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.130 3.870 3 H 0.066 0.934 4 C -0.647 4.647 5 H 0.080 0.920 6 C -0.172 4.172 7 N -0.540 5.540 8 Si 0.881 3.119 9 H -0.208 1.208 10 H -0.200 1.200 11 H -0.215 1.215 12 N -0.349 5.349 13 C 0.287 3.713 14 O -0.443 6.443 15 C -0.166 4.166 16 C -0.163 4.163 17 C 0.302 3.698 18 O -0.418 6.418 19 N -0.382 5.382 20 C 0.034 3.966 21 C -0.174 4.174 22 C -0.163 4.163 23 C -0.162 4.162 24 C -0.170 4.170 25 H 0.052 0.948 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.227 0.773 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.236 0.764 35 H 0.108 0.892 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.093 0.907 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.604 3.363 26.231 26.494 hybrid contribution 0.584 -1.245 1.056 1.733 sum 2.188 2.119 27.287 27.456 Atomic orbital electron populations 1.22393 0.99241 1.00827 0.99179 1.19204 0.90317 0.94750 0.82724 0.93427 1.22181 1.40633 1.10699 0.91147 0.91984 1.25722 0.96274 1.03544 0.91640 1.70828 1.36191 1.16790 1.30179 0.83898 0.76393 0.75552 0.76019 1.20840 1.20001 1.21458 1.46270 1.64847 1.13842 1.09953 1.20522 0.78375 0.87463 0.84954 1.90635 1.51995 1.16191 1.85478 1.21373 1.04109 0.98824 0.92324 1.21361 1.04155 0.99338 0.91450 1.20906 0.76936 0.87368 0.84610 1.90694 1.49610 1.16129 1.85352 1.46234 1.68252 1.14060 1.09657 1.21631 0.95992 0.94672 0.84318 1.22814 0.98443 1.01486 0.94674 1.22494 1.00684 0.96912 0.96184 1.22356 0.99236 0.97467 0.97145 1.22446 0.99975 0.99278 0.95317 0.94829 0.93200 0.93131 0.92166 0.77283 0.88714 0.88626 0.88091 0.88144 0.76448 0.89180 0.91114 0.91042 0.91291 0.91348 0.91430 0.91438 0.90735 0.90965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.57 9.07 37.16 0.34 -3.23 16 2 C 0.23 5.69 2.14 -69.09 -0.15 5.54 16 3 H 0.05 1.27 6.08 -51.93 -0.32 0.95 16 4 C -0.61 -16.71 9.10 -34.44 -0.31 -17.02 16 5 H 0.06 1.78 7.95 -52.49 -0.42 1.36 16 6 C 0.03 0.96 5.43 -17.82 -0.10 0.87 16 7 N -0.91 -27.43 13.70 55.43 0.76 -26.67 16 8 Si 1.05 25.65 25.28 -169.99 -4.30 21.36 16 9 H -0.28 -6.49 6.82 56.52 0.39 -6.11 16 10 H -0.27 -6.47 6.35 56.52 0.36 -6.11 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 12 N -0.70 -14.37 5.07 -54.93 -0.28 -14.65 16 13 C 0.50 9.44 7.79 -10.98 -0.09 9.36 16 14 O -0.56 -12.26 15.65 5.55 0.09 -12.17 16 15 C -0.13 -1.80 4.99 -27.88 -0.14 -1.94 16 16 C -0.12 -1.49 4.99 -27.88 -0.14 -1.62 16 17 C 0.51 6.17 7.82 -10.99 -0.09 6.08 16 18 O -0.54 -8.36 15.65 5.56 0.09 -8.27 16 19 N -0.73 -6.43 5.04 -52.72 -0.27 -6.70 16 20 C 0.14 1.15 3.23 -66.81 -0.22 0.94 16 21 C -0.14 -1.08 6.54 -25.03 -0.16 -1.24 16 22 C -0.12 -0.75 6.91 -24.70 -0.17 -0.92 16 23 C -0.12 -0.65 6.83 -25.08 -0.17 -0.83 16 24 C -0.13 -0.78 6.57 -25.61 -0.17 -0.95 16 25 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.05 1.13 4.41 -51.93 -0.23 0.90 16 27 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 28 H 0.27 8.04 8.72 -40.82 -0.36 7.68 16 29 H 0.39 7.27 8.53 -40.82 -0.35 6.92 16 30 H 0.09 1.28 8.10 -51.93 -0.42 0.86 16 31 H 0.10 1.33 8.10 -51.93 -0.42 0.91 16 32 H 0.10 1.18 8.10 -51.93 -0.42 0.76 16 33 H 0.10 1.16 8.10 -51.93 -0.42 0.73 16 34 H 0.40 2.56 8.31 -40.82 -0.34 2.23 16 35 H 0.09 0.92 7.59 -51.93 -0.39 0.52 16 36 H 0.07 0.58 8.05 -51.93 -0.42 0.16 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.40 8.14 -51.92 -0.42 -0.03 16 39 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 41 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.38 7.61 -51.93 -0.40 -0.02 16 LS Contribution 346.83 15.07 5.23 5.23 Total: -1.00 -33.39 346.83 -7.37 -40.76 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -7.13 Total: 6.10 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -1.56 Total: -4.97 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: 0.21 Total: -48.02 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: 0.17 Total: -20.44 kcal Atomic # 14 Polarization: 25.65 SS G_CDS: -4.30 Total: 21.36 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.39 -7.37 -40.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330463925.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.282 kcal (2) G-P(sol) polarization free energy of solvation -33.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds