Wall clock time and date at job start Tue Mar 31 2020 05:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46630 * 2 1 4 4 N 1.46492 * 109.47126 * 239.99804 * 2 1 3 5 5 C 1.34778 * 119.99984 * 85.00284 * 4 2 1 6 6 O 1.21278 * 120.00228 * 359.97438 * 5 4 2 7 7 C 1.50701 * 119.99819 * 180.02562 * 5 4 2 8 8 C 1.53004 * 109.46928 * 179.97438 * 7 5 4 9 9 C 1.53003 * 109.46965 * 294.99641 * 8 7 5 10 10 C 1.53004 * 109.46965 * 180.02562 * 9 8 7 11 11 C 1.53003 * 109.46858 * 60.00077 * 10 9 8 12 12 C 1.52990 * 109.47143 * 299.99870 * 11 10 9 13 13 C 1.52997 * 109.47116 * 174.99816 * 8 7 5 14 14 C 1.50703 * 109.47063 * 119.99447 * 2 1 3 15 15 O 1.21293 * 119.99482 * 120.00027 * 14 2 1 16 16 N 1.34777 * 120.00290 * 300.00464 * 14 2 1 17 17 C 1.37092 * 119.99729 * 180.27555 * 16 14 2 18 18 H 1.08002 * 120.00496 * 359.72414 * 17 16 14 19 19 C 1.38958 * 120.00096 * 179.72242 * 17 16 14 20 20 N 1.31406 * 120.00295 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99484 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47210 * 90.00351 * 21 19 17 23 23 H 1.48506 * 109.47251 * 210.00025 * 21 19 17 24 24 H 1.48504 * 109.47424 * 330.00119 * 21 19 17 25 25 H 1.09001 * 109.46852 * 300.00183 * 1 2 3 26 26 H 1.08993 * 109.46731 * 60.00419 * 1 2 3 27 27 H 1.09003 * 109.46582 * 180.02562 * 1 2 3 28 28 H 0.97006 * 120.00200 * 264.99683 * 4 2 1 29 29 H 1.08995 * 109.47173 * 299.99386 * 7 5 4 30 30 H 1.09000 * 109.47394 * 59.99698 * 7 5 4 31 31 H 1.09001 * 109.47240 * 54.99778 * 8 7 5 32 32 H 1.09001 * 109.47253 * 300.00129 * 9 8 7 33 33 H 1.09001 * 109.47282 * 60.00171 * 9 8 7 34 34 H 1.08992 * 109.47181 * 299.99912 * 10 9 8 35 35 H 1.09003 * 109.46749 * 179.97438 * 10 9 8 36 36 H 1.08999 * 109.46516 * 179.97438 * 11 10 9 37 37 H 1.09001 * 109.47146 * 60.00002 * 11 10 9 38 38 H 1.09001 * 109.47207 * 300.00095 * 12 11 10 39 39 H 1.09001 * 109.47156 * 180.02562 * 12 11 10 40 40 H 1.08997 * 109.47186 * 299.99989 * 13 8 7 41 41 H 1.09001 * 109.47098 * 59.99874 * 13 8 7 42 42 H 0.97001 * 119.99727 * 359.97438 * 16 14 2 43 43 H 0.97004 * 119.99848 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1472 -0.0183 -2.3571 6 8 1.8583 1.1583 -2.4117 7 6 2.6489 -0.7289 -3.5876 8 6 2.7000 0.2541 -4.7590 9 6 1.2808 0.7093 -5.1049 10 6 1.3318 1.6918 -6.2767 11 6 1.9573 1.0041 -7.4920 12 6 3.3764 0.5489 -7.1460 13 6 3.3257 -0.4330 -5.9744 14 6 2.0324 -0.7103 1.2306 15 8 2.7297 -1.6965 1.1193 16 7 1.7068 -0.2498 2.4546 17 6 2.1684 -0.8928 3.5740 18 1 2.7894 -1.7708 3.4750 19 6 1.8375 -0.4147 4.8361 20 7 2.2804 -1.0306 5.9090 21 14 0.7641 1.1045 5.0073 22 1 -0.6634 0.6987 5.0593 23 1 1.1199 1.8238 6.2569 24 1 0.9824 1.9989 3.8421 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5137 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 2.2491 -1.6318 -1.1525 29 1 3.6480 -1.1214 -3.3985 30 1 1.9760 -1.5507 -3.8325 31 1 3.3016 1.1195 -4.4811 32 1 0.6792 -0.1561 -5.3828 33 1 0.8350 1.1988 -4.2390 34 1 1.9335 2.5573 -5.9993 35 1 0.3207 2.0158 -6.5235 36 1 1.9932 1.7040 -8.3269 37 1 1.3556 0.1386 -7.7694 38 1 3.9781 1.4144 -6.8686 39 1 3.8222 0.0594 -8.0119 40 1 4.3367 -0.7573 -5.7280 41 1 2.7241 -1.2984 -6.2523 42 1 1.1493 0.5390 2.5436 43 1 2.0496 -0.6966 6.7900 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330475124.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:43 Heat of formation + Delta-G solvation = -128.836452 kcal Electronic energy + Delta-G solvation = -22357.983634 eV Core-core repulsion = 19014.729657 eV Total energy + Delta-G solvation = -3343.253977 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.36581 -40.29113 -38.93500 -36.33492 -35.74969 -33.94133 -33.62662 -31.67018 -31.52552 -28.00356 -27.27557 -24.88032 -23.44330 -22.60124 -21.27963 -21.16641 -20.58682 -20.40959 -18.42086 -17.43373 -17.17332 -16.56867 -16.39571 -16.06254 -15.83829 -15.50761 -14.97294 -14.93789 -14.87424 -14.58299 -14.27012 -14.22029 -13.80173 -13.31566 -13.24803 -13.00935 -12.97986 -12.78363 -12.61908 -12.45102 -12.42473 -12.01202 -11.92585 -11.79714 -11.58505 -11.28563 -11.23247 -10.87486 -10.65194 -10.49265 -10.32931 -10.07028 -8.46661 -6.08264 1.29150 1.31498 1.41565 1.66462 1.80006 2.09717 2.18882 2.84825 3.09239 3.71363 3.77349 3.88231 3.92672 4.06527 4.12960 4.19164 4.29230 4.38530 4.52234 4.61242 4.63566 4.67817 4.72385 4.79131 4.82161 4.87934 4.91826 5.09610 5.14367 5.24054 5.30683 5.32950 5.36838 5.39581 5.46306 5.49394 5.62185 5.66960 5.87614 6.47728 6.58424 6.77694 7.23435 7.31508 7.77899 8.69928 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.040734 B = 0.003098 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.213464 B = 9036.276543 C = 9456.846177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.139 3.861 3 H 0.102 0.898 4 N -0.708 5.708 5 C 0.512 3.488 6 O -0.572 6.572 7 C -0.132 4.132 8 C -0.067 4.067 9 C -0.118 4.118 10 C -0.118 4.118 11 C -0.117 4.117 12 C -0.119 4.119 13 C -0.111 4.111 14 C 0.447 3.553 15 O -0.614 6.614 16 N -0.577 5.577 17 C -0.331 4.331 18 H 0.063 0.937 19 C -0.007 4.007 20 N -0.925 5.925 21 Si 0.955 3.045 22 H -0.252 1.252 23 H -0.273 1.273 24 H -0.236 1.236 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.064 0.936 28 H 0.412 0.588 29 H 0.108 0.892 30 H 0.116 0.884 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.049 0.951 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.054 0.946 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.390 0.610 43 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.307 4.937 -24.717 25.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.029 3.971 3 H 0.120 0.880 4 N -0.361 5.361 5 C 0.301 3.699 6 O -0.451 6.451 7 C -0.171 4.171 8 C -0.086 4.086 9 C -0.156 4.156 10 C -0.155 4.155 11 C -0.154 4.154 12 C -0.157 4.157 13 C -0.149 4.149 14 C 0.234 3.766 15 O -0.499 6.499 16 N -0.217 5.217 17 C -0.460 4.460 18 H 0.081 0.919 19 C -0.207 4.207 20 N -0.565 5.565 21 Si 0.775 3.225 22 H -0.176 1.176 23 H -0.198 1.198 24 H -0.160 1.160 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.083 0.917 28 H 0.249 0.751 29 H 0.126 0.874 30 H 0.134 0.866 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.225 0.775 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.029 5.086 -24.582 25.424 hybrid contribution -0.145 0.220 1.118 1.149 sum -4.174 5.306 -23.465 24.416 Atomic orbital electron populations 1.22087 0.91638 1.03317 1.03818 1.20542 0.96476 0.96878 0.83162 0.88019 1.45882 1.66914 1.15014 1.08333 1.21341 0.76534 0.87125 0.84918 1.90633 1.51712 1.17361 1.85435 1.21818 1.04302 0.99974 0.91019 1.20871 0.97288 0.97021 0.93442 1.21663 0.96320 0.99299 0.98296 1.21498 1.00575 0.98065 0.95381 1.21537 0.96332 1.00440 0.97129 1.21518 0.96904 0.99053 0.98211 1.21572 1.01033 0.98432 0.93830 1.20631 0.84207 0.86731 0.85028 1.90523 1.42884 1.29824 1.86716 1.41962 1.46981 1.27787 1.04959 1.19030 1.31159 1.11541 0.84235 0.91898 1.26046 0.98891 1.01967 0.93834 1.69777 1.45629 1.42187 0.98935 0.85500 0.79221 0.77900 0.79878 1.17604 1.19751 1.15976 0.90307 0.90335 0.91692 0.75142 0.87393 0.86629 0.92593 0.91771 0.92541 0.93241 0.92042 0.91646 0.91486 0.92767 0.90819 0.91281 0.90797 0.77458 0.90910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.14 9.38 71.98 0.68 -3.46 16 2 C 0.14 4.66 2.98 44.25 0.13 4.79 16 3 H 0.10 3.44 7.58 -2.39 -0.02 3.43 16 4 N -0.71 -21.15 4.95 -446.09 -2.21 -23.36 16 5 C 0.51 14.01 7.51 87.66 0.66 14.67 16 6 O -0.57 -18.82 13.63 -3.02 -0.04 -18.86 16 7 C -0.13 -2.48 5.17 29.85 0.15 -2.33 16 8 C -0.07 -1.27 1.84 -10.79 -0.02 -1.29 16 9 C -0.12 -2.34 4.94 30.60 0.15 -2.18 16 10 C -0.12 -2.04 5.92 30.60 0.18 -1.86 16 11 C -0.12 -1.59 5.92 30.59 0.18 -1.41 16 12 C -0.12 -1.59 5.92 30.57 0.18 -1.41 16 13 C -0.11 -1.55 5.20 30.58 0.16 -1.39 16 14 C 0.45 19.85 7.17 87.66 0.63 20.48 16 15 O -0.61 -32.09 15.41 -3.07 -0.05 -32.14 16 16 N -0.58 -26.92 4.98 -306.98 -1.53 -28.45 16 17 C -0.33 -18.90 10.16 84.04 0.85 -18.05 16 18 H 0.06 4.24 7.39 -2.91 -0.02 4.22 16 19 C -0.01 -0.40 5.50 84.93 0.47 0.07 16 20 N -0.93 -54.52 13.96 21.66 0.30 -54.22 16 21 Si 0.96 38.23 27.74 68.60 1.90 40.14 16 22 H -0.25 -9.45 7.11 99.48 0.71 -8.74 16 23 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 24 H -0.24 -8.20 6.52 99.48 0.65 -7.55 16 25 H 0.08 1.99 7.56 -2.39 -0.02 1.97 16 26 H 0.08 1.99 8.14 -2.39 -0.02 1.98 16 27 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.41 12.02 7.79 -92.70 -0.72 11.29 16 29 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.12 1.67 8.14 -2.39 -0.02 1.66 16 31 H 0.06 1.30 7.96 -2.39 -0.02 1.28 16 32 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.06 1.44 5.95 -2.39 -0.01 1.42 16 34 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.39 15.43 5.18 -92.71 -0.48 14.95 16 43 H 0.28 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -71.25 342.60 2.53 -68.72 By element: Atomic # 1 Polarization: 41.79 SS G_CDS: -0.25 Total: 41.53 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: 4.40 Total: 6.63 kcal Atomic # 7 Polarization: -102.59 SS G_CDS: -3.44 Total: -106.02 kcal Atomic # 8 Polarization: -50.91 SS G_CDS: -0.09 Total: -51.00 kcal Atomic # 14 Polarization: 38.23 SS G_CDS: 1.90 Total: 40.14 kcal Total: -71.25 2.53 -68.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330475124.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.114 kcal (2) G-P(sol) polarization free energy of solvation -71.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds