Wall clock time and date at job start Tue Mar 31 2020 05:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.47285 * 2 1 4 4 C 1.46501 * 120.00030 * 270.28154 * 3 2 1 5 5 C 1.50709 * 109.46575 * 269.72081 * 4 3 2 6 6 H 1.07999 * 119.99806 * 0.02562 * 5 4 3 7 7 C 1.37870 * 119.99772 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00597 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99792 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47135 * 90.00156 * 9 7 5 11 11 H 1.48500 * 109.47022 * 209.99721 * 9 7 5 12 12 H 1.48500 * 109.47177 * 329.99818 * 9 7 5 13 13 C 1.34777 * 120.00127 * 89.99752 * 3 2 1 14 14 O 1.21277 * 120.00496 * 180.02562 * 13 3 2 15 15 C 1.50705 * 119.99496 * 0.02562 * 13 3 2 16 16 H 1.09001 * 109.59014 * 0.71135 * 15 13 3 17 17 C 1.53192 * 109.58598 * 121.00146 * 15 13 3 18 18 C 1.53072 * 109.29408 * 174.27737 * 17 15 13 19 19 C 1.53040 * 109.65793 * 298.84106 * 18 17 15 20 20 C 1.53195 * 109.30905 * 61.30460 * 19 18 17 21 21 N 1.46922 * 108.77657 * 305.36181 * 20 19 18 22 22 C 1.34776 * 120.62931 * 233.63715 * 21 20 19 23 23 C 1.50697 * 120.00131 * 5.91476 * 22 21 20 24 24 O 1.21287 * 119.99613 * 185.92487 * 22 21 20 25 25 H 1.09004 * 109.47344 * 300.00111 * 1 2 3 26 26 H 1.09004 * 109.47084 * 59.99641 * 1 2 3 27 27 H 1.08998 * 109.47374 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46746 * 239.99842 * 2 1 3 29 29 H 1.08997 * 109.46892 * 119.99699 * 2 1 3 30 30 H 1.09001 * 109.47431 * 29.71363 * 4 3 2 31 31 H 1.08997 * 109.47587 * 149.72309 * 4 3 2 32 32 H 0.96995 * 120.00355 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.49328 * 294.36882 * 17 15 13 34 34 H 1.09002 * 109.49575 * 54.46532 * 17 15 13 35 35 H 1.09007 * 109.44814 * 178.75721 * 18 17 15 36 36 H 1.09000 * 109.33730 * 58.86404 * 18 17 15 37 37 H 1.08996 * 109.49837 * 301.34994 * 19 18 17 38 38 H 1.09006 * 109.49365 * 181.25473 * 19 18 17 39 39 H 1.09000 * 109.57942 * 185.57646 * 20 19 18 40 40 H 1.08995 * 109.70556 * 65.22526 * 20 19 18 41 41 H 1.09007 * 109.47110 * 90.00826 * 23 22 21 42 42 H 1.09005 * 109.47125 * 210.00390 * 23 22 21 43 43 H 1.09000 * 109.47458 * 330.00582 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2567 2.0739 -1.2687 5 6 3.6801 1.8433 -1.7072 6 1 4.3407 1.2408 -1.1015 7 6 4.1386 2.4017 -2.8814 8 7 3.3340 3.1350 -3.6191 9 14 5.9031 2.1165 -3.4245 10 1 5.9701 0.8968 -4.2689 11 1 6.3754 3.2868 -4.2071 12 1 6.7664 1.9392 -2.2293 13 6 2.2430 2.0166 1.1672 14 8 2.6468 3.1602 1.1673 15 6 1.9923 1.3059 2.4723 16 1 1.6473 0.2909 2.2753 17 6 3.2878 1.2588 3.2885 18 6 2.9947 0.6650 4.6686 19 6 1.9873 1.5497 5.4064 20 6 0.6779 1.5970 4.6126 21 7 0.9721 2.0324 3.2406 22 6 0.3189 3.0787 2.6973 23 6 -0.6261 3.8965 3.5393 24 8 0.4917 3.3618 1.5307 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.5758 1.6875 -2.0272 31 1 2.0856 3.1423 -1.1372 32 1 3.6566 3.5275 -4.4454 33 1 4.0210 0.6395 2.7717 34 1 3.6812 2.2686 3.4051 35 1 3.9191 0.6098 5.2437 36 1 2.5804 -0.3362 4.5501 37 1 2.3907 2.5577 5.5032 38 1 1.7975 1.1366 6.3971 39 1 -0.0079 2.3030 5.0809 40 1 0.2245 0.6060 4.5922 41 1 -0.0797 4.7152 4.0078 42 1 -1.4170 4.3020 2.9081 43 1 -1.0653 3.2643 4.3109 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330577059.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:30 Heat of formation + Delta-G solvation = -59.158815 kcal Electronic energy + Delta-G solvation = -24236.425660 eV Core-core repulsion = 20896.193132 eV Total energy + Delta-G solvation = -3340.232528 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.59476 -37.99414 -37.13219 -34.98673 -32.95790 -32.72502 -31.48586 -29.88561 -29.33242 -27.14955 -25.29257 -23.87613 -22.84847 -22.16152 -21.00674 -19.35034 -17.98862 -16.96358 -16.33605 -16.16332 -15.73283 -15.13855 -15.07122 -14.48751 -14.11950 -14.06214 -13.71867 -13.60655 -13.26161 -13.14837 -12.78805 -12.69701 -12.19292 -12.12410 -11.88443 -11.77143 -11.51962 -11.30978 -11.14261 -11.03195 -10.90725 -10.77532 -10.71858 -10.57085 -10.33357 -9.99423 -9.49789 -9.13020 -8.60373 -8.38431 -8.29857 -7.34687 -5.89969 -3.94356 2.88456 2.97706 3.36950 3.43210 3.47697 3.96639 4.08473 4.54008 4.60667 4.69331 4.77694 4.90424 5.11019 5.13845 5.18140 5.22657 5.33957 5.37613 5.43514 5.49577 5.54314 5.65939 5.74866 5.78707 5.82474 5.88694 5.89549 5.97750 6.03230 6.14165 6.36164 6.37169 6.59815 6.64981 7.29829 7.55905 7.71437 7.83529 8.08913 8.41147 8.49478 8.71876 9.07878 9.45934 9.70782 11.17769 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021067 B = 0.005506 C = 0.005188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.781605 B = 5083.950551 C = 5395.790079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.107 3.893 3 N -0.595 5.595 4 C 0.255 3.745 5 C -0.522 4.522 6 H 0.055 0.945 7 C 0.059 3.941 8 N -0.895 5.895 9 Si 0.896 3.104 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.275 1.275 13 C 0.532 3.468 14 O -0.527 6.527 15 C 0.119 3.881 16 H 0.086 0.914 17 C -0.123 4.123 18 C -0.116 4.116 19 C -0.136 4.136 20 C 0.108 3.892 21 N -0.608 5.608 22 C 0.496 3.504 23 C -0.170 4.170 24 O -0.487 6.487 25 H 0.047 0.953 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.080 0.920 29 H 0.061 0.939 30 H 0.026 0.974 31 H 0.044 0.956 32 H 0.261 0.739 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.089 0.911 40 H 0.067 0.933 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.619 -7.535 19.629 22.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.018 4.018 3 N -0.328 5.328 4 C 0.135 3.865 5 C -0.561 4.561 6 H 0.073 0.927 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.724 3.276 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.200 1.200 13 C 0.318 3.682 14 O -0.403 6.403 15 C 0.012 3.988 16 H 0.104 0.896 17 C -0.162 4.162 18 C -0.154 4.154 19 C -0.175 4.175 20 C -0.015 4.015 21 N -0.346 5.346 22 C 0.283 3.717 23 C -0.229 4.229 24 O -0.360 6.360 25 H 0.066 0.934 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.099 0.901 29 H 0.079 0.921 30 H 0.044 0.956 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.107 0.893 40 H 0.085 0.915 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.331 -6.611 18.764 21.202 hybrid contribution 0.936 -0.278 -0.274 1.014 sum -6.394 -6.888 18.489 20.741 Atomic orbital electron populations 1.22191 0.97069 1.00700 1.02377 1.21401 0.93461 0.84925 1.01996 1.48008 1.64521 1.12721 1.07535 1.19138 0.95520 0.93860 0.77949 1.21496 0.97100 1.31453 1.06015 0.92684 1.24934 0.97619 0.95111 0.96549 1.69949 1.35485 1.33689 1.14341 0.86540 0.85041 0.77546 0.78512 1.20746 1.21186 1.19999 1.19380 0.78304 0.86402 0.84097 1.90635 1.46288 1.17000 1.86366 1.21426 0.89302 0.96144 0.91892 0.89618 1.21817 0.96048 1.03138 0.95196 1.21509 0.99268 0.98831 0.95793 1.21937 0.95781 1.01198 0.98544 1.21785 0.97364 1.00616 0.81692 1.47994 1.39385 1.32582 1.14634 1.20836 0.81659 0.80422 0.88745 1.21941 0.99703 1.00458 1.00810 1.90928 1.61792 1.66795 1.16441 0.93366 0.92108 0.92651 0.90149 0.92128 0.95584 0.93746 0.92903 0.90441 0.90372 0.91416 0.91782 0.91258 0.90807 0.89323 0.91454 0.89123 0.89175 0.90353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 10.22 37.16 0.38 -2.22 16 2 C 0.11 1.91 5.76 -4.04 -0.02 1.88 16 3 N -0.60 -13.94 2.46 -175.05 -0.43 -14.37 16 4 C 0.25 7.29 5.16 -5.19 -0.03 7.26 16 5 C -0.52 -15.66 9.39 -34.44 -0.32 -15.99 16 6 H 0.05 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 8 N -0.90 -28.09 13.29 55.43 0.74 -27.35 16 9 Si 0.90 22.77 29.54 -169.99 -5.02 17.75 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 13 C 0.53 12.21 4.26 -10.98 -0.05 12.16 16 14 O -0.53 -14.69 14.12 -19.22 -0.27 -14.96 16 15 C 0.12 1.95 2.94 -68.75 -0.20 1.75 16 16 H 0.09 1.24 5.38 -51.93 -0.28 0.97 16 17 C -0.12 -1.76 5.33 -26.60 -0.14 -1.90 16 18 C -0.12 -1.12 5.88 -26.67 -0.16 -1.28 16 19 C -0.14 -1.14 6.09 -26.61 -0.16 -1.30 16 20 C 0.11 0.97 6.29 -3.71 -0.02 0.94 16 21 N -0.61 -8.67 2.97 -166.53 -0.50 -9.17 16 22 C 0.50 8.31 7.49 -10.99 -0.08 8.23 16 23 C -0.17 -1.87 9.63 36.00 0.35 -1.52 16 24 O -0.49 -11.24 12.81 -19.23 -0.25 -11.49 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.08 1.46 8.07 -51.93 -0.42 1.04 16 29 H 0.06 0.90 5.92 -51.93 -0.31 0.59 16 30 H 0.03 0.76 8.07 -51.93 -0.42 0.34 16 31 H 0.04 1.47 7.42 -51.93 -0.39 1.09 16 32 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.08 1.30 7.95 -51.93 -0.41 0.89 16 35 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.09 0.60 5.36 -51.93 -0.28 0.32 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.09 0.92 8.14 -51.92 -0.42 0.50 16 42 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.08 0.58 5.93 -51.93 -0.31 0.27 16 LS Contribution 340.19 15.07 5.13 5.13 Total: -1.00 -38.71 340.19 -8.17 -46.88 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -7.01 Total: -2.13 kcal Atomic # 6 Polarization: 10.27 SS G_CDS: -0.56 Total: 9.72 kcal Atomic # 7 Polarization: -50.70 SS G_CDS: -0.19 Total: -50.89 kcal Atomic # 8 Polarization: -25.94 SS G_CDS: -0.52 Total: -26.45 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -38.71 -8.17 -46.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330577059.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.279 kcal (2) G-P(sol) polarization free energy of solvation -38.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds