Wall clock time and date at job start Tue Mar 31 2020 05:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47077 * 2 1 4 4 N 1.46492 * 109.47213 * 120.00217 * 2 1 3 5 5 C 1.34771 * 120.00121 * 275.00112 * 4 2 1 6 6 O 1.21284 * 120.00285 * 359.97438 * 5 4 2 7 7 C 1.50701 * 120.00123 * 180.02562 * 5 4 2 8 8 C 1.53002 * 109.46852 * 299.99509 * 7 5 4 9 9 C 1.53004 * 109.46917 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.46915 * 60.00298 * 9 8 7 11 11 C 1.53002 * 109.47085 * 299.99599 * 10 9 8 12 12 C 1.52990 * 109.46915 * 60.00365 * 11 10 9 13 13 C 1.50703 * 109.46771 * 240.00448 * 2 1 3 14 14 O 1.21283 * 119.99488 * 239.99768 * 13 2 1 15 15 N 1.34777 * 120.00290 * 60.00208 * 13 2 1 16 16 C 1.46498 * 119.99828 * 180.27728 * 15 13 2 17 17 C 1.50700 * 109.46769 * 179.72341 * 16 15 13 18 18 H 1.07997 * 120.00357 * 359.97438 * 17 16 15 19 19 C 1.37886 * 119.99789 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99999 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 119.99952 * 359.97438 * 19 17 16 22 22 H 1.48506 * 109.47050 * 90.00071 * 21 19 17 23 23 H 1.48500 * 109.47345 * 209.99736 * 21 19 17 24 24 H 1.48498 * 109.47548 * 330.00215 * 21 19 17 25 25 H 1.08998 * 109.46818 * 300.00015 * 1 2 3 26 26 H 1.09008 * 109.47076 * 59.99403 * 1 2 3 27 27 H 1.08992 * 109.47503 * 179.97438 * 1 2 3 28 28 H 0.97006 * 119.99994 * 94.99867 * 4 2 1 29 29 H 1.08998 * 109.47701 * 59.99769 * 7 5 4 30 30 H 1.09001 * 109.47237 * 300.00044 * 8 7 5 31 31 H 1.08997 * 109.46976 * 60.00234 * 8 7 5 32 32 H 1.09001 * 109.47190 * 300.00056 * 9 8 7 33 33 H 1.09001 * 109.46750 * 180.02562 * 9 8 7 34 34 H 1.09001 * 109.46946 * 179.97438 * 10 9 8 35 35 H 1.09001 * 109.47389 * 59.99880 * 10 9 8 36 36 H 1.08993 * 109.46758 * 299.99970 * 11 10 9 37 37 H 1.09005 * 109.46719 * 180.02562 * 11 10 9 38 38 H 1.09005 * 109.47447 * 179.97438 * 12 11 10 39 39 H 1.09001 * 109.47161 * 59.99962 * 12 11 10 40 40 H 0.97001 * 119.99727 * 359.97438 * 15 13 2 41 41 H 1.09004 * 109.46963 * 299.72135 * 16 15 13 42 42 H 1.08994 * 109.47567 * 59.72287 * 16 15 13 43 43 H 0.97000 * 119.99789 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1471 -0.0184 2.3570 6 8 1.8590 1.1585 2.4115 7 6 2.6500 -0.7287 3.5873 8 6 1.7063 -1.8829 3.9313 9 6 2.2166 -2.6037 5.1807 10 6 2.2674 -1.6203 6.3517 11 6 3.2111 -0.4661 6.0078 12 6 2.7009 0.2547 4.7584 13 6 2.0323 -0.7103 -1.2306 14 8 2.7295 -1.6964 -1.1193 15 7 1.7067 -0.2498 -2.4546 16 6 2.1900 -0.9439 -3.6508 17 6 1.6831 -0.2366 -4.8812 18 1 1.0627 0.6418 -4.7821 19 6 2.0115 -0.7109 -6.1335 20 7 1.5688 -0.0940 -7.2073 21 14 3.0852 -2.2299 -6.3050 22 1 2.2267 -3.4411 -6.3439 23 1 3.8722 -2.1406 -7.5611 24 1 4.0101 -2.3158 -5.1464 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5140 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 2.2490 -1.6318 1.1525 29 1 3.6493 -1.1205 3.3978 30 1 0.7070 -1.4911 4.1209 31 1 1.6697 -2.5832 3.0969 32 1 3.2160 -2.9955 4.9916 33 1 1.5446 -3.4262 5.4255 34 1 2.6305 -2.1339 7.2420 35 1 1.2680 -1.2285 6.5409 36 1 4.2104 -0.8579 5.8187 37 1 3.2476 0.2343 6.8423 38 1 3.3728 1.0773 4.5136 39 1 1.7015 0.6464 4.9476 40 1 1.1488 0.5387 -2.5436 41 1 3.2800 -0.9444 -3.6551 42 1 1.8262 -1.9714 -3.6466 43 1 1.8001 -0.4275 -8.0883 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330524342.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:13 Heat of formation + Delta-G solvation = -109.623603 kcal Electronic energy + Delta-G solvation = -22264.723113 eV Core-core repulsion = 18922.302267 eV Total energy + Delta-G solvation = -3342.420846 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.50395 -39.18167 -37.69801 -34.98081 -34.41818 -32.54685 -31.86637 -31.00110 -30.12273 -27.85304 -24.85669 -23.56409 -22.81845 -21.86730 -20.53789 -19.97034 -19.82962 -18.03324 -16.83012 -16.52124 -15.82212 -15.55276 -15.06523 -14.99468 -14.69479 -14.40653 -14.37105 -13.90304 -13.70761 -13.29504 -13.05965 -12.69054 -12.53934 -12.50348 -12.41239 -12.26378 -12.03397 -11.58648 -11.47840 -11.41616 -11.09324 -10.92424 -10.82266 -10.70937 -10.39710 -10.02806 -9.75542 -9.55585 -9.45727 -9.05698 -8.83688 -8.28608 -6.25824 -4.28770 2.58307 2.98618 3.03707 3.22839 3.29975 3.37122 3.88927 4.28778 4.35795 4.40026 4.44552 4.88095 4.89576 4.94126 5.08452 5.09536 5.11434 5.14152 5.18402 5.22700 5.25555 5.33419 5.53308 5.64605 5.73241 5.76536 5.79934 5.81662 5.87781 5.94955 6.03485 6.13482 6.16144 6.37755 6.71149 6.98543 7.07306 7.30528 7.50146 8.01179 8.19430 8.40925 8.64899 8.77693 9.33303 10.86025 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.036650 B = 0.003030 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.801062 B = 9238.281968 C = 9607.604431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.122 3.878 3 H 0.111 0.889 4 N -0.709 5.709 5 C 0.519 3.481 6 O -0.544 6.544 7 C -0.105 4.105 8 C -0.112 4.112 9 C -0.118 4.118 10 C -0.122 4.122 11 C -0.120 4.120 12 C -0.098 4.098 13 C 0.498 3.502 14 O -0.557 6.557 15 N -0.696 5.696 16 C 0.220 3.780 17 C -0.546 4.546 18 H 0.081 0.919 19 C 0.078 3.922 20 N -0.890 5.890 21 Si 0.877 3.123 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.261 1.261 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.062 0.938 28 H 0.409 0.591 29 H 0.098 0.902 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.399 0.601 41 H 0.027 0.973 42 H 0.022 0.978 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.056 -2.946 24.862 25.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.013 3.987 3 H 0.129 0.871 4 N -0.362 5.362 5 C 0.306 3.694 6 O -0.421 6.421 7 C -0.126 4.126 8 C -0.149 4.149 9 C -0.156 4.156 10 C -0.159 4.159 11 C -0.158 4.158 12 C -0.136 4.136 13 C 0.282 3.718 14 O -0.436 6.436 15 N -0.344 5.344 16 C 0.098 3.902 17 C -0.583 4.583 18 H 0.099 0.901 19 C -0.126 4.126 20 N -0.527 5.527 21 Si 0.704 3.296 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.186 1.186 25 H 0.088 0.912 26 H 0.094 0.906 27 H 0.081 0.919 28 H 0.246 0.754 29 H 0.116 0.884 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.233 0.767 41 H 0.044 0.956 42 H 0.040 0.960 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.352 -2.803 24.707 24.868 hybrid contribution 0.379 -0.824 -0.527 1.049 sum 0.731 -3.628 24.180 24.461 Atomic orbital electron populations 1.22105 0.92984 1.03028 1.03447 1.20807 0.95621 0.98125 0.84102 0.87118 1.45808 1.67015 1.14881 1.08535 1.20676 0.77224 0.87171 0.84357 1.90687 1.50225 1.16010 1.85163 1.21350 1.01124 0.97097 0.93063 1.21543 0.98805 0.96097 0.98494 1.21529 1.01619 0.97847 0.94562 1.21567 1.00069 0.96491 0.97794 1.21563 0.99151 0.97452 0.97603 1.21338 1.02698 0.96939 0.92653 1.20459 0.81123 0.85091 0.85146 1.90639 1.39179 1.27034 1.86794 1.46145 1.51482 1.31193 1.05621 1.19541 0.95311 0.93040 0.82274 1.21073 1.33981 1.14495 0.88798 0.90141 1.24798 0.95351 0.96992 0.95457 1.69877 1.44612 1.40173 0.98083 0.86813 0.81288 0.83276 0.78264 1.19832 1.20853 1.18554 0.91220 0.90604 0.91863 0.75400 0.88416 0.91300 0.91250 0.91669 0.91629 0.92032 0.91909 0.91907 0.91714 0.91210 0.91176 0.76652 0.95557 0.95978 0.92193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 9.38 37.16 0.35 -1.59 16 2 C 0.12 1.75 2.98 -69.08 -0.21 1.55 16 3 H 0.11 1.62 7.58 -51.93 -0.39 1.23 16 4 N -0.71 -9.29 4.84 -54.94 -0.27 -9.55 16 5 C 0.52 6.69 7.12 -10.99 -0.08 6.61 16 6 O -0.54 -8.67 15.64 5.55 0.09 -8.59 16 7 C -0.11 -1.00 2.53 -91.77 -0.23 -1.23 16 8 C -0.11 -0.89 5.10 -26.73 -0.14 -1.03 16 9 C -0.12 -0.79 5.92 -26.73 -0.16 -0.94 16 10 C -0.12 -0.79 5.92 -26.73 -0.16 -0.95 16 11 C -0.12 -0.85 5.92 -26.73 -0.16 -1.01 16 12 C -0.10 -0.91 4.49 -26.73 -0.12 -1.03 16 13 C 0.50 9.04 7.22 -10.98 -0.08 8.96 16 14 O -0.56 -11.73 15.84 5.55 0.09 -11.64 16 15 N -0.70 -13.57 5.44 -61.47 -0.33 -13.91 16 16 C 0.22 5.26 4.50 -5.19 -0.02 5.24 16 17 C -0.55 -14.67 9.83 -34.44 -0.34 -15.01 16 18 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 19 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 20 N -0.89 -26.13 13.96 55.43 0.77 -25.35 16 21 Si 0.88 21.07 27.47 -169.99 -4.67 16.40 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 24 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 25 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.08 0.88 7.56 -51.92 -0.39 0.48 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.41 5.11 7.21 -40.82 -0.29 4.81 16 29 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.54 7.56 -51.93 -0.39 0.14 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 39 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 40 H 0.40 6.89 7.74 -40.82 -0.32 6.57 16 41 H 0.03 0.67 7.20 -51.93 -0.37 0.29 16 42 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 43 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 346.52 15.07 5.22 5.22 Total: -1.00 -31.85 346.52 -7.74 -39.59 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -7.20 Total: 6.19 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: -1.44 Total: 1.65 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: 0.17 Total: -48.82 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: 0.17 Total: -20.22 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.67 Total: 16.40 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.85 -7.74 -39.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330524342.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.035 kcal (2) G-P(sol) polarization free energy of solvation -31.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds