Wall clock time and date at job start Tue Mar 31 2020 05:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47077 * 2 1 4 4 N 1.46492 * 109.47213 * 120.00217 * 2 1 3 5 5 C 1.34771 * 120.00121 * 275.00112 * 4 2 1 6 6 O 1.21284 * 120.00285 * 359.97438 * 5 4 2 7 7 C 1.50701 * 120.00123 * 180.02562 * 5 4 2 8 8 C 1.53002 * 109.46852 * 299.99509 * 7 5 4 9 9 C 1.53004 * 109.46917 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.46915 * 60.00298 * 9 8 7 11 11 C 1.53002 * 109.47085 * 299.99599 * 10 9 8 12 12 C 1.52990 * 109.46915 * 60.00365 * 11 10 9 13 13 C 1.50703 * 109.46771 * 240.00448 * 2 1 3 14 14 O 1.21283 * 119.99488 * 239.99768 * 13 2 1 15 15 N 1.34777 * 120.00290 * 60.00208 * 13 2 1 16 16 C 1.46498 * 119.99828 * 180.27728 * 15 13 2 17 17 C 1.50700 * 109.46769 * 179.72341 * 16 15 13 18 18 H 1.07997 * 120.00357 * 359.97438 * 17 16 15 19 19 C 1.37886 * 119.99789 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99999 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 119.99952 * 359.97438 * 19 17 16 22 22 H 1.48506 * 109.47050 * 90.00071 * 21 19 17 23 23 H 1.48500 * 109.47345 * 209.99736 * 21 19 17 24 24 H 1.48498 * 109.47548 * 330.00215 * 21 19 17 25 25 H 1.08998 * 109.46818 * 300.00015 * 1 2 3 26 26 H 1.09008 * 109.47076 * 59.99403 * 1 2 3 27 27 H 1.08992 * 109.47503 * 179.97438 * 1 2 3 28 28 H 0.97006 * 119.99994 * 94.99867 * 4 2 1 29 29 H 1.08998 * 109.47701 * 59.99769 * 7 5 4 30 30 H 1.09001 * 109.47237 * 300.00044 * 8 7 5 31 31 H 1.08997 * 109.46976 * 60.00234 * 8 7 5 32 32 H 1.09001 * 109.47190 * 300.00056 * 9 8 7 33 33 H 1.09001 * 109.46750 * 180.02562 * 9 8 7 34 34 H 1.09001 * 109.46946 * 179.97438 * 10 9 8 35 35 H 1.09001 * 109.47389 * 59.99880 * 10 9 8 36 36 H 1.08993 * 109.46758 * 299.99970 * 11 10 9 37 37 H 1.09005 * 109.46719 * 180.02562 * 11 10 9 38 38 H 1.09005 * 109.47447 * 179.97438 * 12 11 10 39 39 H 1.09001 * 109.47161 * 59.99962 * 12 11 10 40 40 H 0.97001 * 119.99727 * 359.97438 * 15 13 2 41 41 H 1.09004 * 109.46963 * 299.72135 * 16 15 13 42 42 H 1.08994 * 109.47567 * 59.72287 * 16 15 13 43 43 H 0.97000 * 119.99789 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1471 -0.0184 2.3570 6 8 1.8590 1.1585 2.4115 7 6 2.6500 -0.7287 3.5873 8 6 1.7063 -1.8829 3.9313 9 6 2.2166 -2.6037 5.1807 10 6 2.2674 -1.6203 6.3517 11 6 3.2111 -0.4661 6.0078 12 6 2.7009 0.2547 4.7584 13 6 2.0323 -0.7103 -1.2306 14 8 2.7295 -1.6964 -1.1193 15 7 1.7067 -0.2498 -2.4546 16 6 2.1900 -0.9439 -3.6508 17 6 1.6831 -0.2366 -4.8812 18 1 1.0627 0.6418 -4.7821 19 6 2.0115 -0.7109 -6.1335 20 7 1.5688 -0.0940 -7.2073 21 14 3.0852 -2.2299 -6.3050 22 1 2.2267 -3.4411 -6.3439 23 1 3.8722 -2.1406 -7.5611 24 1 4.0101 -2.3158 -5.1464 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5140 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 2.2490 -1.6318 1.1525 29 1 3.6493 -1.1205 3.3978 30 1 0.7070 -1.4911 4.1209 31 1 1.6697 -2.5832 3.0969 32 1 3.2160 -2.9955 4.9916 33 1 1.5446 -3.4262 5.4255 34 1 2.6305 -2.1339 7.2420 35 1 1.2680 -1.2285 6.5409 36 1 4.2104 -0.8579 5.8187 37 1 3.2476 0.2343 6.8423 38 1 3.3728 1.0773 4.5136 39 1 1.7015 0.6464 4.9476 40 1 1.1488 0.5387 -2.5436 41 1 3.2800 -0.9444 -3.6551 42 1 1.8262 -1.9714 -3.6466 43 1 1.8001 -0.4275 -8.0883 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330524342.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:12 Heat of formation + Delta-G solvation = -131.605728 kcal Electronic energy + Delta-G solvation = -22265.676329 eV Core-core repulsion = 18922.302267 eV Total energy + Delta-G solvation = -3343.374062 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.61175 -40.50422 -38.52623 -36.39433 -35.98276 -34.49253 -32.82997 -31.63112 -31.15866 -29.64903 -26.01179 -24.71211 -23.64405 -23.29065 -21.56532 -21.32121 -20.63298 -19.43668 -18.47140 -17.79638 -17.13637 -16.83483 -16.38801 -16.21314 -16.08222 -15.47129 -15.05971 -15.01322 -14.90297 -14.61775 -14.41315 -14.27287 -13.82590 -13.44492 -13.32737 -13.24145 -13.08361 -13.06222 -12.72055 -12.64287 -12.21883 -12.02527 -11.93983 -11.67264 -11.54872 -11.34223 -11.01999 -10.96043 -10.92427 -10.68853 -10.24367 -10.01156 -8.40081 -6.47722 1.33222 1.35752 1.47238 1.50024 1.58822 1.87077 2.27851 2.50277 2.95306 3.53341 3.67460 3.76584 3.79940 4.00325 4.07660 4.25965 4.29190 4.33505 4.46657 4.56191 4.61236 4.62420 4.72311 4.73456 4.78949 4.98339 5.00867 5.12307 5.13648 5.17965 5.23175 5.26411 5.26680 5.29573 5.37765 5.41379 5.41763 5.57492 6.05227 6.45915 6.52642 6.70614 7.10085 7.15946 7.25991 8.74618 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.036650 B = 0.003030 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.801062 B = 9238.281968 C = 9607.604431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.132 3.868 3 H 0.110 0.890 4 N -0.707 5.707 5 C 0.518 3.482 6 O -0.577 6.577 7 C -0.100 4.100 8 C -0.108 4.108 9 C -0.116 4.116 10 C -0.121 4.121 11 C -0.116 4.116 12 C -0.096 4.096 13 C 0.502 3.498 14 O -0.583 6.583 15 N -0.697 5.697 16 C 0.232 3.768 17 C -0.548 4.548 18 H 0.059 0.941 19 C 0.025 3.975 20 N -0.931 5.931 21 Si 0.939 3.061 22 H -0.263 1.263 23 H -0.276 1.276 24 H -0.258 1.258 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.067 0.933 28 H 0.414 0.586 29 H 0.110 0.890 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.410 0.590 41 H 0.015 0.985 42 H 0.018 0.982 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.479 -4.363 26.556 26.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.023 3.977 3 H 0.128 0.872 4 N -0.360 5.360 5 C 0.307 3.693 6 O -0.456 6.456 7 C -0.121 4.121 8 C -0.146 4.146 9 C -0.153 4.153 10 C -0.158 4.158 11 C -0.153 4.153 12 C -0.135 4.135 13 C 0.288 3.712 14 O -0.464 6.464 15 N -0.346 5.346 16 C 0.108 3.892 17 C -0.586 4.586 18 H 0.077 0.923 19 C -0.175 4.175 20 N -0.570 5.570 21 Si 0.763 3.237 22 H -0.188 1.188 23 H -0.201 1.201 24 H -0.183 1.183 25 H 0.093 0.907 26 H 0.102 0.898 27 H 0.086 0.914 28 H 0.251 0.749 29 H 0.128 0.872 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.246 0.754 41 H 0.033 0.967 42 H 0.036 0.964 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.762 -4.219 26.428 26.773 hybrid contribution 0.219 -0.309 -1.027 1.095 sum 0.982 -4.528 25.401 25.820 Atomic orbital electron populations 1.22071 0.91134 1.03541 1.04123 1.20697 0.96880 0.97411 0.82721 0.87181 1.45842 1.66951 1.15040 1.08196 1.21289 0.76305 0.86821 0.84916 1.90672 1.51721 1.17548 1.85662 1.21399 1.01919 0.97388 0.91369 1.21542 0.98105 0.95509 0.99480 1.21531 1.02130 0.97927 0.93713 1.21573 0.99779 0.96216 0.98272 1.21544 0.99535 0.97689 0.96571 1.21314 1.01758 0.96748 0.93637 1.21007 0.80093 0.84577 0.85499 1.90623 1.40235 1.28336 1.87219 1.45972 1.51972 1.31547 1.05107 1.19157 0.94431 0.92789 0.82780 1.21286 1.33277 1.13898 0.90154 0.92292 1.25627 0.96693 0.99974 0.95222 1.69986 1.46247 1.42019 0.98752 0.85831 0.79683 0.79809 0.78401 1.18818 1.20089 1.18257 0.90666 0.89812 0.91416 0.74865 0.87204 0.91858 0.90863 0.91058 0.90651 0.90711 0.92211 0.91221 0.91073 0.92610 0.92418 0.75401 0.96710 0.96376 0.91852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 9.38 71.98 0.68 -2.80 16 2 C 0.13 3.64 2.98 44.25 0.13 3.77 16 3 H 0.11 3.13 7.58 -2.39 -0.02 3.11 16 4 N -0.71 -17.67 4.84 -446.11 -2.16 -19.84 16 5 C 0.52 12.88 7.12 87.66 0.62 13.51 16 6 O -0.58 -18.18 15.64 -3.04 -0.05 -18.23 16 7 C -0.10 -1.76 2.53 -11.54 -0.03 -1.79 16 8 C -0.11 -1.53 5.10 30.60 0.16 -1.38 16 9 C -0.12 -1.24 5.92 30.60 0.18 -1.06 16 10 C -0.12 -1.29 5.92 30.59 0.18 -1.10 16 11 C -0.12 -1.42 5.92 30.59 0.18 -1.24 16 12 C -0.10 -1.69 4.49 30.59 0.14 -1.56 16 13 C 0.50 17.74 7.22 87.66 0.63 18.37 16 14 O -0.58 -23.93 15.84 -3.04 -0.05 -23.97 16 15 N -0.70 -26.72 5.44 -466.79 -2.54 -29.26 16 16 C 0.23 10.96 4.50 85.63 0.38 11.35 16 17 C -0.55 -29.64 9.83 25.60 0.25 -29.39 16 18 H 0.06 3.36 7.84 -2.91 -0.02 3.34 16 19 C 0.03 1.40 5.47 84.66 0.46 1.87 16 20 N -0.93 -55.09 13.96 21.45 0.30 -54.79 16 21 Si 0.94 43.07 27.47 68.60 1.88 44.96 16 22 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 23 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 24 H -0.26 -11.65 6.54 99.48 0.65 -11.00 16 25 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.08 1.81 7.56 -2.38 -0.02 1.79 16 27 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.41 9.73 7.21 -92.70 -0.67 9.07 16 29 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.07 0.98 7.56 -2.39 -0.02 0.97 16 32 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 38 H 0.06 1.12 8.10 -2.38 -0.02 1.10 16 39 H 0.06 1.14 8.10 -2.39 -0.02 1.12 16 40 H 0.41 13.94 7.74 -92.71 -0.72 13.22 16 41 H 0.01 0.74 7.20 -2.38 -0.02 0.73 16 42 H 0.02 0.88 7.57 -2.39 -0.02 0.87 16 43 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -67.43 346.52 0.92 -66.51 By element: Atomic # 1 Polarization: 26.53 SS G_CDS: -0.44 Total: 26.09 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: 3.97 Total: 8.53 kcal Atomic # 7 Polarization: -99.48 SS G_CDS: -4.40 Total: -103.88 kcal Atomic # 8 Polarization: -42.11 SS G_CDS: -0.10 Total: -42.20 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 1.88 Total: 44.96 kcal Total: -67.43 0.92 -66.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330524342.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.096 kcal (2) G-P(sol) polarization free energy of solvation -67.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds