Wall clock time and date at job start Tue Mar 31 2020 05:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46630 * 2 1 4 4 N 1.46492 * 109.47126 * 239.99804 * 2 1 3 5 5 C 1.34778 * 119.99984 * 85.00284 * 4 2 1 6 6 O 1.21278 * 120.00228 * 359.97438 * 5 4 2 7 7 C 1.50701 * 119.99819 * 180.02562 * 5 4 2 8 8 C 1.53004 * 109.46928 * 179.97438 * 7 5 4 9 9 C 1.53003 * 109.46965 * 294.99641 * 8 7 5 10 10 C 1.53004 * 109.46965 * 180.02562 * 9 8 7 11 11 C 1.53003 * 109.46858 * 60.00077 * 10 9 8 12 12 C 1.52990 * 109.47143 * 299.99870 * 11 10 9 13 13 C 1.52997 * 109.47116 * 174.99816 * 8 7 5 14 14 C 1.50703 * 109.47063 * 119.99447 * 2 1 3 15 15 O 1.21293 * 119.99482 * 120.00027 * 14 2 1 16 16 N 1.34777 * 120.00290 * 300.00464 * 14 2 1 17 17 C 1.37092 * 119.99729 * 180.27555 * 16 14 2 18 18 H 1.08002 * 120.00496 * 359.72414 * 17 16 14 19 19 C 1.38958 * 120.00096 * 179.72242 * 17 16 14 20 20 N 1.31406 * 120.00295 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99484 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47210 * 90.00351 * 21 19 17 23 23 H 1.48506 * 109.47251 * 210.00025 * 21 19 17 24 24 H 1.48504 * 109.47424 * 330.00119 * 21 19 17 25 25 H 1.09001 * 109.46852 * 300.00183 * 1 2 3 26 26 H 1.08993 * 109.46731 * 60.00419 * 1 2 3 27 27 H 1.09003 * 109.46582 * 180.02562 * 1 2 3 28 28 H 0.97006 * 120.00200 * 264.99683 * 4 2 1 29 29 H 1.08995 * 109.47173 * 299.99386 * 7 5 4 30 30 H 1.09000 * 109.47394 * 59.99698 * 7 5 4 31 31 H 1.09001 * 109.47240 * 54.99778 * 8 7 5 32 32 H 1.09001 * 109.47253 * 300.00129 * 9 8 7 33 33 H 1.09001 * 109.47282 * 60.00171 * 9 8 7 34 34 H 1.08992 * 109.47181 * 299.99912 * 10 9 8 35 35 H 1.09003 * 109.46749 * 179.97438 * 10 9 8 36 36 H 1.08999 * 109.46516 * 179.97438 * 11 10 9 37 37 H 1.09001 * 109.47146 * 60.00002 * 11 10 9 38 38 H 1.09001 * 109.47207 * 300.00095 * 12 11 10 39 39 H 1.09001 * 109.47156 * 180.02562 * 12 11 10 40 40 H 1.08997 * 109.47186 * 299.99989 * 13 8 7 41 41 H 1.09001 * 109.47098 * 59.99874 * 13 8 7 42 42 H 0.97001 * 119.99727 * 359.97438 * 16 14 2 43 43 H 0.97004 * 119.99848 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1472 -0.0183 -2.3571 6 8 1.8583 1.1583 -2.4117 7 6 2.6489 -0.7289 -3.5876 8 6 2.7000 0.2541 -4.7590 9 6 1.2808 0.7093 -5.1049 10 6 1.3318 1.6918 -6.2767 11 6 1.9573 1.0041 -7.4920 12 6 3.3764 0.5489 -7.1460 13 6 3.3257 -0.4330 -5.9744 14 6 2.0324 -0.7103 1.2306 15 8 2.7297 -1.6965 1.1193 16 7 1.7068 -0.2498 2.4546 17 6 2.1684 -0.8928 3.5740 18 1 2.7894 -1.7708 3.4750 19 6 1.8375 -0.4147 4.8361 20 7 2.2804 -1.0306 5.9090 21 14 0.7641 1.1045 5.0073 22 1 -0.6634 0.6987 5.0593 23 1 1.1199 1.8238 6.2569 24 1 0.9824 1.9989 3.8421 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5137 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 2.2491 -1.6318 -1.1525 29 1 3.6480 -1.1214 -3.3985 30 1 1.9760 -1.5507 -3.8325 31 1 3.3016 1.1195 -4.4811 32 1 0.6792 -0.1561 -5.3828 33 1 0.8350 1.1988 -4.2390 34 1 1.9335 2.5573 -5.9993 35 1 0.3207 2.0158 -6.5235 36 1 1.9932 1.7040 -8.3269 37 1 1.3556 0.1386 -7.7694 38 1 3.9781 1.4144 -6.8686 39 1 3.8222 0.0594 -8.0119 40 1 4.3367 -0.7573 -5.7280 41 1 2.7241 -1.2984 -6.2523 42 1 1.1493 0.5390 2.5436 43 1 2.0496 -0.6966 6.7900 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330475124.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:43 Heat of formation + Delta-G solvation = -107.652337 kcal Electronic energy + Delta-G solvation = -22357.065022 eV Core-core repulsion = 19014.729657 eV Total energy + Delta-G solvation = -3342.335365 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.12535 -38.82360 -37.88490 -34.73108 -33.98974 -32.84534 -31.88923 -30.83098 -30.37331 -27.12425 -25.40547 -23.43087 -22.72416 -21.66887 -20.04563 -19.82764 -19.42710 -18.63794 -17.05497 -16.01422 -15.61032 -15.44594 -15.08062 -14.87178 -14.42855 -14.28087 -14.18371 -13.99182 -13.39830 -13.18784 -12.85110 -12.63588 -12.39016 -12.31624 -12.21159 -11.97118 -11.94866 -11.66262 -11.31456 -11.23561 -11.17422 -11.06134 -10.64137 -10.56555 -10.38776 -10.15570 -10.05653 -9.68912 -9.49013 -8.98011 -8.56528 -8.29609 -6.40630 -3.92809 2.80977 2.99028 3.02989 3.11361 3.32412 3.58074 4.03216 4.49230 4.52526 4.59208 4.60685 4.91263 4.98667 5.10719 5.12677 5.23241 5.36550 5.37019 5.40052 5.45199 5.49650 5.52417 5.55972 5.63158 5.64832 5.77589 5.88434 5.90084 5.98994 6.03411 6.07016 6.09366 6.15896 6.34796 6.38533 6.41869 6.68371 7.44859 7.78071 8.01496 8.40814 8.48910 8.82454 9.30670 9.65297 10.71709 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.040734 B = 0.003098 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.213464 B = 9036.276543 C = 9456.846177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.129 3.871 3 H 0.100 0.900 4 N -0.705 5.705 5 C 0.513 3.487 6 O -0.546 6.546 7 C -0.137 4.137 8 C -0.070 4.070 9 C -0.120 4.120 10 C -0.117 4.117 11 C -0.120 4.120 12 C -0.118 4.118 13 C -0.116 4.116 14 C 0.442 3.558 15 O -0.578 6.578 16 N -0.576 5.576 17 C -0.309 4.309 18 H 0.121 0.879 19 C 0.045 3.955 20 N -0.875 5.875 21 Si 0.877 3.123 22 H -0.268 1.268 23 H -0.274 1.274 24 H -0.267 1.267 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.409 0.591 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.053 0.947 33 H 0.084 0.916 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.373 0.627 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.870 3.736 -22.631 23.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.020 3.980 3 H 0.118 0.882 4 N -0.358 5.358 5 C 0.300 3.700 6 O -0.424 6.424 7 C -0.177 4.177 8 C -0.088 4.088 9 C -0.158 4.158 10 C -0.155 4.155 11 C -0.157 4.157 12 C -0.156 4.156 13 C -0.153 4.153 14 C 0.228 3.772 15 O -0.461 6.461 16 N -0.214 5.214 17 C -0.438 4.438 18 H 0.139 0.861 19 C -0.159 4.159 20 N -0.514 5.514 21 Si 0.703 3.297 22 H -0.194 1.194 23 H -0.199 1.199 24 H -0.192 1.192 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.246 0.754 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.102 0.898 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.207 0.793 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.593 3.886 -22.461 22.942 hybrid contribution -0.675 0.675 0.517 1.086 sum -3.268 4.562 -21.945 22.651 Atomic orbital electron populations 1.22113 0.94063 1.02761 1.02574 1.20667 0.94746 0.97672 0.84931 0.88217 1.45797 1.66507 1.14911 1.08552 1.20660 0.77467 0.87367 0.84508 1.90637 1.50675 1.16073 1.85050 1.21748 1.03217 0.99708 0.93075 1.20899 0.97672 0.97647 0.92624 1.21716 0.96169 0.98913 0.98955 1.21503 1.00366 0.98572 0.95050 1.21553 0.96335 1.00127 0.97734 1.21498 0.96987 0.99262 0.97841 1.21597 1.00657 0.98241 0.94812 1.19689 0.85934 0.87570 0.84018 1.90541 1.41643 1.28075 1.85889 1.42150 1.46317 1.27249 1.05687 1.19443 1.30355 1.12010 0.81967 0.86118 1.25056 0.97673 0.98095 0.95072 1.69615 1.43918 1.39839 0.98037 0.86705 0.81296 0.82870 0.78856 1.19361 1.19943 1.19244 0.91457 0.91688 0.91871 0.75412 0.88806 0.89000 0.90388 0.92824 0.89798 0.92036 0.92394 0.92466 0.92228 0.92022 0.92257 0.91963 0.91976 0.79348 0.91409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 9.38 37.16 0.35 -1.99 16 2 C 0.13 2.25 2.98 -69.08 -0.21 2.04 16 3 H 0.10 1.76 7.58 -51.93 -0.39 1.37 16 4 N -0.71 -10.91 4.95 -54.93 -0.27 -11.19 16 5 C 0.51 7.35 7.51 -10.98 -0.08 7.27 16 6 O -0.55 -9.22 13.63 5.56 0.08 -9.14 16 7 C -0.14 -1.44 5.17 -27.88 -0.14 -1.58 16 8 C -0.07 -0.71 1.84 -90.62 -0.17 -0.88 16 9 C -0.12 -1.27 4.94 -26.73 -0.13 -1.40 16 10 C -0.12 -1.09 5.92 -26.73 -0.16 -1.25 16 11 C -0.12 -0.95 5.92 -26.73 -0.16 -1.11 16 12 C -0.12 -0.92 5.92 -26.76 -0.16 -1.08 16 13 C -0.12 -0.95 5.20 -26.76 -0.14 -1.09 16 14 C 0.44 9.81 7.17 -10.98 -0.08 9.73 16 15 O -0.58 -14.71 15.41 5.55 0.09 -14.62 16 16 N -0.58 -13.49 4.98 -10.96 -0.05 -13.54 16 17 C -0.31 -8.55 10.16 -14.93 -0.15 -8.70 16 18 H 0.12 3.80 7.39 -52.49 -0.39 3.41 16 19 C 0.05 1.21 5.50 -17.47 -0.10 1.12 16 20 N -0.88 -25.05 13.96 55.50 0.77 -24.27 16 21 Si 0.88 19.05 27.74 -169.99 -4.71 14.33 16 22 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 23 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 24 H -0.27 -5.35 6.52 56.52 0.37 -4.98 16 25 H 0.07 0.96 7.56 -51.93 -0.39 0.56 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.41 6.14 7.79 -40.82 -0.32 5.82 16 29 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 0.93 7.96 -51.93 -0.41 0.51 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 1.09 5.95 -51.93 -0.31 0.78 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.37 7.77 5.18 -40.82 -0.21 7.56 16 43 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 342.60 15.07 5.16 5.16 Total: -1.00 -31.31 342.60 -7.36 -38.67 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: -7.09 Total: 13.52 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -1.32 Total: 1.08 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: 0.45 Total: -49.00 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: 0.16 Total: -23.76 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -4.71 Total: 14.33 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.31 -7.36 -38.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330475124.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.987 kcal (2) G-P(sol) polarization free energy of solvation -31.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds