Wall clock time and date at job start Tue Mar 31 2020 05:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46885 * 2 1 4 4 N 1.46496 * 109.46916 * 119.99737 * 2 1 3 5 5 C 1.34777 * 120.00271 * 274.99861 * 4 2 1 6 6 O 1.21278 * 119.99854 * 0.02562 * 5 4 2 7 7 C 1.50703 * 120.00161 * 180.02562 * 5 4 2 8 8 C 1.53000 * 109.46912 * 180.02562 * 7 5 4 9 9 C 1.53005 * 109.46867 * 294.99775 * 8 7 5 10 10 C 1.53008 * 109.46774 * 180.02562 * 9 8 7 11 11 C 1.53002 * 109.46995 * 60.00238 * 10 9 8 12 12 C 1.53000 * 109.47320 * 299.99845 * 11 10 9 13 13 C 1.53002 * 109.46776 * 175.00090 * 8 7 5 14 14 C 1.50699 * 109.47261 * 239.99767 * 2 1 3 15 15 O 1.21293 * 119.99999 * 239.99764 * 14 2 1 16 16 N 1.34779 * 119.99864 * 59.99876 * 14 2 1 17 17 C 1.37100 * 119.99934 * 179.97438 * 16 14 2 18 18 H 1.07996 * 119.99993 * 0.02562 * 17 16 14 19 19 C 1.38946 * 119.99892 * 180.02562 * 17 16 14 20 20 N 1.31416 * 119.99882 * 180.02562 * 19 17 16 21 21 Si 1.86806 * 120.00024 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.46868 * 90.00498 * 21 19 17 23 23 H 1.48500 * 109.46799 * 210.00247 * 21 19 17 24 24 H 1.48494 * 109.47116 * 330.00271 * 21 19 17 25 25 H 1.09005 * 109.46885 * 180.02562 * 1 2 3 26 26 H 1.08991 * 109.47341 * 299.99907 * 1 2 3 27 27 H 1.09000 * 109.46953 * 60.00208 * 1 2 3 28 28 H 0.97005 * 120.00266 * 95.00444 * 4 2 1 29 29 H 1.09002 * 109.47152 * 60.00245 * 7 5 4 30 30 H 1.09001 * 109.46980 * 300.00345 * 7 5 4 31 31 H 1.08990 * 109.47170 * 54.99987 * 8 7 5 32 32 H 1.09000 * 109.47443 * 300.00098 * 9 8 7 33 33 H 1.09001 * 109.47099 * 60.00379 * 9 8 7 34 34 H 1.09000 * 109.47044 * 300.00132 * 10 9 8 35 35 H 1.08998 * 109.46504 * 179.97438 * 10 9 8 36 36 H 1.08996 * 109.46657 * 179.97438 * 11 10 9 37 37 H 1.09000 * 109.46863 * 59.99768 * 11 10 9 38 38 H 1.09001 * 109.46578 * 300.00351 * 12 11 10 39 39 H 1.08993 * 109.47427 * 179.97438 * 12 11 10 40 40 H 1.08994 * 109.47359 * 299.99610 * 13 8 7 41 41 H 1.09000 * 109.47312 * 60.00037 * 13 8 7 42 42 H 0.96995 * 120.00234 * 0.02562 * 16 14 2 43 43 H 0.97000 * 119.99714 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8582 1.1584 2.4117 7 6 2.6499 -0.7284 3.5875 8 6 2.7006 0.2546 4.7589 9 6 3.7367 1.3421 4.4674 10 6 3.7879 2.3248 5.6391 11 6 4.1788 1.5768 6.9153 12 6 3.1428 0.4893 7.2067 13 6 3.0912 -0.4930 6.0354 14 6 2.0324 -0.7104 -1.2304 15 8 2.7298 -1.6966 -1.1191 16 7 1.7068 -0.2500 -2.4546 17 6 2.1642 -0.8960 -3.5739 18 1 2.7851 -1.7741 -3.4748 19 6 1.8290 -0.4211 -4.8359 20 7 2.2670 -1.0406 -5.9089 21 14 0.7544 1.0973 -5.0074 22 1 1.6124 2.3085 -5.0520 23 1 -0.0369 1.0047 -6.2606 24 1 -0.1666 1.1856 -3.8458 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 2.2491 -1.6317 1.1527 29 1 3.6492 -1.1202 3.3980 30 1 1.9777 -1.5508 3.8325 31 1 1.7206 0.7126 4.8915 32 1 4.7168 0.8840 4.3348 33 1 3.4584 1.8746 3.5580 34 1 2.8078 2.7829 5.7721 35 1 4.5263 3.0992 5.4316 36 1 4.2157 2.2770 7.7498 37 1 5.1588 1.1187 6.7821 38 1 2.1628 0.9475 7.3398 39 1 3.4215 -0.0439 8.1156 40 1 2.3532 -1.2677 6.2430 41 1 4.0714 -0.9511 5.9027 42 1 1.1494 0.5388 -2.5436 43 1 2.0327 -0.7092 -6.7899 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330475125.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:45 Heat of formation + Delta-G solvation = -107.674198 kcal Electronic energy + Delta-G solvation = -22364.054258 eV Core-core repulsion = 19021.717945 eV Total energy + Delta-G solvation = -3342.336313 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.12194 -38.81937 -37.88015 -34.73030 -33.99027 -32.83979 -31.88751 -30.81686 -30.36638 -27.12449 -25.40432 -23.41474 -22.71866 -21.66516 -20.04901 -19.81040 -19.42919 -18.63722 -17.05499 -15.97360 -15.60662 -15.39515 -15.23306 -14.86900 -14.35822 -14.24313 -14.17786 -13.91464 -13.55329 -13.15324 -12.87502 -12.55726 -12.38742 -12.28387 -12.12313 -12.06500 -11.92340 -11.69067 -11.32619 -11.22802 -11.16039 -11.05155 -10.64081 -10.55347 -10.36194 -10.14503 -10.05574 -9.68987 -9.49299 -8.98119 -8.56175 -8.29568 -6.40612 -3.92857 2.80999 2.98302 3.03326 3.11485 3.32628 3.58006 4.03196 4.50221 4.52267 4.59860 4.61590 4.91624 4.99752 5.11325 5.12935 5.24454 5.36091 5.38082 5.41465 5.46990 5.50210 5.52881 5.57903 5.62357 5.64828 5.78079 5.89393 5.90885 6.00545 6.04228 6.07630 6.09994 6.17614 6.35347 6.40903 6.43583 6.68752 7.44902 7.78070 8.01498 8.40817 8.48915 8.82446 9.30661 9.65249 10.71736 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.037075 B = 0.003108 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.041288 B = 9006.641371 C = 9197.024526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.129 3.871 3 H 0.100 0.900 4 N -0.705 5.705 5 C 0.513 3.487 6 O -0.546 6.546 7 C -0.138 4.138 8 C -0.069 4.069 9 C -0.122 4.122 10 C -0.117 4.117 11 C -0.120 4.120 12 C -0.118 4.118 13 C -0.116 4.116 14 C 0.442 3.558 15 O -0.577 6.577 16 N -0.576 5.576 17 C -0.309 4.309 18 H 0.121 0.879 19 C 0.045 3.955 20 N -0.875 5.875 21 Si 0.878 3.122 22 H -0.269 1.269 23 H -0.275 1.275 24 H -0.267 1.267 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.409 0.591 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.084 0.916 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.373 0.627 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.278 4.170 22.231 22.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.020 3.980 3 H 0.118 0.882 4 N -0.358 5.358 5 C 0.300 3.700 6 O -0.424 6.424 7 C -0.178 4.178 8 C -0.087 4.087 9 C -0.159 4.159 10 C -0.155 4.155 11 C -0.158 4.158 12 C -0.155 4.155 13 C -0.153 4.153 14 C 0.228 3.772 15 O -0.461 6.461 16 N -0.214 5.214 17 C -0.438 4.438 18 H 0.139 0.861 19 C -0.159 4.159 20 N -0.514 5.514 21 Si 0.704 3.296 22 H -0.194 1.194 23 H -0.200 1.200 24 H -0.193 1.193 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.246 0.754 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.102 0.898 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.207 0.793 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.999 4.321 22.061 22.502 hybrid contribution -0.713 0.652 -0.517 1.096 sum -1.712 4.972 21.544 22.177 Atomic orbital electron populations 1.22114 0.94061 1.02755 1.02594 1.20664 0.94743 0.97665 0.84929 0.88213 1.45799 1.66504 1.14916 1.08551 1.20661 0.77444 0.87366 0.84531 1.90637 1.50606 1.16005 1.85188 1.21752 1.03243 0.99605 0.93167 1.20890 1.00493 0.94985 0.92380 1.21727 0.98105 0.96714 0.99348 1.21500 1.01380 0.97857 0.94714 1.21558 0.98890 0.97648 0.97691 1.21498 0.99510 0.96869 0.97664 1.21602 1.01581 0.97708 0.94426 1.19689 0.85968 0.87532 0.84016 1.90541 1.41654 1.28055 1.85887 1.42149 1.46286 1.27288 1.05688 1.19441 1.30234 1.12122 0.81967 0.86120 1.25057 0.97675 0.98099 0.95071 1.69620 1.44104 1.39668 0.98034 0.86697 0.80878 0.83299 0.78772 1.19376 1.19962 1.19272 0.91906 0.91707 0.91411 0.75416 0.88834 0.88976 0.90455 0.92714 0.89775 0.92083 0.92349 0.92466 0.92182 0.92065 0.92272 0.92043 0.91918 0.79349 0.91412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 9.38 37.16 0.35 -2.02 16 2 C 0.13 2.25 2.98 -69.08 -0.21 2.04 16 3 H 0.10 1.75 7.58 -51.93 -0.39 1.36 16 4 N -0.71 -10.92 4.95 -54.93 -0.27 -11.19 16 5 C 0.51 7.35 7.51 -10.98 -0.08 7.26 16 6 O -0.55 -9.21 13.63 5.56 0.08 -9.13 16 7 C -0.14 -1.44 5.17 -27.88 -0.14 -1.58 16 8 C -0.07 -0.70 1.84 -90.62 -0.17 -0.87 16 9 C -0.12 -1.35 4.95 -26.72 -0.13 -1.48 16 10 C -0.12 -1.13 5.92 -26.73 -0.16 -1.29 16 11 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 12 C -0.12 -0.92 5.92 -26.75 -0.16 -1.08 16 13 C -0.12 -0.95 5.20 -26.75 -0.14 -1.08 16 14 C 0.44 9.81 7.17 -10.98 -0.08 9.73 16 15 O -0.58 -14.70 15.41 5.55 0.09 -14.61 16 16 N -0.58 -13.48 4.98 -10.96 -0.05 -13.54 16 17 C -0.31 -8.55 10.16 -14.93 -0.15 -8.70 16 18 H 0.12 3.80 7.39 -52.49 -0.39 3.41 16 19 C 0.05 1.21 5.50 -17.47 -0.10 1.11 16 20 N -0.88 -25.05 13.96 55.50 0.77 -24.27 16 21 Si 0.88 19.05 27.74 -169.99 -4.71 14.34 16 22 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 23 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 24 H -0.27 -5.28 6.52 56.52 0.37 -4.91 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.07 0.99 7.56 -51.93 -0.39 0.59 16 28 H 0.41 6.15 7.79 -40.82 -0.32 5.83 16 29 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.08 0.89 7.95 -51.93 -0.41 0.47 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 1.16 5.95 -51.93 -0.31 0.85 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.37 7.77 5.18 -40.82 -0.21 7.56 16 43 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 342.60 15.07 5.16 5.16 Total: -1.00 -31.27 342.60 -7.36 -38.62 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: -7.09 Total: 13.71 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -1.32 Total: 0.91 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: 0.45 Total: -49.00 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: 0.16 Total: -23.74 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -4.71 Total: 14.34 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.27 -7.36 -38.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330475125.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.053 kcal (2) G-P(sol) polarization free energy of solvation -31.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds